Note

Go to the end to download the full example code.

8.7. Run junifer and julearn.

This example uses a ParcelAggregation marker to compute the mean of each parcel using the Schaefer parcellation (100 rois, 7 Yeo networks) for a 3D nifti to extract some features for machine learning using julearn to predict some other data.

Authors: Leonard Sasse, Sami Hamdan, Nicolas Nieto, Synchon Mandal

License: BSD 3 clause

import tempfile

import nilearn
import pandas as pd
from julearn import run_cross_validation, PipelineCreator

import junifer.testing.registry  # noqa: F401
from junifer.api import collect, run
from junifer.storage.sqlite import SQLiteFeatureStorage
from junifer.utils import configure_logging

Set the logging level to info to see extra information:

configure_logging(level="INFO")

2025-11-26 08:42:13,183 - JUNIFER - INFO - ===== Lib Versions =====
2025-11-26 08:42:13,183 - JUNIFER - INFO - numpy: 1.26.4
2025-11-26 08:42:13,183 - JUNIFER - INFO - scipy: 1.15.0
2025-11-26 08:42:13,184 - JUNIFER - INFO - pandas: 2.1.4
2025-11-26 08:42:13,184 - JUNIFER - INFO - nilearn: 0.10.4
2025-11-26 08:42:13,184 - JUNIFER - INFO - nibabel: 5.3.2
2025-11-26 08:42:13,184 - JUNIFER - INFO - junifer: 0.0.6
2025-11-26 08:42:13,184 - JUNIFER - INFO - ========================

Define the markers you want:

marker_dicts = [
    {
        "name": "Schaefer100x17_TrimMean80",
        "kind": "ParcelAggregation",
        "parcellation": "Schaefer100x17",
        "method": "trim_mean",
        "method_params": {"proportiontocut": 0.2},
    },
    {
        "name": "Schaefer200x17_Mean",
        "kind": "ParcelAggregation",
        "parcellation": "Schaefer200x17",
        "method": "mean",
    },
]

Define target and confounds for julearn machine learning:

y = "age"
confound = "sex"

Load the VBM phenotype data for machine learning data: - Fetch the Oasis dataset

oasis_dataset = nilearn.datasets.fetch_oasis_vbm()
age = oasis_dataset.ext_vars[y][:10]
sex = (
    pd.Series(oasis_dataset.ext_vars["mf"][:10])
    .map(lambda x: 1 if x == "F" else 0)
    .values
)

Create a temporary directory for junifer feature extraction:

with tempfile.TemporaryDirectory() as tmpdir:
    storage = {"kind": "SQLiteFeatureStorage", "uri": f"{tmpdir}/test.sqlite"}
    # run the defined junifer feature extraction pipeline
    run(
        workdir="/tmp",
        datagrabber={"kind": "OasisVBMTestingDataGrabber"},
        markers=marker_dicts,
        storage=storage,
    )

    # read in extracted features and add confounds and targets
    # for julearn run cross validation
    collect(storage)
    db = SQLiteFeatureStorage(uri=storage["uri"])

    df_vbm = db.read_df(feature_name="VBM_GM_Schaefer200x17_Mean_aggregation")
    oasis_subjects = [x[0] for x in df_vbm.index]
    df_vbm.index = oasis_subjects

2025-11-26 08:42:13,427 - JUNIFER - INFO - Validating Marker Collection
2025-11-26 08:42:13,427 - JUNIFER - INFO - DataGrabber output type: ['VBM_GM']
2025-11-26 08:42:13,427 - JUNIFER - INFO - Validating Data Reader:
2025-11-26 08:42:13,428 - JUNIFER - INFO - Data Reader output type: ['VBM_GM']
2025-11-26 08:42:13,428 - JUNIFER - INFO - Validating Marker: Schaefer100x17_TrimMean80
2025-11-26 08:42:13,428 - JUNIFER - INFO - Marker output type: ['vector']
2025-11-26 08:42:13,428 - JUNIFER - INFO - Validating storage for Schaefer100x17_TrimMean80
2025-11-26 08:42:13,428 - JUNIFER - INFO - Validating Marker: Schaefer200x17_Mean
2025-11-26 08:42:13,428 - JUNIFER - INFO - Marker output type: ['vector']
2025-11-26 08:42:13,428 - JUNIFER - INFO - Validating storage for Schaefer200x17_Mean
2025-11-26 08:42:13,436 - JUNIFER - INFO - Getting element sub-01
2025-11-26 08:42:13,436 - JUNIFER - INFO - Fitting pipeline
2025-11-26 08:42:13,436 - JUNIFER - INFO - Reading VBM_GM from /home/synchon/nilearn_data/oasis1/OAS1_0001_MR1/mwrc1OAS1_0001_MR1_mpr_anon_fslswapdim_bet.nii.gz
2025-11-26 08:42:13,436 - JUNIFER - INFO - VBM_GM is of type NIFTI
2025-11-26 08:42:13,439 - JUNIFER - INFO - Fitting marker Schaefer100x17_TrimMean80
2025-11-26 08:42:13,439 - JUNIFER - INFO - Computing VBM_GM
2025-11-26 08:42:13,439 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-11-26 08:42:13,439 - JUNIFER - INFO - Parcellation parameters:
2025-11-26 08:42:13,439 - JUNIFER - INFO -      resolution: None
2025-11-26 08:42:13,439 - JUNIFER - INFO -      n_rois: 100
2025-11-26 08:42:13,439 - JUNIFER - INFO -      yeo_networks: 17
2025-11-26 08:42:13,439 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-11-26 08:42:13,578 - JUNIFER - INFO - Loading parcellation: /home/synchon/junifer_data/v2/parcellations/Schaefer2018/Yeo2011/Schaefer2018_100Parcels_17Networks_order_FSLMNI152_1mm.nii.gz
2025-11-26 08:42:15,358 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-11-26 08:42:16,456 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpq8coqsnb/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_6c89f5d4-ca9b-11f0-a076-ebd5e38fbbd3aapiwm5o/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpq8coqsnb/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_6c89f5d4-ca9b-11f0-a076-ebd5e38fbbd3aapiwm5o/MNI152Lin_T1w.nii.gz -t /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpq8coqsnb/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_6c89f5d4-ca9b-11f0-a076-ebd5e38fbbd3aapiwm5o/parcellation_warped.nii.gz
2025-11-26 08:42:21,762 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
/tmp/junifer/tmpq8coqsnb/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_6c89f5d4-ca9b-11f0-a076-ebd5e38fbbd3aapiwm5o/prewarp_parcellation.nii.gz is a file
/tmp/junifer/tmpq8coqsnb/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_6c89f5d4-ca9b-11f0-a076-ebd5e38fbbd3aapiwm5o/MNI152Lin_T1w.nii.gz is a file
/home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 is a file
/tmp/junifer/tmpq8coqsnb/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_6c89f5d4-ca9b-11f0-a076-ebd5e38fbbd3aapiwm5o/parcellation_warped.nii.gz is a prefix
Singularity args: --bind /tmp/junifer/tmpq8coqsnb/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_6c89f5d4-ca9b-11f0-a076-ebd5e38fbbd3aapiwm5o:/data/mount_1 --bind /tmp/junifer/tmpq8coqsnb/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_6c89f5d4-ca9b-11f0-a076-ebd5e38fbbd3aapiwm5o:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmpq8coqsnb/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_6c89f5d4-ca9b-11f0-a076-ebd5e38fbbd3aapiwm5o:/data/mount_4
Corrected args for ANTS: antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz
Running command: /data/group/appliedml/tools/ants_2.5.0/singularity_cmd exec --cleanenv --bind /tmp/junifer/tmpq8coqsnb/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_6c89f5d4-ca9b-11f0-a076-ebd5e38fbbd3aapiwm5o:/data/mount_1 --bind /tmp/junifer/tmpq8coqsnb/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_6c89f5d4-ca9b-11f0-a076-ebd5e38fbbd3aapiwm5o:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmpq8coqsnb/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_6c89f5d4-ca9b-11f0-a076-ebd5e38fbbd3aapiwm5o:/data/mount_4 /data/group/appliedml/tools/ants_2.5.0/ants_v2.5.0.sif antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz

2025-11-26 08:42:23,010 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpwa8g2uae/test.sqlite (multiple output)>
2025-11-26 08:42:23,036 - JUNIFER - INFO - Fitting marker Schaefer200x17_Mean
2025-11-26 08:42:23,036 - JUNIFER - INFO - Computing VBM_GM
2025-11-26 08:42:23,036 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-11-26 08:42:23,036 - JUNIFER - INFO - Parcellation parameters:
2025-11-26 08:42:23,036 - JUNIFER - INFO -      resolution: None
2025-11-26 08:42:23,036 - JUNIFER - INFO -      n_rois: 200
2025-11-26 08:42:23,036 - JUNIFER - INFO -      yeo_networks: 17
2025-11-26 08:42:23,036 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-11-26 08:42:23,240 - JUNIFER - INFO - Loading parcellation: /home/synchon/junifer_data/v2/parcellations/Schaefer2018/Yeo2011/Schaefer2018_200Parcels_17Networks_order_FSLMNI152_1mm.nii.gz
2025-11-26 08:42:25,033 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-11-26 08:42:26,122 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpq8coqsnb/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_724cf3e0-ca9b-11f0-a076-ebd5e38fbbd36e00jlyg/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpq8coqsnb/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_724cf3e0-ca9b-11f0-a076-ebd5e38fbbd36e00jlyg/MNI152Lin_T1w.nii.gz -t /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpq8coqsnb/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_724cf3e0-ca9b-11f0-a076-ebd5e38fbbd36e00jlyg/parcellation_warped.nii.gz
2025-11-26 08:42:35,310 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
/tmp/junifer/tmpq8coqsnb/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_724cf3e0-ca9b-11f0-a076-ebd5e38fbbd36e00jlyg/prewarp_parcellation.nii.gz is a file
/tmp/junifer/tmpq8coqsnb/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_724cf3e0-ca9b-11f0-a076-ebd5e38fbbd36e00jlyg/MNI152Lin_T1w.nii.gz is a file
/home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 is a file
/tmp/junifer/tmpq8coqsnb/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_724cf3e0-ca9b-11f0-a076-ebd5e38fbbd36e00jlyg/parcellation_warped.nii.gz is a prefix
Singularity args: --bind /tmp/junifer/tmpq8coqsnb/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_724cf3e0-ca9b-11f0-a076-ebd5e38fbbd36e00jlyg:/data/mount_1 --bind /tmp/junifer/tmpq8coqsnb/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_724cf3e0-ca9b-11f0-a076-ebd5e38fbbd36e00jlyg:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmpq8coqsnb/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_724cf3e0-ca9b-11f0-a076-ebd5e38fbbd36e00jlyg:/data/mount_4
Corrected args for ANTS: antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz
Running command: /data/group/appliedml/tools/ants_2.5.0/singularity_cmd exec --cleanenv --bind /tmp/junifer/tmpq8coqsnb/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_724cf3e0-ca9b-11f0-a076-ebd5e38fbbd36e00jlyg:/data/mount_1 --bind /tmp/junifer/tmpq8coqsnb/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_724cf3e0-ca9b-11f0-a076-ebd5e38fbbd36e00jlyg:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmpq8coqsnb/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_724cf3e0-ca9b-11f0-a076-ebd5e38fbbd36e00jlyg:/data/mount_4 /data/group/appliedml/tools/ants_2.5.0/ants_v2.5.0.sif antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz

2025-11-26 08:42:36,550 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpwa8g2uae/test.sqlite (multiple output)>
2025-11-26 08:42:36,586 - JUNIFER - INFO - Marker collection fitting done
2025-11-26 08:42:36,588 - JUNIFER - INFO - Getting element sub-02
2025-11-26 08:42:36,588 - JUNIFER - INFO - Fitting pipeline
2025-11-26 08:42:36,588 - JUNIFER - INFO - Reading VBM_GM from /home/synchon/nilearn_data/oasis1/OAS1_0002_MR1/mwrc1OAS1_0002_MR1_mpr_anon_fslswapdim_bet.nii.gz
2025-11-26 08:42:36,588 - JUNIFER - INFO - VBM_GM is of type NIFTI
2025-11-26 08:42:36,590 - JUNIFER - INFO - Fitting marker Schaefer100x17_TrimMean80
2025-11-26 08:42:36,590 - JUNIFER - INFO - Computing VBM_GM
2025-11-26 08:42:36,590 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-11-26 08:42:36,590 - JUNIFER - INFO - Parcellation parameters:
2025-11-26 08:42:36,590 - JUNIFER - INFO -      resolution: None
2025-11-26 08:42:36,590 - JUNIFER - INFO -      n_rois: 100
2025-11-26 08:42:36,590 - JUNIFER - INFO -      yeo_networks: 17
2025-11-26 08:42:36,590 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-11-26 08:42:36,726 - JUNIFER - INFO - Loading parcellation: /home/synchon/junifer_data/v2/parcellations/Schaefer2018/Yeo2011/Schaefer2018_100Parcels_17Networks_order_FSLMNI152_1mm.nii.gz
2025-11-26 08:42:38,514 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-11-26 08:42:39,607 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp3cnb_vy1/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_7a5644f6-ca9b-11f0-a076-ebd5e38fbbd30zo13ddf/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp3cnb_vy1/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_7a5644f6-ca9b-11f0-a076-ebd5e38fbbd30zo13ddf/MNI152Lin_T1w.nii.gz -t /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmp3cnb_vy1/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_7a5644f6-ca9b-11f0-a076-ebd5e38fbbd30zo13ddf/parcellation_warped.nii.gz
2025-11-26 08:42:44,907 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
/tmp/junifer/tmp3cnb_vy1/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_7a5644f6-ca9b-11f0-a076-ebd5e38fbbd30zo13ddf/prewarp_parcellation.nii.gz is a file
/tmp/junifer/tmp3cnb_vy1/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_7a5644f6-ca9b-11f0-a076-ebd5e38fbbd30zo13ddf/MNI152Lin_T1w.nii.gz is a file
/home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 is a file
/tmp/junifer/tmp3cnb_vy1/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_7a5644f6-ca9b-11f0-a076-ebd5e38fbbd30zo13ddf/parcellation_warped.nii.gz is a prefix
Singularity args: --bind /tmp/junifer/tmp3cnb_vy1/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_7a5644f6-ca9b-11f0-a076-ebd5e38fbbd30zo13ddf:/data/mount_1 --bind /tmp/junifer/tmp3cnb_vy1/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_7a5644f6-ca9b-11f0-a076-ebd5e38fbbd30zo13ddf:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmp3cnb_vy1/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_7a5644f6-ca9b-11f0-a076-ebd5e38fbbd30zo13ddf:/data/mount_4
Corrected args for ANTS: antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz
Running command: /data/group/appliedml/tools/ants_2.5.0/singularity_cmd exec --cleanenv --bind /tmp/junifer/tmp3cnb_vy1/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_7a5644f6-ca9b-11f0-a076-ebd5e38fbbd30zo13ddf:/data/mount_1 --bind /tmp/junifer/tmp3cnb_vy1/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_7a5644f6-ca9b-11f0-a076-ebd5e38fbbd30zo13ddf:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmp3cnb_vy1/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_7a5644f6-ca9b-11f0-a076-ebd5e38fbbd30zo13ddf:/data/mount_4 /data/group/appliedml/tools/ants_2.5.0/ants_v2.5.0.sif antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz

2025-11-26 08:42:46,323 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpwa8g2uae/test.sqlite (multiple output)>
2025-11-26 08:42:46,349 - JUNIFER - INFO - Fitting marker Schaefer200x17_Mean
2025-11-26 08:42:46,349 - JUNIFER - INFO - Computing VBM_GM
2025-11-26 08:42:46,349 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-11-26 08:42:46,349 - JUNIFER - INFO - Parcellation parameters:
2025-11-26 08:42:46,349 - JUNIFER - INFO -      resolution: None
2025-11-26 08:42:46,349 - JUNIFER - INFO -      n_rois: 200
2025-11-26 08:42:46,350 - JUNIFER - INFO -      yeo_networks: 17
2025-11-26 08:42:46,350 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-11-26 08:42:46,478 - JUNIFER - INFO - Loading parcellation: /home/synchon/junifer_data/v2/parcellations/Schaefer2018/Yeo2011/Schaefer2018_200Parcels_17Networks_order_FSLMNI152_1mm.nii.gz
2025-11-26 08:42:48,280 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-11-26 08:42:49,369 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp3cnb_vy1/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_8026ddaa-ca9b-11f0-a076-ebd5e38fbbd361c1492q/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp3cnb_vy1/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_8026ddaa-ca9b-11f0-a076-ebd5e38fbbd361c1492q/MNI152Lin_T1w.nii.gz -t /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmp3cnb_vy1/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_8026ddaa-ca9b-11f0-a076-ebd5e38fbbd361c1492q/parcellation_warped.nii.gz
2025-11-26 08:42:58,605 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
/tmp/junifer/tmp3cnb_vy1/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_8026ddaa-ca9b-11f0-a076-ebd5e38fbbd361c1492q/prewarp_parcellation.nii.gz is a file
/tmp/junifer/tmp3cnb_vy1/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_8026ddaa-ca9b-11f0-a076-ebd5e38fbbd361c1492q/MNI152Lin_T1w.nii.gz is a file
/home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 is a file
/tmp/junifer/tmp3cnb_vy1/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_8026ddaa-ca9b-11f0-a076-ebd5e38fbbd361c1492q/parcellation_warped.nii.gz is a prefix
Singularity args: --bind /tmp/junifer/tmp3cnb_vy1/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_8026ddaa-ca9b-11f0-a076-ebd5e38fbbd361c1492q:/data/mount_1 --bind /tmp/junifer/tmp3cnb_vy1/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_8026ddaa-ca9b-11f0-a076-ebd5e38fbbd361c1492q:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmp3cnb_vy1/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_8026ddaa-ca9b-11f0-a076-ebd5e38fbbd361c1492q:/data/mount_4
Corrected args for ANTS: antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz
Running command: /data/group/appliedml/tools/ants_2.5.0/singularity_cmd exec --cleanenv --bind /tmp/junifer/tmp3cnb_vy1/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_8026ddaa-ca9b-11f0-a076-ebd5e38fbbd361c1492q:/data/mount_1 --bind /tmp/junifer/tmp3cnb_vy1/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_8026ddaa-ca9b-11f0-a076-ebd5e38fbbd361c1492q:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmp3cnb_vy1/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_8026ddaa-ca9b-11f0-a076-ebd5e38fbbd361c1492q:/data/mount_4 /data/group/appliedml/tools/ants_2.5.0/ants_v2.5.0.sif antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz

2025-11-26 08:42:59,853 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpwa8g2uae/test.sqlite (multiple output)>
2025-11-26 08:42:59,890 - JUNIFER - INFO - Marker collection fitting done
2025-11-26 08:42:59,892 - JUNIFER - INFO - Getting element sub-03
2025-11-26 08:42:59,892 - JUNIFER - INFO - Fitting pipeline
2025-11-26 08:42:59,892 - JUNIFER - INFO - Reading VBM_GM from /home/synchon/nilearn_data/oasis1/OAS1_0003_MR1/mwrc1OAS1_0003_MR1_mpr_anon_fslswapdim_bet.nii.gz
2025-11-26 08:42:59,892 - JUNIFER - INFO - VBM_GM is of type NIFTI
2025-11-26 08:42:59,894 - JUNIFER - INFO - Fitting marker Schaefer100x17_TrimMean80
2025-11-26 08:42:59,894 - JUNIFER - INFO - Computing VBM_GM
2025-11-26 08:42:59,894 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-11-26 08:42:59,894 - JUNIFER - INFO - Parcellation parameters:
2025-11-26 08:42:59,894 - JUNIFER - INFO -      resolution: None
2025-11-26 08:42:59,894 - JUNIFER - INFO -      n_rois: 100
2025-11-26 08:42:59,894 - JUNIFER - INFO -      yeo_networks: 17
2025-11-26 08:42:59,894 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-11-26 08:43:00,019 - JUNIFER - INFO - Loading parcellation: /home/synchon/junifer_data/v2/parcellations/Schaefer2018/Yeo2011/Schaefer2018_100Parcels_17Networks_order_FSLMNI152_1mm.nii.gz
2025-11-26 08:43:01,821 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-11-26 08:43:02,908 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpmthrowi7/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_8838b93c-ca9b-11f0-a076-ebd5e38fbbd3ahv5axuu/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpmthrowi7/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_8838b93c-ca9b-11f0-a076-ebd5e38fbbd3ahv5axuu/MNI152Lin_T1w.nii.gz -t /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpmthrowi7/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_8838b93c-ca9b-11f0-a076-ebd5e38fbbd3ahv5axuu/parcellation_warped.nii.gz
2025-11-26 08:43:08,172 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
/tmp/junifer/tmpmthrowi7/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_8838b93c-ca9b-11f0-a076-ebd5e38fbbd3ahv5axuu/prewarp_parcellation.nii.gz is a file
/tmp/junifer/tmpmthrowi7/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_8838b93c-ca9b-11f0-a076-ebd5e38fbbd3ahv5axuu/MNI152Lin_T1w.nii.gz is a file
/home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 is a file
/tmp/junifer/tmpmthrowi7/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_8838b93c-ca9b-11f0-a076-ebd5e38fbbd3ahv5axuu/parcellation_warped.nii.gz is a prefix
Singularity args: --bind /tmp/junifer/tmpmthrowi7/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_8838b93c-ca9b-11f0-a076-ebd5e38fbbd3ahv5axuu:/data/mount_1 --bind /tmp/junifer/tmpmthrowi7/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_8838b93c-ca9b-11f0-a076-ebd5e38fbbd3ahv5axuu:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmpmthrowi7/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_8838b93c-ca9b-11f0-a076-ebd5e38fbbd3ahv5axuu:/data/mount_4
Corrected args for ANTS: antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz
Running command: /data/group/appliedml/tools/ants_2.5.0/singularity_cmd exec --cleanenv --bind /tmp/junifer/tmpmthrowi7/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_8838b93c-ca9b-11f0-a076-ebd5e38fbbd3ahv5axuu:/data/mount_1 --bind /tmp/junifer/tmpmthrowi7/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_8838b93c-ca9b-11f0-a076-ebd5e38fbbd3ahv5axuu:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmpmthrowi7/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_8838b93c-ca9b-11f0-a076-ebd5e38fbbd3ahv5axuu:/data/mount_4 /data/group/appliedml/tools/ants_2.5.0/ants_v2.5.0.sif antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz

2025-11-26 08:43:09,421 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpwa8g2uae/test.sqlite (multiple output)>
2025-11-26 08:43:09,446 - JUNIFER - INFO - Fitting marker Schaefer200x17_Mean
2025-11-26 08:43:09,446 - JUNIFER - INFO - Computing VBM_GM
2025-11-26 08:43:09,446 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-11-26 08:43:09,446 - JUNIFER - INFO - Parcellation parameters:
2025-11-26 08:43:09,446 - JUNIFER - INFO -      resolution: None
2025-11-26 08:43:09,446 - JUNIFER - INFO -      n_rois: 200
2025-11-26 08:43:09,446 - JUNIFER - INFO -      yeo_networks: 17
2025-11-26 08:43:09,446 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-11-26 08:43:09,587 - JUNIFER - INFO - Loading parcellation: /home/synchon/junifer_data/v2/parcellations/Schaefer2018/Yeo2011/Schaefer2018_200Parcels_17Networks_order_FSLMNI152_1mm.nii.gz
2025-11-26 08:43:11,388 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-11-26 08:43:12,476 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpmthrowi7/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_8dec8ca0-ca9b-11f0-a076-ebd5e38fbbd39cxjruh7/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpmthrowi7/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_8dec8ca0-ca9b-11f0-a076-ebd5e38fbbd39cxjruh7/MNI152Lin_T1w.nii.gz -t /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpmthrowi7/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_8dec8ca0-ca9b-11f0-a076-ebd5e38fbbd39cxjruh7/parcellation_warped.nii.gz
2025-11-26 08:43:21,657 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
/tmp/junifer/tmpmthrowi7/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_8dec8ca0-ca9b-11f0-a076-ebd5e38fbbd39cxjruh7/prewarp_parcellation.nii.gz is a file
/tmp/junifer/tmpmthrowi7/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_8dec8ca0-ca9b-11f0-a076-ebd5e38fbbd39cxjruh7/MNI152Lin_T1w.nii.gz is a file
/home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 is a file
/tmp/junifer/tmpmthrowi7/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_8dec8ca0-ca9b-11f0-a076-ebd5e38fbbd39cxjruh7/parcellation_warped.nii.gz is a prefix
Singularity args: --bind /tmp/junifer/tmpmthrowi7/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_8dec8ca0-ca9b-11f0-a076-ebd5e38fbbd39cxjruh7:/data/mount_1 --bind /tmp/junifer/tmpmthrowi7/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_8dec8ca0-ca9b-11f0-a076-ebd5e38fbbd39cxjruh7:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmpmthrowi7/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_8dec8ca0-ca9b-11f0-a076-ebd5e38fbbd39cxjruh7:/data/mount_4
Corrected args for ANTS: antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz
Running command: /data/group/appliedml/tools/ants_2.5.0/singularity_cmd exec --cleanenv --bind /tmp/junifer/tmpmthrowi7/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_8dec8ca0-ca9b-11f0-a076-ebd5e38fbbd39cxjruh7:/data/mount_1 --bind /tmp/junifer/tmpmthrowi7/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_8dec8ca0-ca9b-11f0-a076-ebd5e38fbbd39cxjruh7:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmpmthrowi7/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_8dec8ca0-ca9b-11f0-a076-ebd5e38fbbd39cxjruh7:/data/mount_4 /data/group/appliedml/tools/ants_2.5.0/ants_v2.5.0.sif antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz

2025-11-26 08:43:22,907 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpwa8g2uae/test.sqlite (multiple output)>
2025-11-26 08:43:22,943 - JUNIFER - INFO - Marker collection fitting done
2025-11-26 08:43:22,944 - JUNIFER - INFO - Getting element sub-04
2025-11-26 08:43:22,945 - JUNIFER - INFO - Fitting pipeline
2025-11-26 08:43:22,945 - JUNIFER - INFO - Reading VBM_GM from /home/synchon/nilearn_data/oasis1/OAS1_0004_MR1/mwrc1OAS1_0004_MR1_mpr_anon_fslswapdim_bet.nii.gz
2025-11-26 08:43:22,945 - JUNIFER - INFO - VBM_GM is of type NIFTI
2025-11-26 08:43:22,947 - JUNIFER - INFO - Fitting marker Schaefer100x17_TrimMean80
2025-11-26 08:43:22,947 - JUNIFER - INFO - Computing VBM_GM
2025-11-26 08:43:22,947 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-11-26 08:43:22,947 - JUNIFER - INFO - Parcellation parameters:
2025-11-26 08:43:22,947 - JUNIFER - INFO -      resolution: None
2025-11-26 08:43:22,947 - JUNIFER - INFO -      n_rois: 100
2025-11-26 08:43:22,947 - JUNIFER - INFO -      yeo_networks: 17
2025-11-26 08:43:22,947 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-11-26 08:43:23,088 - JUNIFER - INFO - Loading parcellation: /home/synchon/junifer_data/v2/parcellations/Schaefer2018/Yeo2011/Schaefer2018_100Parcels_17Networks_order_FSLMNI152_1mm.nii.gz
2025-11-26 08:43:24,951 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-11-26 08:43:26,038 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmplf2ptgjx/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_95f883e0-ca9b-11f0-a076-ebd5e38fbbd368jimr0x/prewarp_parcellation.nii.gz -r /tmp/junifer/tmplf2ptgjx/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_95f883e0-ca9b-11f0-a076-ebd5e38fbbd368jimr0x/MNI152Lin_T1w.nii.gz -t /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmplf2ptgjx/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_95f883e0-ca9b-11f0-a076-ebd5e38fbbd368jimr0x/parcellation_warped.nii.gz
2025-11-26 08:43:31,379 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
/tmp/junifer/tmplf2ptgjx/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_95f883e0-ca9b-11f0-a076-ebd5e38fbbd368jimr0x/prewarp_parcellation.nii.gz is a file
/tmp/junifer/tmplf2ptgjx/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_95f883e0-ca9b-11f0-a076-ebd5e38fbbd368jimr0x/MNI152Lin_T1w.nii.gz is a file
/home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 is a file
/tmp/junifer/tmplf2ptgjx/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_95f883e0-ca9b-11f0-a076-ebd5e38fbbd368jimr0x/parcellation_warped.nii.gz is a prefix
Singularity args: --bind /tmp/junifer/tmplf2ptgjx/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_95f883e0-ca9b-11f0-a076-ebd5e38fbbd368jimr0x:/data/mount_1 --bind /tmp/junifer/tmplf2ptgjx/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_95f883e0-ca9b-11f0-a076-ebd5e38fbbd368jimr0x:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmplf2ptgjx/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_95f883e0-ca9b-11f0-a076-ebd5e38fbbd368jimr0x:/data/mount_4
Corrected args for ANTS: antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz
Running command: /data/group/appliedml/tools/ants_2.5.0/singularity_cmd exec --cleanenv --bind /tmp/junifer/tmplf2ptgjx/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_95f883e0-ca9b-11f0-a076-ebd5e38fbbd368jimr0x:/data/mount_1 --bind /tmp/junifer/tmplf2ptgjx/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_95f883e0-ca9b-11f0-a076-ebd5e38fbbd368jimr0x:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmplf2ptgjx/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_95f883e0-ca9b-11f0-a076-ebd5e38fbbd368jimr0x:/data/mount_4 /data/group/appliedml/tools/ants_2.5.0/ants_v2.5.0.sif antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz

2025-11-26 08:43:32,654 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpwa8g2uae/test.sqlite (multiple output)>
2025-11-26 08:43:32,680 - JUNIFER - INFO - Fitting marker Schaefer200x17_Mean
2025-11-26 08:43:32,680 - JUNIFER - INFO - Computing VBM_GM
2025-11-26 08:43:32,680 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-11-26 08:43:32,680 - JUNIFER - INFO - Parcellation parameters:
2025-11-26 08:43:32,680 - JUNIFER - INFO -      resolution: None
2025-11-26 08:43:32,680 - JUNIFER - INFO -      n_rois: 200
2025-11-26 08:43:32,680 - JUNIFER - INFO -      yeo_networks: 17
2025-11-26 08:43:32,680 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-11-26 08:43:32,820 - JUNIFER - INFO - Loading parcellation: /home/synchon/junifer_data/v2/parcellations/Schaefer2018/Yeo2011/Schaefer2018_200Parcels_17Networks_order_FSLMNI152_1mm.nii.gz
2025-11-26 08:43:34,612 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-11-26 08:43:35,702 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmplf2ptgjx/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_9bc6694a-ca9b-11f0-a076-ebd5e38fbbd36p5pb1th/prewarp_parcellation.nii.gz -r /tmp/junifer/tmplf2ptgjx/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_9bc6694a-ca9b-11f0-a076-ebd5e38fbbd36p5pb1th/MNI152Lin_T1w.nii.gz -t /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmplf2ptgjx/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_9bc6694a-ca9b-11f0-a076-ebd5e38fbbd36p5pb1th/parcellation_warped.nii.gz
2025-11-26 08:43:44,979 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
/tmp/junifer/tmplf2ptgjx/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_9bc6694a-ca9b-11f0-a076-ebd5e38fbbd36p5pb1th/prewarp_parcellation.nii.gz is a file
/tmp/junifer/tmplf2ptgjx/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_9bc6694a-ca9b-11f0-a076-ebd5e38fbbd36p5pb1th/MNI152Lin_T1w.nii.gz is a file
/home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 is a file
/tmp/junifer/tmplf2ptgjx/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_9bc6694a-ca9b-11f0-a076-ebd5e38fbbd36p5pb1th/parcellation_warped.nii.gz is a prefix
Singularity args: --bind /tmp/junifer/tmplf2ptgjx/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_9bc6694a-ca9b-11f0-a076-ebd5e38fbbd36p5pb1th:/data/mount_1 --bind /tmp/junifer/tmplf2ptgjx/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_9bc6694a-ca9b-11f0-a076-ebd5e38fbbd36p5pb1th:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmplf2ptgjx/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_9bc6694a-ca9b-11f0-a076-ebd5e38fbbd36p5pb1th:/data/mount_4
Corrected args for ANTS: antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz
Running command: /data/group/appliedml/tools/ants_2.5.0/singularity_cmd exec --cleanenv --bind /tmp/junifer/tmplf2ptgjx/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_9bc6694a-ca9b-11f0-a076-ebd5e38fbbd36p5pb1th:/data/mount_1 --bind /tmp/junifer/tmplf2ptgjx/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_9bc6694a-ca9b-11f0-a076-ebd5e38fbbd36p5pb1th:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmplf2ptgjx/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_9bc6694a-ca9b-11f0-a076-ebd5e38fbbd36p5pb1th:/data/mount_4 /data/group/appliedml/tools/ants_2.5.0/ants_v2.5.0.sif antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz

2025-11-26 08:43:46,234 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpwa8g2uae/test.sqlite (multiple output)>
2025-11-26 08:43:46,270 - JUNIFER - INFO - Marker collection fitting done
2025-11-26 08:43:46,271 - JUNIFER - INFO - Getting element sub-05
2025-11-26 08:43:46,271 - JUNIFER - INFO - Fitting pipeline
2025-11-26 08:43:46,271 - JUNIFER - INFO - Reading VBM_GM from /home/synchon/nilearn_data/oasis1/OAS1_0005_MR1/mwrc1OAS1_0005_MR1_mpr_anon_fslswapdim_bet.nii.gz
2025-11-26 08:43:46,271 - JUNIFER - INFO - VBM_GM is of type NIFTI
2025-11-26 08:43:46,273 - JUNIFER - INFO - Fitting marker Schaefer100x17_TrimMean80
2025-11-26 08:43:46,273 - JUNIFER - INFO - Computing VBM_GM
2025-11-26 08:43:46,273 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-11-26 08:43:46,273 - JUNIFER - INFO - Parcellation parameters:
2025-11-26 08:43:46,273 - JUNIFER - INFO -      resolution: None
2025-11-26 08:43:46,273 - JUNIFER - INFO -      n_rois: 100
2025-11-26 08:43:46,273 - JUNIFER - INFO -      yeo_networks: 17
2025-11-26 08:43:46,273 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-11-26 08:43:46,398 - JUNIFER - INFO - Loading parcellation: /home/synchon/junifer_data/v2/parcellations/Schaefer2018/Yeo2011/Schaefer2018_100Parcels_17Networks_order_FSLMNI152_1mm.nii.gz
2025-11-26 08:43:48,193 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-11-26 08:43:49,280 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp_jwlu4uz/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_a3ddb08e-ca9b-11f0-a076-ebd5e38fbbd37v_7eez6/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp_jwlu4uz/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_a3ddb08e-ca9b-11f0-a076-ebd5e38fbbd37v_7eez6/MNI152Lin_T1w.nii.gz -t /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmp_jwlu4uz/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_a3ddb08e-ca9b-11f0-a076-ebd5e38fbbd37v_7eez6/parcellation_warped.nii.gz
2025-11-26 08:43:54,597 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
/tmp/junifer/tmp_jwlu4uz/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_a3ddb08e-ca9b-11f0-a076-ebd5e38fbbd37v_7eez6/prewarp_parcellation.nii.gz is a file
/tmp/junifer/tmp_jwlu4uz/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_a3ddb08e-ca9b-11f0-a076-ebd5e38fbbd37v_7eez6/MNI152Lin_T1w.nii.gz is a file
/home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 is a file
/tmp/junifer/tmp_jwlu4uz/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_a3ddb08e-ca9b-11f0-a076-ebd5e38fbbd37v_7eez6/parcellation_warped.nii.gz is a prefix
Singularity args: --bind /tmp/junifer/tmp_jwlu4uz/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_a3ddb08e-ca9b-11f0-a076-ebd5e38fbbd37v_7eez6:/data/mount_1 --bind /tmp/junifer/tmp_jwlu4uz/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_a3ddb08e-ca9b-11f0-a076-ebd5e38fbbd37v_7eez6:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmp_jwlu4uz/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_a3ddb08e-ca9b-11f0-a076-ebd5e38fbbd37v_7eez6:/data/mount_4
Corrected args for ANTS: antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz
Running command: /data/group/appliedml/tools/ants_2.5.0/singularity_cmd exec --cleanenv --bind /tmp/junifer/tmp_jwlu4uz/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_a3ddb08e-ca9b-11f0-a076-ebd5e38fbbd37v_7eez6:/data/mount_1 --bind /tmp/junifer/tmp_jwlu4uz/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_a3ddb08e-ca9b-11f0-a076-ebd5e38fbbd37v_7eez6:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmp_jwlu4uz/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_a3ddb08e-ca9b-11f0-a076-ebd5e38fbbd37v_7eez6:/data/mount_4 /data/group/appliedml/tools/ants_2.5.0/ants_v2.5.0.sif antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz

2025-11-26 08:43:55,898 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpwa8g2uae/test.sqlite (multiple output)>
2025-11-26 08:43:55,925 - JUNIFER - INFO - Fitting marker Schaefer200x17_Mean
2025-11-26 08:43:55,925 - JUNIFER - INFO - Computing VBM_GM
2025-11-26 08:43:55,925 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-11-26 08:43:55,925 - JUNIFER - INFO - Parcellation parameters:
2025-11-26 08:43:55,925 - JUNIFER - INFO -      resolution: None
2025-11-26 08:43:55,925 - JUNIFER - INFO -      n_rois: 200
2025-11-26 08:43:55,925 - JUNIFER - INFO -      yeo_networks: 17
2025-11-26 08:43:55,925 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-11-26 08:43:56,056 - JUNIFER - INFO - Loading parcellation: /home/synchon/junifer_data/v2/parcellations/Schaefer2018/Yeo2011/Schaefer2018_200Parcels_17Networks_order_FSLMNI152_1mm.nii.gz
2025-11-26 08:43:57,858 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-11-26 08:43:58,947 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp_jwlu4uz/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_a99f9dde-ca9b-11f0-a076-ebd5e38fbbd3sa0vei9j/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp_jwlu4uz/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_a99f9dde-ca9b-11f0-a076-ebd5e38fbbd3sa0vei9j/MNI152Lin_T1w.nii.gz -t /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmp_jwlu4uz/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_a99f9dde-ca9b-11f0-a076-ebd5e38fbbd3sa0vei9j/parcellation_warped.nii.gz
2025-11-26 08:44:08,158 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
/tmp/junifer/tmp_jwlu4uz/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_a99f9dde-ca9b-11f0-a076-ebd5e38fbbd3sa0vei9j/prewarp_parcellation.nii.gz is a file
/tmp/junifer/tmp_jwlu4uz/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_a99f9dde-ca9b-11f0-a076-ebd5e38fbbd3sa0vei9j/MNI152Lin_T1w.nii.gz is a file
/home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 is a file
/tmp/junifer/tmp_jwlu4uz/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_a99f9dde-ca9b-11f0-a076-ebd5e38fbbd3sa0vei9j/parcellation_warped.nii.gz is a prefix
Singularity args: --bind /tmp/junifer/tmp_jwlu4uz/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_a99f9dde-ca9b-11f0-a076-ebd5e38fbbd3sa0vei9j:/data/mount_1 --bind /tmp/junifer/tmp_jwlu4uz/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_a99f9dde-ca9b-11f0-a076-ebd5e38fbbd3sa0vei9j:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmp_jwlu4uz/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_a99f9dde-ca9b-11f0-a076-ebd5e38fbbd3sa0vei9j:/data/mount_4
Corrected args for ANTS: antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz
Running command: /data/group/appliedml/tools/ants_2.5.0/singularity_cmd exec --cleanenv --bind /tmp/junifer/tmp_jwlu4uz/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_a99f9dde-ca9b-11f0-a076-ebd5e38fbbd3sa0vei9j:/data/mount_1 --bind /tmp/junifer/tmp_jwlu4uz/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_a99f9dde-ca9b-11f0-a076-ebd5e38fbbd3sa0vei9j:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmp_jwlu4uz/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_a99f9dde-ca9b-11f0-a076-ebd5e38fbbd3sa0vei9j:/data/mount_4 /data/group/appliedml/tools/ants_2.5.0/ants_v2.5.0.sif antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz

2025-11-26 08:44:09,403 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpwa8g2uae/test.sqlite (multiple output)>
2025-11-26 08:44:09,440 - JUNIFER - INFO - Marker collection fitting done
2025-11-26 08:44:09,441 - JUNIFER - INFO - Getting element sub-06
2025-11-26 08:44:09,441 - JUNIFER - INFO - Fitting pipeline
2025-11-26 08:44:09,441 - JUNIFER - INFO - Reading VBM_GM from /home/synchon/nilearn_data/oasis1/OAS1_0006_MR1/mwrc1OAS1_0006_MR1_mpr_anon_fslswapdim_bet.nii.gz
2025-11-26 08:44:09,441 - JUNIFER - INFO - VBM_GM is of type NIFTI
2025-11-26 08:44:09,443 - JUNIFER - INFO - Fitting marker Schaefer100x17_TrimMean80
2025-11-26 08:44:09,443 - JUNIFER - INFO - Computing VBM_GM
2025-11-26 08:44:09,443 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-11-26 08:44:09,443 - JUNIFER - INFO - Parcellation parameters:
2025-11-26 08:44:09,443 - JUNIFER - INFO -      resolution: None
2025-11-26 08:44:09,443 - JUNIFER - INFO -      n_rois: 100
2025-11-26 08:44:09,443 - JUNIFER - INFO -      yeo_networks: 17
2025-11-26 08:44:09,443 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-11-26 08:44:09,570 - JUNIFER - INFO - Loading parcellation: /home/synchon/junifer_data/v2/parcellations/Schaefer2018/Yeo2011/Schaefer2018_100Parcels_17Networks_order_FSLMNI152_1mm.nii.gz
2025-11-26 08:44:11,348 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-11-26 08:44:12,433 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpmsjsv39d/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_b1ad2794-ca9b-11f0-a076-ebd5e38fbbd3yfycfh3f/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpmsjsv39d/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_b1ad2794-ca9b-11f0-a076-ebd5e38fbbd3yfycfh3f/MNI152Lin_T1w.nii.gz -t /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpmsjsv39d/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_b1ad2794-ca9b-11f0-a076-ebd5e38fbbd3yfycfh3f/parcellation_warped.nii.gz
2025-11-26 08:44:17,711 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
/tmp/junifer/tmpmsjsv39d/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_b1ad2794-ca9b-11f0-a076-ebd5e38fbbd3yfycfh3f/prewarp_parcellation.nii.gz is a file
/tmp/junifer/tmpmsjsv39d/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_b1ad2794-ca9b-11f0-a076-ebd5e38fbbd3yfycfh3f/MNI152Lin_T1w.nii.gz is a file
/home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 is a file
/tmp/junifer/tmpmsjsv39d/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_b1ad2794-ca9b-11f0-a076-ebd5e38fbbd3yfycfh3f/parcellation_warped.nii.gz is a prefix
Singularity args: --bind /tmp/junifer/tmpmsjsv39d/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_b1ad2794-ca9b-11f0-a076-ebd5e38fbbd3yfycfh3f:/data/mount_1 --bind /tmp/junifer/tmpmsjsv39d/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_b1ad2794-ca9b-11f0-a076-ebd5e38fbbd3yfycfh3f:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmpmsjsv39d/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_b1ad2794-ca9b-11f0-a076-ebd5e38fbbd3yfycfh3f:/data/mount_4
Corrected args for ANTS: antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz
Running command: /data/group/appliedml/tools/ants_2.5.0/singularity_cmd exec --cleanenv --bind /tmp/junifer/tmpmsjsv39d/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_b1ad2794-ca9b-11f0-a076-ebd5e38fbbd3yfycfh3f:/data/mount_1 --bind /tmp/junifer/tmpmsjsv39d/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_b1ad2794-ca9b-11f0-a076-ebd5e38fbbd3yfycfh3f:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmpmsjsv39d/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_b1ad2794-ca9b-11f0-a076-ebd5e38fbbd3yfycfh3f:/data/mount_4 /data/group/appliedml/tools/ants_2.5.0/ants_v2.5.0.sif antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz

2025-11-26 08:44:19,021 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpwa8g2uae/test.sqlite (multiple output)>
2025-11-26 08:44:19,045 - JUNIFER - INFO - Fitting marker Schaefer200x17_Mean
2025-11-26 08:44:19,045 - JUNIFER - INFO - Computing VBM_GM
2025-11-26 08:44:19,046 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-11-26 08:44:19,046 - JUNIFER - INFO - Parcellation parameters:
2025-11-26 08:44:19,046 - JUNIFER - INFO -      resolution: None
2025-11-26 08:44:19,046 - JUNIFER - INFO -      n_rois: 200
2025-11-26 08:44:19,046 - JUNIFER - INFO -      yeo_networks: 17
2025-11-26 08:44:19,046 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-11-26 08:44:19,172 - JUNIFER - INFO - Loading parcellation: /home/synchon/junifer_data/v2/parcellations/Schaefer2018/Yeo2011/Schaefer2018_200Parcels_17Networks_order_FSLMNI152_1mm.nii.gz
2025-11-26 08:44:20,973 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-11-26 08:44:22,062 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpmsjsv39d/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_b766b984-ca9b-11f0-a076-ebd5e38fbbd3a5vp6hwi/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpmsjsv39d/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_b766b984-ca9b-11f0-a076-ebd5e38fbbd3a5vp6hwi/MNI152Lin_T1w.nii.gz -t /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpmsjsv39d/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_b766b984-ca9b-11f0-a076-ebd5e38fbbd3a5vp6hwi/parcellation_warped.nii.gz
2025-11-26 08:44:31,222 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
/tmp/junifer/tmpmsjsv39d/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_b766b984-ca9b-11f0-a076-ebd5e38fbbd3a5vp6hwi/prewarp_parcellation.nii.gz is a file
/tmp/junifer/tmpmsjsv39d/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_b766b984-ca9b-11f0-a076-ebd5e38fbbd3a5vp6hwi/MNI152Lin_T1w.nii.gz is a file
/home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 is a file
/tmp/junifer/tmpmsjsv39d/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_b766b984-ca9b-11f0-a076-ebd5e38fbbd3a5vp6hwi/parcellation_warped.nii.gz is a prefix
Singularity args: --bind /tmp/junifer/tmpmsjsv39d/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_b766b984-ca9b-11f0-a076-ebd5e38fbbd3a5vp6hwi:/data/mount_1 --bind /tmp/junifer/tmpmsjsv39d/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_b766b984-ca9b-11f0-a076-ebd5e38fbbd3a5vp6hwi:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmpmsjsv39d/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_b766b984-ca9b-11f0-a076-ebd5e38fbbd3a5vp6hwi:/data/mount_4
Corrected args for ANTS: antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz
Running command: /data/group/appliedml/tools/ants_2.5.0/singularity_cmd exec --cleanenv --bind /tmp/junifer/tmpmsjsv39d/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_b766b984-ca9b-11f0-a076-ebd5e38fbbd3a5vp6hwi:/data/mount_1 --bind /tmp/junifer/tmpmsjsv39d/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_b766b984-ca9b-11f0-a076-ebd5e38fbbd3a5vp6hwi:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmpmsjsv39d/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_b766b984-ca9b-11f0-a076-ebd5e38fbbd3a5vp6hwi:/data/mount_4 /data/group/appliedml/tools/ants_2.5.0/ants_v2.5.0.sif antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz

2025-11-26 08:44:32,463 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpwa8g2uae/test.sqlite (multiple output)>
2025-11-26 08:44:32,499 - JUNIFER - INFO - Marker collection fitting done
2025-11-26 08:44:32,500 - JUNIFER - INFO - Getting element sub-07
2025-11-26 08:44:32,500 - JUNIFER - INFO - Fitting pipeline
2025-11-26 08:44:32,501 - JUNIFER - INFO - Reading VBM_GM from /home/synchon/nilearn_data/oasis1/OAS1_0007_MR1/mwrc1OAS1_0007_MR1_mpr_anon_fslswapdim_bet.nii.gz
2025-11-26 08:44:32,501 - JUNIFER - INFO - VBM_GM is of type NIFTI
2025-11-26 08:44:32,503 - JUNIFER - INFO - Fitting marker Schaefer100x17_TrimMean80
2025-11-26 08:44:32,503 - JUNIFER - INFO - Computing VBM_GM
2025-11-26 08:44:32,503 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-11-26 08:44:32,503 - JUNIFER - INFO - Parcellation parameters:
2025-11-26 08:44:32,503 - JUNIFER - INFO -      resolution: None
2025-11-26 08:44:32,503 - JUNIFER - INFO -      n_rois: 100
2025-11-26 08:44:32,503 - JUNIFER - INFO -      yeo_networks: 17
2025-11-26 08:44:32,503 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-11-26 08:44:32,722 - JUNIFER - INFO - Loading parcellation: /home/synchon/junifer_data/v2/parcellations/Schaefer2018/Yeo2011/Schaefer2018_100Parcels_17Networks_order_FSLMNI152_1mm.nii.gz
2025-11-26 08:44:34,505 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-11-26 08:44:35,592 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp065k1hdw/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_bf799920-ca9b-11f0-a076-ebd5e38fbbd3bnfu4nod/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp065k1hdw/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_bf799920-ca9b-11f0-a076-ebd5e38fbbd3bnfu4nod/MNI152Lin_T1w.nii.gz -t /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmp065k1hdw/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_bf799920-ca9b-11f0-a076-ebd5e38fbbd3bnfu4nod/parcellation_warped.nii.gz
2025-11-26 08:44:40,860 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
/tmp/junifer/tmp065k1hdw/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_bf799920-ca9b-11f0-a076-ebd5e38fbbd3bnfu4nod/prewarp_parcellation.nii.gz is a file
/tmp/junifer/tmp065k1hdw/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_bf799920-ca9b-11f0-a076-ebd5e38fbbd3bnfu4nod/MNI152Lin_T1w.nii.gz is a file
/home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 is a file
/tmp/junifer/tmp065k1hdw/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_bf799920-ca9b-11f0-a076-ebd5e38fbbd3bnfu4nod/parcellation_warped.nii.gz is a prefix
Singularity args: --bind /tmp/junifer/tmp065k1hdw/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_bf799920-ca9b-11f0-a076-ebd5e38fbbd3bnfu4nod:/data/mount_1 --bind /tmp/junifer/tmp065k1hdw/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_bf799920-ca9b-11f0-a076-ebd5e38fbbd3bnfu4nod:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmp065k1hdw/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_bf799920-ca9b-11f0-a076-ebd5e38fbbd3bnfu4nod:/data/mount_4
Corrected args for ANTS: antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz
Running command: /data/group/appliedml/tools/ants_2.5.0/singularity_cmd exec --cleanenv --bind /tmp/junifer/tmp065k1hdw/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_bf799920-ca9b-11f0-a076-ebd5e38fbbd3bnfu4nod:/data/mount_1 --bind /tmp/junifer/tmp065k1hdw/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_bf799920-ca9b-11f0-a076-ebd5e38fbbd3bnfu4nod:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmp065k1hdw/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_bf799920-ca9b-11f0-a076-ebd5e38fbbd3bnfu4nod:/data/mount_4 /data/group/appliedml/tools/ants_2.5.0/ants_v2.5.0.sif antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz

2025-11-26 08:44:42,185 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpwa8g2uae/test.sqlite (multiple output)>
2025-11-26 08:44:42,210 - JUNIFER - INFO - Fitting marker Schaefer200x17_Mean
2025-11-26 08:44:42,210 - JUNIFER - INFO - Computing VBM_GM
2025-11-26 08:44:42,210 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-11-26 08:44:42,210 - JUNIFER - INFO - Parcellation parameters:
2025-11-26 08:44:42,210 - JUNIFER - INFO -      resolution: None
2025-11-26 08:44:42,210 - JUNIFER - INFO -      n_rois: 200
2025-11-26 08:44:42,210 - JUNIFER - INFO -      yeo_networks: 17
2025-11-26 08:44:42,210 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-11-26 08:44:42,343 - JUNIFER - INFO - Loading parcellation: /home/synchon/junifer_data/v2/parcellations/Schaefer2018/Yeo2011/Schaefer2018_200Parcels_17Networks_order_FSLMNI152_1mm.nii.gz
2025-11-26 08:44:44,137 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-11-26 08:44:45,227 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp065k1hdw/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_c5365164-ca9b-11f0-a076-ebd5e38fbbd3700vrqwi/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp065k1hdw/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_c5365164-ca9b-11f0-a076-ebd5e38fbbd3700vrqwi/MNI152Lin_T1w.nii.gz -t /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmp065k1hdw/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_c5365164-ca9b-11f0-a076-ebd5e38fbbd3700vrqwi/parcellation_warped.nii.gz
2025-11-26 08:44:54,406 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
/tmp/junifer/tmp065k1hdw/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_c5365164-ca9b-11f0-a076-ebd5e38fbbd3700vrqwi/prewarp_parcellation.nii.gz is a file
/tmp/junifer/tmp065k1hdw/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_c5365164-ca9b-11f0-a076-ebd5e38fbbd3700vrqwi/MNI152Lin_T1w.nii.gz is a file
/home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 is a file
/tmp/junifer/tmp065k1hdw/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_c5365164-ca9b-11f0-a076-ebd5e38fbbd3700vrqwi/parcellation_warped.nii.gz is a prefix
Singularity args: --bind /tmp/junifer/tmp065k1hdw/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_c5365164-ca9b-11f0-a076-ebd5e38fbbd3700vrqwi:/data/mount_1 --bind /tmp/junifer/tmp065k1hdw/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_c5365164-ca9b-11f0-a076-ebd5e38fbbd3700vrqwi:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmp065k1hdw/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_c5365164-ca9b-11f0-a076-ebd5e38fbbd3700vrqwi:/data/mount_4
Corrected args for ANTS: antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz
Running command: /data/group/appliedml/tools/ants_2.5.0/singularity_cmd exec --cleanenv --bind /tmp/junifer/tmp065k1hdw/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_c5365164-ca9b-11f0-a076-ebd5e38fbbd3700vrqwi:/data/mount_1 --bind /tmp/junifer/tmp065k1hdw/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_c5365164-ca9b-11f0-a076-ebd5e38fbbd3700vrqwi:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmp065k1hdw/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_c5365164-ca9b-11f0-a076-ebd5e38fbbd3700vrqwi:/data/mount_4 /data/group/appliedml/tools/ants_2.5.0/ants_v2.5.0.sif antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz

2025-11-26 08:44:55,667 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpwa8g2uae/test.sqlite (multiple output)>
2025-11-26 08:44:55,703 - JUNIFER - INFO - Marker collection fitting done
2025-11-26 08:44:55,704 - JUNIFER - INFO - Getting element sub-08
2025-11-26 08:44:55,704 - JUNIFER - INFO - Fitting pipeline
2025-11-26 08:44:55,704 - JUNIFER - INFO - Reading VBM_GM from /home/synchon/nilearn_data/oasis1/OAS1_0009_MR1/mwrc1OAS1_0009_MR1_mpr_anon_fslswapdim_bet.nii.gz
2025-11-26 08:44:55,704 - JUNIFER - INFO - VBM_GM is of type NIFTI
2025-11-26 08:44:55,706 - JUNIFER - INFO - Fitting marker Schaefer100x17_TrimMean80
2025-11-26 08:44:55,706 - JUNIFER - INFO - Computing VBM_GM
2025-11-26 08:44:55,707 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-11-26 08:44:55,707 - JUNIFER - INFO - Parcellation parameters:
2025-11-26 08:44:55,707 - JUNIFER - INFO -      resolution: None
2025-11-26 08:44:55,707 - JUNIFER - INFO -      n_rois: 100
2025-11-26 08:44:55,707 - JUNIFER - INFO -      yeo_networks: 17
2025-11-26 08:44:55,707 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-11-26 08:44:55,849 - JUNIFER - INFO - Loading parcellation: /home/synchon/junifer_data/v2/parcellations/Schaefer2018/Yeo2011/Schaefer2018_100Parcels_17Networks_order_FSLMNI152_1mm.nii.gz
2025-11-26 08:44:57,649 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-11-26 08:44:58,736 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpn4npt0ek/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_cd42eb60-ca9b-11f0-a076-ebd5e38fbbd3p96fgp0u/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpn4npt0ek/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_cd42eb60-ca9b-11f0-a076-ebd5e38fbbd3p96fgp0u/MNI152Lin_T1w.nii.gz -t /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpn4npt0ek/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_cd42eb60-ca9b-11f0-a076-ebd5e38fbbd3p96fgp0u/parcellation_warped.nii.gz
2025-11-26 08:45:03,990 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
/tmp/junifer/tmpn4npt0ek/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_cd42eb60-ca9b-11f0-a076-ebd5e38fbbd3p96fgp0u/prewarp_parcellation.nii.gz is a file
/tmp/junifer/tmpn4npt0ek/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_cd42eb60-ca9b-11f0-a076-ebd5e38fbbd3p96fgp0u/MNI152Lin_T1w.nii.gz is a file
/home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 is a file
/tmp/junifer/tmpn4npt0ek/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_cd42eb60-ca9b-11f0-a076-ebd5e38fbbd3p96fgp0u/parcellation_warped.nii.gz is a prefix
Singularity args: --bind /tmp/junifer/tmpn4npt0ek/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_cd42eb60-ca9b-11f0-a076-ebd5e38fbbd3p96fgp0u:/data/mount_1 --bind /tmp/junifer/tmpn4npt0ek/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_cd42eb60-ca9b-11f0-a076-ebd5e38fbbd3p96fgp0u:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmpn4npt0ek/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_cd42eb60-ca9b-11f0-a076-ebd5e38fbbd3p96fgp0u:/data/mount_4
Corrected args for ANTS: antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz
Running command: /data/group/appliedml/tools/ants_2.5.0/singularity_cmd exec --cleanenv --bind /tmp/junifer/tmpn4npt0ek/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_cd42eb60-ca9b-11f0-a076-ebd5e38fbbd3p96fgp0u:/data/mount_1 --bind /tmp/junifer/tmpn4npt0ek/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_cd42eb60-ca9b-11f0-a076-ebd5e38fbbd3p96fgp0u:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmpn4npt0ek/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_cd42eb60-ca9b-11f0-a076-ebd5e38fbbd3p96fgp0u:/data/mount_4 /data/group/appliedml/tools/ants_2.5.0/ants_v2.5.0.sif antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz

2025-11-26 08:45:05,251 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpwa8g2uae/test.sqlite (multiple output)>
2025-11-26 08:45:05,278 - JUNIFER - INFO - Fitting marker Schaefer200x17_Mean
2025-11-26 08:45:05,278 - JUNIFER - INFO - Computing VBM_GM
2025-11-26 08:45:05,278 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-11-26 08:45:05,278 - JUNIFER - INFO - Parcellation parameters:
2025-11-26 08:45:05,278 - JUNIFER - INFO -      resolution: None
2025-11-26 08:45:05,278 - JUNIFER - INFO -      n_rois: 200
2025-11-26 08:45:05,279 - JUNIFER - INFO -      yeo_networks: 17
2025-11-26 08:45:05,279 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-11-26 08:45:05,418 - JUNIFER - INFO - Loading parcellation: /home/synchon/junifer_data/v2/parcellations/Schaefer2018/Yeo2011/Schaefer2018_200Parcels_17Networks_order_FSLMNI152_1mm.nii.gz
2025-11-26 08:45:07,213 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-11-26 08:45:08,304 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpn4npt0ek/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_d2f76a9a-ca9b-11f0-a076-ebd5e38fbbd3zqr630ig/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpn4npt0ek/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_d2f76a9a-ca9b-11f0-a076-ebd5e38fbbd3zqr630ig/MNI152Lin_T1w.nii.gz -t /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpn4npt0ek/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_d2f76a9a-ca9b-11f0-a076-ebd5e38fbbd3zqr630ig/parcellation_warped.nii.gz
2025-11-26 08:45:17,620 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
/tmp/junifer/tmpn4npt0ek/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_d2f76a9a-ca9b-11f0-a076-ebd5e38fbbd3zqr630ig/prewarp_parcellation.nii.gz is a file
/tmp/junifer/tmpn4npt0ek/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_d2f76a9a-ca9b-11f0-a076-ebd5e38fbbd3zqr630ig/MNI152Lin_T1w.nii.gz is a file
/home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 is a file
/tmp/junifer/tmpn4npt0ek/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_d2f76a9a-ca9b-11f0-a076-ebd5e38fbbd3zqr630ig/parcellation_warped.nii.gz is a prefix
Singularity args: --bind /tmp/junifer/tmpn4npt0ek/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_d2f76a9a-ca9b-11f0-a076-ebd5e38fbbd3zqr630ig:/data/mount_1 --bind /tmp/junifer/tmpn4npt0ek/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_d2f76a9a-ca9b-11f0-a076-ebd5e38fbbd3zqr630ig:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmpn4npt0ek/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_d2f76a9a-ca9b-11f0-a076-ebd5e38fbbd3zqr630ig:/data/mount_4
Corrected args for ANTS: antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz
Running command: /data/group/appliedml/tools/ants_2.5.0/singularity_cmd exec --cleanenv --bind /tmp/junifer/tmpn4npt0ek/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_d2f76a9a-ca9b-11f0-a076-ebd5e38fbbd3zqr630ig:/data/mount_1 --bind /tmp/junifer/tmpn4npt0ek/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_d2f76a9a-ca9b-11f0-a076-ebd5e38fbbd3zqr630ig:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmpn4npt0ek/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_d2f76a9a-ca9b-11f0-a076-ebd5e38fbbd3zqr630ig:/data/mount_4 /data/group/appliedml/tools/ants_2.5.0/ants_v2.5.0.sif antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz

2025-11-26 08:45:18,864 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpwa8g2uae/test.sqlite (multiple output)>
2025-11-26 08:45:18,900 - JUNIFER - INFO - Marker collection fitting done
2025-11-26 08:45:18,901 - JUNIFER - INFO - Getting element sub-09
2025-11-26 08:45:18,901 - JUNIFER - INFO - Fitting pipeline
2025-11-26 08:45:18,901 - JUNIFER - INFO - Reading VBM_GM from /home/synchon/nilearn_data/oasis1/OAS1_0010_MR1/mwrc1OAS1_0010_MR1_mpr_anon_fslswapdim_bet.nii.gz
2025-11-26 08:45:18,902 - JUNIFER - INFO - VBM_GM is of type NIFTI
2025-11-26 08:45:18,903 - JUNIFER - INFO - Fitting marker Schaefer100x17_TrimMean80
2025-11-26 08:45:18,903 - JUNIFER - INFO - Computing VBM_GM
2025-11-26 08:45:18,904 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-11-26 08:45:18,904 - JUNIFER - INFO - Parcellation parameters:
2025-11-26 08:45:18,904 - JUNIFER - INFO -      resolution: None
2025-11-26 08:45:18,904 - JUNIFER - INFO -      n_rois: 100
2025-11-26 08:45:18,904 - JUNIFER - INFO -      yeo_networks: 17
2025-11-26 08:45:18,904 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-11-26 08:45:19,039 - JUNIFER - INFO - Loading parcellation: /home/synchon/junifer_data/v2/parcellations/Schaefer2018/Yeo2011/Schaefer2018_100Parcels_17Networks_order_FSLMNI152_1mm.nii.gz
2025-11-26 08:45:20,836 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-11-26 08:45:21,923 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpieg1cqes/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_db174e0c-ca9b-11f0-a076-ebd5e38fbbd37remx3fv/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpieg1cqes/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_db174e0c-ca9b-11f0-a076-ebd5e38fbbd37remx3fv/MNI152Lin_T1w.nii.gz -t /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpieg1cqes/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_db174e0c-ca9b-11f0-a076-ebd5e38fbbd37remx3fv/parcellation_warped.nii.gz
2025-11-26 08:45:27,191 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
/tmp/junifer/tmpieg1cqes/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_db174e0c-ca9b-11f0-a076-ebd5e38fbbd37remx3fv/prewarp_parcellation.nii.gz is a file
/tmp/junifer/tmpieg1cqes/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_db174e0c-ca9b-11f0-a076-ebd5e38fbbd37remx3fv/MNI152Lin_T1w.nii.gz is a file
/home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 is a file
/tmp/junifer/tmpieg1cqes/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_db174e0c-ca9b-11f0-a076-ebd5e38fbbd37remx3fv/parcellation_warped.nii.gz is a prefix
Singularity args: --bind /tmp/junifer/tmpieg1cqes/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_db174e0c-ca9b-11f0-a076-ebd5e38fbbd37remx3fv:/data/mount_1 --bind /tmp/junifer/tmpieg1cqes/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_db174e0c-ca9b-11f0-a076-ebd5e38fbbd37remx3fv:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmpieg1cqes/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_db174e0c-ca9b-11f0-a076-ebd5e38fbbd37remx3fv:/data/mount_4
Corrected args for ANTS: antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz
Running command: /data/group/appliedml/tools/ants_2.5.0/singularity_cmd exec --cleanenv --bind /tmp/junifer/tmpieg1cqes/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_db174e0c-ca9b-11f0-a076-ebd5e38fbbd37remx3fv:/data/mount_1 --bind /tmp/junifer/tmpieg1cqes/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_db174e0c-ca9b-11f0-a076-ebd5e38fbbd37remx3fv:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmpieg1cqes/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_db174e0c-ca9b-11f0-a076-ebd5e38fbbd37remx3fv:/data/mount_4 /data/group/appliedml/tools/ants_2.5.0/ants_v2.5.0.sif antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz

2025-11-26 08:45:28,478 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpwa8g2uae/test.sqlite (multiple output)>
2025-11-26 08:45:28,502 - JUNIFER - INFO - Fitting marker Schaefer200x17_Mean
2025-11-26 08:45:28,502 - JUNIFER - INFO - Computing VBM_GM
2025-11-26 08:45:28,502 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-11-26 08:45:28,502 - JUNIFER - INFO - Parcellation parameters:
2025-11-26 08:45:28,502 - JUNIFER - INFO -      resolution: None
2025-11-26 08:45:28,502 - JUNIFER - INFO -      n_rois: 200
2025-11-26 08:45:28,502 - JUNIFER - INFO -      yeo_networks: 17
2025-11-26 08:45:28,502 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-11-26 08:45:28,638 - JUNIFER - INFO - Loading parcellation: /home/synchon/junifer_data/v2/parcellations/Schaefer2018/Yeo2011/Schaefer2018_200Parcels_17Networks_order_FSLMNI152_1mm.nii.gz
2025-11-26 08:45:30,439 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-11-26 08:45:31,536 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpieg1cqes/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_e0cdee00-ca9b-11f0-a076-ebd5e38fbbd3m5rsyl0f/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpieg1cqes/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_e0cdee00-ca9b-11f0-a076-ebd5e38fbbd3m5rsyl0f/MNI152Lin_T1w.nii.gz -t /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpieg1cqes/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_e0cdee00-ca9b-11f0-a076-ebd5e38fbbd3m5rsyl0f/parcellation_warped.nii.gz
2025-11-26 08:45:40,749 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
/tmp/junifer/tmpieg1cqes/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_e0cdee00-ca9b-11f0-a076-ebd5e38fbbd3m5rsyl0f/prewarp_parcellation.nii.gz is a file
/tmp/junifer/tmpieg1cqes/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_e0cdee00-ca9b-11f0-a076-ebd5e38fbbd3m5rsyl0f/MNI152Lin_T1w.nii.gz is a file
/home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 is a file
/tmp/junifer/tmpieg1cqes/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_e0cdee00-ca9b-11f0-a076-ebd5e38fbbd3m5rsyl0f/parcellation_warped.nii.gz is a prefix
Singularity args: --bind /tmp/junifer/tmpieg1cqes/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_e0cdee00-ca9b-11f0-a076-ebd5e38fbbd3m5rsyl0f:/data/mount_1 --bind /tmp/junifer/tmpieg1cqes/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_e0cdee00-ca9b-11f0-a076-ebd5e38fbbd3m5rsyl0f:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmpieg1cqes/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_e0cdee00-ca9b-11f0-a076-ebd5e38fbbd3m5rsyl0f:/data/mount_4
Corrected args for ANTS: antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz
Running command: /data/group/appliedml/tools/ants_2.5.0/singularity_cmd exec --cleanenv --bind /tmp/junifer/tmpieg1cqes/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_e0cdee00-ca9b-11f0-a076-ebd5e38fbbd3m5rsyl0f:/data/mount_1 --bind /tmp/junifer/tmpieg1cqes/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_e0cdee00-ca9b-11f0-a076-ebd5e38fbbd3m5rsyl0f:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmpieg1cqes/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_e0cdee00-ca9b-11f0-a076-ebd5e38fbbd3m5rsyl0f:/data/mount_4 /data/group/appliedml/tools/ants_2.5.0/ants_v2.5.0.sif antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz

2025-11-26 08:45:42,028 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpwa8g2uae/test.sqlite (multiple output)>
2025-11-26 08:45:42,064 - JUNIFER - INFO - Marker collection fitting done
2025-11-26 08:45:42,066 - JUNIFER - INFO - Getting element sub-10
2025-11-26 08:45:42,066 - JUNIFER - INFO - Fitting pipeline
2025-11-26 08:45:42,066 - JUNIFER - INFO - Reading VBM_GM from /home/synchon/nilearn_data/oasis1/OAS1_0011_MR1/mwrc1OAS1_0011_MR1_mpr_anon_fslswapdim_bet.nii.gz
2025-11-26 08:45:42,066 - JUNIFER - INFO - VBM_GM is of type NIFTI
2025-11-26 08:45:42,068 - JUNIFER - INFO - Fitting marker Schaefer100x17_TrimMean80
2025-11-26 08:45:42,068 - JUNIFER - INFO - Computing VBM_GM
2025-11-26 08:45:42,068 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-11-26 08:45:42,068 - JUNIFER - INFO - Parcellation parameters:
2025-11-26 08:45:42,068 - JUNIFER - INFO -      resolution: None
2025-11-26 08:45:42,068 - JUNIFER - INFO -      n_rois: 100
2025-11-26 08:45:42,068 - JUNIFER - INFO -      yeo_networks: 17
2025-11-26 08:45:42,068 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-11-26 08:45:42,300 - JUNIFER - INFO - Loading parcellation: /home/synchon/junifer_data/v2/parcellations/Schaefer2018/Yeo2011/Schaefer2018_100Parcels_17Networks_order_FSLMNI152_1mm.nii.gz
2025-11-26 08:45:44,092 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-11-26 08:45:45,182 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpjnj7mb3v/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_e8f274ac-ca9b-11f0-a076-ebd5e38fbbd36e8dmb0y/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpjnj7mb3v/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_e8f274ac-ca9b-11f0-a076-ebd5e38fbbd36e8dmb0y/MNI152Lin_T1w.nii.gz -t /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpjnj7mb3v/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_e8f274ac-ca9b-11f0-a076-ebd5e38fbbd36e8dmb0y/parcellation_warped.nii.gz
2025-11-26 08:45:50,427 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
/tmp/junifer/tmpjnj7mb3v/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_e8f274ac-ca9b-11f0-a076-ebd5e38fbbd36e8dmb0y/prewarp_parcellation.nii.gz is a file
/tmp/junifer/tmpjnj7mb3v/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_e8f274ac-ca9b-11f0-a076-ebd5e38fbbd36e8dmb0y/MNI152Lin_T1w.nii.gz is a file
/home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 is a file
/tmp/junifer/tmpjnj7mb3v/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_e8f274ac-ca9b-11f0-a076-ebd5e38fbbd36e8dmb0y/parcellation_warped.nii.gz is a prefix
Singularity args: --bind /tmp/junifer/tmpjnj7mb3v/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_e8f274ac-ca9b-11f0-a076-ebd5e38fbbd36e8dmb0y:/data/mount_1 --bind /tmp/junifer/tmpjnj7mb3v/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_e8f274ac-ca9b-11f0-a076-ebd5e38fbbd36e8dmb0y:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmpjnj7mb3v/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_e8f274ac-ca9b-11f0-a076-ebd5e38fbbd36e8dmb0y:/data/mount_4
Corrected args for ANTS: antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz
Running command: /data/group/appliedml/tools/ants_2.5.0/singularity_cmd exec --cleanenv --bind /tmp/junifer/tmpjnj7mb3v/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_e8f274ac-ca9b-11f0-a076-ebd5e38fbbd36e8dmb0y:/data/mount_1 --bind /tmp/junifer/tmpjnj7mb3v/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_e8f274ac-ca9b-11f0-a076-ebd5e38fbbd36e8dmb0y:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmpjnj7mb3v/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_e8f274ac-ca9b-11f0-a076-ebd5e38fbbd36e8dmb0y:/data/mount_4 /data/group/appliedml/tools/ants_2.5.0/ants_v2.5.0.sif antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz

2025-11-26 08:45:51,680 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpwa8g2uae/test.sqlite (multiple output)>
2025-11-26 08:45:51,705 - JUNIFER - INFO - Fitting marker Schaefer200x17_Mean
2025-11-26 08:45:51,705 - JUNIFER - INFO - Computing VBM_GM
2025-11-26 08:45:51,705 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-11-26 08:45:51,705 - JUNIFER - INFO - Parcellation parameters:
2025-11-26 08:45:51,705 - JUNIFER - INFO -      resolution: None
2025-11-26 08:45:51,705 - JUNIFER - INFO -      n_rois: 200
2025-11-26 08:45:51,705 - JUNIFER - INFO -      yeo_networks: 17
2025-11-26 08:45:51,705 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-11-26 08:45:51,842 - JUNIFER - INFO - Loading parcellation: /home/synchon/junifer_data/v2/parcellations/Schaefer2018/Yeo2011/Schaefer2018_200Parcels_17Networks_order_FSLMNI152_1mm.nii.gz
2025-11-26 08:45:53,636 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-11-26 08:45:54,725 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpjnj7mb3v/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_eea2f1f6-ca9b-11f0-a076-ebd5e38fbbd34oha51wm/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpjnj7mb3v/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_eea2f1f6-ca9b-11f0-a076-ebd5e38fbbd34oha51wm/MNI152Lin_T1w.nii.gz -t /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpjnj7mb3v/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_eea2f1f6-ca9b-11f0-a076-ebd5e38fbbd34oha51wm/parcellation_warped.nii.gz
2025-11-26 08:46:03,899 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
/tmp/junifer/tmpjnj7mb3v/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_eea2f1f6-ca9b-11f0-a076-ebd5e38fbbd34oha51wm/prewarp_parcellation.nii.gz is a file
/tmp/junifer/tmpjnj7mb3v/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_eea2f1f6-ca9b-11f0-a076-ebd5e38fbbd34oha51wm/MNI152Lin_T1w.nii.gz is a file
/home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 is a file
/tmp/junifer/tmpjnj7mb3v/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_eea2f1f6-ca9b-11f0-a076-ebd5e38fbbd34oha51wm/parcellation_warped.nii.gz is a prefix
Singularity args: --bind /tmp/junifer/tmpjnj7mb3v/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_eea2f1f6-ca9b-11f0-a076-ebd5e38fbbd34oha51wm:/data/mount_1 --bind /tmp/junifer/tmpjnj7mb3v/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_eea2f1f6-ca9b-11f0-a076-ebd5e38fbbd34oha51wm:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmpjnj7mb3v/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_eea2f1f6-ca9b-11f0-a076-ebd5e38fbbd34oha51wm:/data/mount_4
Corrected args for ANTS: antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz
Running command: /data/group/appliedml/tools/ants_2.5.0/singularity_cmd exec --cleanenv --bind /tmp/junifer/tmpjnj7mb3v/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_eea2f1f6-ca9b-11f0-a076-ebd5e38fbbd34oha51wm:/data/mount_1 --bind /tmp/junifer/tmpjnj7mb3v/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_eea2f1f6-ca9b-11f0-a076-ebd5e38fbbd34oha51wm:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmpjnj7mb3v/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_eea2f1f6-ca9b-11f0-a076-ebd5e38fbbd34oha51wm:/data/mount_4 /data/group/appliedml/tools/ants_2.5.0/ants_v2.5.0.sif antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz

2025-11-26 08:46:05,141 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpwa8g2uae/test.sqlite (multiple output)>
2025-11-26 08:46:05,177 - JUNIFER - INFO - Marker collection fitting done
2025-11-26 08:46:05,178 - JUNIFER - INFO - Collecting data using SQLiteFeatureStorage
2025-11-26 08:46:05,178 - JUNIFER - INFO - Collecting data from /tmp/tmpwa8g2uae/*test.sqlite

file: 0it [00:00, ?it/s]

feature:   0%|          | 0/2 [00:00<?, ?it/s]
feature: 100%|██████████| 2/2 [00:00<00:00, 22.53it/s]


feature:   0%|          | 0/2 [00:00<?, ?it/s]
feature: 100%|██████████| 2/2 [00:00<00:00, 25.05it/s]

file: 2it [00:00, 10.70it/s]

feature:   0%|          | 0/2 [00:00<?, ?it/s]
feature: 100%|██████████| 2/2 [00:00<00:00, 25.01it/s]


feature:   0%|          | 0/2 [00:00<?, ?it/s]
feature: 100%|██████████| 2/2 [00:00<00:00, 25.07it/s]

file: 4it [00:00, 11.05it/s]

feature:   0%|          | 0/2 [00:00<?, ?it/s]

feature: 100%|██████████| 2/2 [00:00<00:00, 10.10it/s]
feature: 100%|██████████| 2/2 [00:00<00:00, 10.08it/s]


feature:   0%|          | 0/2 [00:00<?, ?it/s]
feature: 100%|██████████| 2/2 [00:00<00:00, 25.23it/s]

file: 6it [00:00,  8.58it/s]

feature:   0%|          | 0/2 [00:00<?, ?it/s]
feature: 100%|██████████| 2/2 [00:00<00:00, 25.23it/s]


feature:   0%|          | 0/2 [00:00<?, ?it/s]
feature: 100%|██████████| 2/2 [00:00<00:00, 25.15it/s]

file: 8it [00:00,  9.50it/s]

feature:   0%|          | 0/2 [00:00<?, ?it/s]
feature: 100%|██████████| 2/2 [00:00<00:00, 25.04it/s]


feature:   0%|          | 0/2 [00:00<?, ?it/s]

feature: 100%|██████████| 2/2 [00:00<00:00,  9.93it/s]
feature: 100%|██████████| 2/2 [00:00<00:00,  9.92it/s]

file: 10it [00:01,  8.25it/s]
file: 10it [00:01,  8.82it/s]
2025-11-26 08:46:06,312 - JUNIFER - INFO - Collect done

Using julearn for machine learning: We predict the age given our vbm features and sex as a confound.

X = list(df_vbm.columns)
df_vbm[y] = age
df_vbm[confound] = sex

X_types = {
    "features": X,
    "confound": confound,
}

creator = PipelineCreator(problem_type="regression", apply_to="features")
creator.add("zscore", apply_to=["features", "confound"])
creator.add("confound_removal", apply_to="features", confounds="confound")
creator.add("ridge")

scores = run_cross_validation(
    X=X + [confound],
    y=y,
    X_types=X_types,
    data=df_vbm,
    model=creator,
    cv=3,
)
print(scores)

   fit_time  score_time  test_score  n_train  n_test  repeat  fold                          cv_mdsum
0  0.098416    0.012304    0.261686        6       4       0     0  509497eb21da473048117e0c6704d3ea
1  0.087528    0.012003   -4.392809        7       3       0     1  509497eb21da473048117e0c6704d3ea
2  0.087795    0.011976    0.733589        7       3       0     2  509497eb21da473048117e0c6704d3ea

Interpretation of results: Doing machine learning with only 10 datapoints is not meaningful. This explains the big variation in scores for different cross-validation folds.

Total running time of the script: (3 minutes 54.330 seconds)

Gallery generated by Sphinx-Gallery