8.3. UKB VBM GMD Extraction

Authors: Federico Raimondo

License: BSD 3 clause

2025-11-26 08:16:47,278 - JUNIFER - INFO - Registering OasisVBMTestingDataGrabber in datagrabber
2025-11-26 08:16:47,278 - JUNIFER - INFO - Registering SPMAuditoryTestingDataGrabber in datagrabber
2025-11-26 08:16:47,278 - JUNIFER - INFO - Registering PartlyCloudyTestingDataGrabber in datagrabber
2025-11-26 08:16:52,644 - JUNIFER - INFO - Registering ParcelAggregation in marker
2025-11-26 08:16:52,653 - JUNIFER - INFO - Registering SQLiteFeatureStorage in storage
2025-11-26 08:16:52,653 - JUNIFER - INFO - Validating Marker Collection
2025-11-26 08:16:52,653 - JUNIFER - INFO - DataGrabber output type: ['VBM_GM']
2025-11-26 08:16:52,653 - JUNIFER - INFO - Validating Data Reader:
2025-11-26 08:16:52,653 - JUNIFER - INFO - Data Reader output type: ['VBM_GM']
2025-11-26 08:16:52,653 - JUNIFER - INFO - Validating Marker: Schaefer1000x7_TrimMean80
2025-11-26 08:16:52,653 - JUNIFER - INFO - Marker output type: ['vector']
2025-11-26 08:16:52,653 - JUNIFER - INFO - Validating storage for Schaefer1000x7_TrimMean80
2025-11-26 08:16:52,653 - JUNIFER - INFO - Validating Marker: Schaefer1000x7_Mean
2025-11-26 08:16:52,653 - JUNIFER - INFO - Marker output type: ['vector']
2025-11-26 08:16:52,653 - JUNIFER - INFO - Validating storage for Schaefer1000x7_Mean
2025-11-26 08:16:52,653 - JUNIFER - INFO - Validating Marker: Schaefer1000x7_Std
2025-11-26 08:16:52,653 - JUNIFER - INFO - Marker output type: ['vector']
2025-11-26 08:16:52,653 - JUNIFER - INFO - Validating storage for Schaefer1000x7_Std
2025-11-26 08:16:52,668 - JUNIFER - INFO - Getting element sub-01
2025-11-26 08:16:52,668 - JUNIFER - INFO - Fitting pipeline
2025-11-26 08:16:52,668 - JUNIFER - INFO - Reading VBM_GM from /home/synchon/nilearn_data/oasis1/OAS1_0001_MR1/mwrc1OAS1_0001_MR1_mpr_anon_fslswapdim_bet.nii.gz
2025-11-26 08:16:52,668 - JUNIFER - INFO - VBM_GM is of type NIFTI
2025-11-26 08:16:52,670 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2025-11-26 08:16:52,670 - JUNIFER - INFO - Computing VBM_GM
2025-11-26 08:16:52,670 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-11-26 08:16:52,670 - JUNIFER - INFO - Parcellation parameters:
2025-11-26 08:16:52,670 - JUNIFER - INFO -      resolution: None
2025-11-26 08:16:52,670 - JUNIFER - INFO -      n_rois: 1000
2025-11-26 08:16:52,670 - JUNIFER - INFO -      yeo_networks: 7
2025-11-26 08:16:52,670 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-11-26 08:16:53,006 - JUNIFER - INFO - Loading parcellation: /home/synchon/junifer_data/v2/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-11-26 08:17:42,205 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-11-26 08:17:43,324 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmphlyaynp4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_e237bbc6-ca97-11f0-a076-ebd5e38fbbd33zb78xnk/prewarp_parcellation.nii.gz -r /tmp/junifer/tmphlyaynp4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_e237bbc6-ca97-11f0-a076-ebd5e38fbbd33zb78xnk/MNI152Lin_T1w.nii.gz -t /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmphlyaynp4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_e237bbc6-ca97-11f0-a076-ebd5e38fbbd33zb78xnk/parcellation_warped.nii.gz
2025-11-26 08:18:26,250 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
/tmp/junifer/tmphlyaynp4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_e237bbc6-ca97-11f0-a076-ebd5e38fbbd33zb78xnk/prewarp_parcellation.nii.gz is a file
/tmp/junifer/tmphlyaynp4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_e237bbc6-ca97-11f0-a076-ebd5e38fbbd33zb78xnk/MNI152Lin_T1w.nii.gz is a file
/home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 is a file
/tmp/junifer/tmphlyaynp4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_e237bbc6-ca97-11f0-a076-ebd5e38fbbd33zb78xnk/parcellation_warped.nii.gz is a prefix
Singularity args: --bind /tmp/junifer/tmphlyaynp4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_e237bbc6-ca97-11f0-a076-ebd5e38fbbd33zb78xnk:/data/mount_1 --bind /tmp/junifer/tmphlyaynp4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_e237bbc6-ca97-11f0-a076-ebd5e38fbbd33zb78xnk:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmphlyaynp4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_e237bbc6-ca97-11f0-a076-ebd5e38fbbd33zb78xnk:/data/mount_4
Corrected args for ANTS: antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz
Running command: /data/group/appliedml/tools/ants_2.5.0/singularity_cmd exec --cleanenv --bind /tmp/junifer/tmphlyaynp4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_e237bbc6-ca97-11f0-a076-ebd5e38fbbd33zb78xnk:/data/mount_1 --bind /tmp/junifer/tmphlyaynp4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_e237bbc6-ca97-11f0-a076-ebd5e38fbbd33zb78xnk:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmphlyaynp4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_e237bbc6-ca97-11f0-a076-ebd5e38fbbd33zb78xnk:/data/mount_4 /data/group/appliedml/tools/ants_2.5.0/ants_v2.5.0.sif antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz

2025-11-26 08:18:27,637 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp1bceczyh/test.sqlite (multiple output)>
2025-11-26 08:18:27,740 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2025-11-26 08:18:27,740 - JUNIFER - INFO - Computing VBM_GM
2025-11-26 08:18:27,740 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-11-26 08:18:27,740 - JUNIFER - INFO - Parcellation parameters:
2025-11-26 08:18:27,740 - JUNIFER - INFO -      resolution: None
2025-11-26 08:18:27,740 - JUNIFER - INFO -      n_rois: 1000
2025-11-26 08:18:27,740 - JUNIFER - INFO -      yeo_networks: 7
2025-11-26 08:18:27,740 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-11-26 08:18:27,950 - JUNIFER - INFO - Loading parcellation: /home/synchon/junifer_data/v2/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-11-26 08:18:29,843 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-11-26 08:18:30,958 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmphlyaynp4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_1ace3ece-ca98-11f0-a076-ebd5e38fbbd3601kdyzq/prewarp_parcellation.nii.gz -r /tmp/junifer/tmphlyaynp4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_1ace3ece-ca98-11f0-a076-ebd5e38fbbd3601kdyzq/MNI152Lin_T1w.nii.gz -t /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmphlyaynp4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_1ace3ece-ca98-11f0-a076-ebd5e38fbbd3601kdyzq/parcellation_warped.nii.gz
2025-11-26 08:19:14,012 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
/tmp/junifer/tmphlyaynp4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_1ace3ece-ca98-11f0-a076-ebd5e38fbbd3601kdyzq/prewarp_parcellation.nii.gz is a file
/tmp/junifer/tmphlyaynp4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_1ace3ece-ca98-11f0-a076-ebd5e38fbbd3601kdyzq/MNI152Lin_T1w.nii.gz is a file
/home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 is a file
/tmp/junifer/tmphlyaynp4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_1ace3ece-ca98-11f0-a076-ebd5e38fbbd3601kdyzq/parcellation_warped.nii.gz is a prefix
Singularity args: --bind /tmp/junifer/tmphlyaynp4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_1ace3ece-ca98-11f0-a076-ebd5e38fbbd3601kdyzq:/data/mount_1 --bind /tmp/junifer/tmphlyaynp4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_1ace3ece-ca98-11f0-a076-ebd5e38fbbd3601kdyzq:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmphlyaynp4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_1ace3ece-ca98-11f0-a076-ebd5e38fbbd3601kdyzq:/data/mount_4
Corrected args for ANTS: antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz
Running command: /data/group/appliedml/tools/ants_2.5.0/singularity_cmd exec --cleanenv --bind /tmp/junifer/tmphlyaynp4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_1ace3ece-ca98-11f0-a076-ebd5e38fbbd3601kdyzq:/data/mount_1 --bind /tmp/junifer/tmphlyaynp4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_1ace3ece-ca98-11f0-a076-ebd5e38fbbd3601kdyzq:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmphlyaynp4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_1ace3ece-ca98-11f0-a076-ebd5e38fbbd3601kdyzq:/data/mount_4 /data/group/appliedml/tools/ants_2.5.0/ants_v2.5.0.sif antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz

2025-11-26 08:19:15,331 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp1bceczyh/test.sqlite (multiple output)>
2025-11-26 08:19:15,449 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2025-11-26 08:19:15,449 - JUNIFER - INFO - Computing VBM_GM
2025-11-26 08:19:15,449 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-11-26 08:19:15,449 - JUNIFER - INFO - Parcellation parameters:
2025-11-26 08:19:15,449 - JUNIFER - INFO -      resolution: None
2025-11-26 08:19:15,449 - JUNIFER - INFO -      n_rois: 1000
2025-11-26 08:19:15,449 - JUNIFER - INFO -      yeo_networks: 7
2025-11-26 08:19:15,449 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-11-26 08:19:15,675 - JUNIFER - INFO - Loading parcellation: /home/synchon/junifer_data/v2/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-11-26 08:19:17,593 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-11-26 08:19:18,705 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmphlyaynp4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_374049f8-ca98-11f0-a076-ebd5e38fbbd3q4py1t8l/prewarp_parcellation.nii.gz -r /tmp/junifer/tmphlyaynp4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_374049f8-ca98-11f0-a076-ebd5e38fbbd3q4py1t8l/MNI152Lin_T1w.nii.gz -t /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmphlyaynp4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_374049f8-ca98-11f0-a076-ebd5e38fbbd3q4py1t8l/parcellation_warped.nii.gz
2025-11-26 08:20:01,923 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
/tmp/junifer/tmphlyaynp4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_374049f8-ca98-11f0-a076-ebd5e38fbbd3q4py1t8l/prewarp_parcellation.nii.gz is a file
/tmp/junifer/tmphlyaynp4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_374049f8-ca98-11f0-a076-ebd5e38fbbd3q4py1t8l/MNI152Lin_T1w.nii.gz is a file
/home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 is a file
/tmp/junifer/tmphlyaynp4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_374049f8-ca98-11f0-a076-ebd5e38fbbd3q4py1t8l/parcellation_warped.nii.gz is a prefix
Singularity args: --bind /tmp/junifer/tmphlyaynp4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_374049f8-ca98-11f0-a076-ebd5e38fbbd3q4py1t8l:/data/mount_1 --bind /tmp/junifer/tmphlyaynp4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_374049f8-ca98-11f0-a076-ebd5e38fbbd3q4py1t8l:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmphlyaynp4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_374049f8-ca98-11f0-a076-ebd5e38fbbd3q4py1t8l:/data/mount_4
Corrected args for ANTS: antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz
Running command: /data/group/appliedml/tools/ants_2.5.0/singularity_cmd exec --cleanenv --bind /tmp/junifer/tmphlyaynp4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_374049f8-ca98-11f0-a076-ebd5e38fbbd3q4py1t8l:/data/mount_1 --bind /tmp/junifer/tmphlyaynp4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_374049f8-ca98-11f0-a076-ebd5e38fbbd3q4py1t8l:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmphlyaynp4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_374049f8-ca98-11f0-a076-ebd5e38fbbd3q4py1t8l:/data/mount_4 /data/group/appliedml/tools/ants_2.5.0/ants_v2.5.0.sif antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz

2025-11-26 08:20:03,288 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp1bceczyh/test.sqlite (multiple output)>
2025-11-26 08:20:03,402 - JUNIFER - INFO - Marker collection fitting done
2025-11-26 08:20:03,405 - JUNIFER - INFO - Getting element sub-02
2025-11-26 08:20:03,405 - JUNIFER - INFO - Fitting pipeline
2025-11-26 08:20:03,405 - JUNIFER - INFO - Reading VBM_GM from /home/synchon/nilearn_data/oasis1/OAS1_0002_MR1/mwrc1OAS1_0002_MR1_mpr_anon_fslswapdim_bet.nii.gz
2025-11-26 08:20:03,405 - JUNIFER - INFO - VBM_GM is of type NIFTI
2025-11-26 08:20:03,411 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2025-11-26 08:20:03,411 - JUNIFER - INFO - Computing VBM_GM
2025-11-26 08:20:03,411 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-11-26 08:20:03,411 - JUNIFER - INFO - Parcellation parameters:
2025-11-26 08:20:03,411 - JUNIFER - INFO -      resolution: None
2025-11-26 08:20:03,411 - JUNIFER - INFO -      n_rois: 1000
2025-11-26 08:20:03,411 - JUNIFER - INFO -      yeo_networks: 7
2025-11-26 08:20:03,411 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-11-26 08:20:03,631 - JUNIFER - INFO - Loading parcellation: /home/synchon/junifer_data/v2/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-11-26 08:20:05,539 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-11-26 08:20:06,645 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpcy4_9nuw/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_53d5cc3c-ca98-11f0-a076-ebd5e38fbbd37wet2nbq/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpcy4_9nuw/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_53d5cc3c-ca98-11f0-a076-ebd5e38fbbd37wet2nbq/MNI152Lin_T1w.nii.gz -t /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpcy4_9nuw/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_53d5cc3c-ca98-11f0-a076-ebd5e38fbbd37wet2nbq/parcellation_warped.nii.gz
2025-11-26 08:20:49,340 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
/tmp/junifer/tmpcy4_9nuw/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_53d5cc3c-ca98-11f0-a076-ebd5e38fbbd37wet2nbq/prewarp_parcellation.nii.gz is a file
/tmp/junifer/tmpcy4_9nuw/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_53d5cc3c-ca98-11f0-a076-ebd5e38fbbd37wet2nbq/MNI152Lin_T1w.nii.gz is a file
/home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 is a file
/tmp/junifer/tmpcy4_9nuw/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_53d5cc3c-ca98-11f0-a076-ebd5e38fbbd37wet2nbq/parcellation_warped.nii.gz is a prefix
Singularity args: --bind /tmp/junifer/tmpcy4_9nuw/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_53d5cc3c-ca98-11f0-a076-ebd5e38fbbd37wet2nbq:/data/mount_1 --bind /tmp/junifer/tmpcy4_9nuw/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_53d5cc3c-ca98-11f0-a076-ebd5e38fbbd37wet2nbq:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmpcy4_9nuw/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_53d5cc3c-ca98-11f0-a076-ebd5e38fbbd37wet2nbq:/data/mount_4
Corrected args for ANTS: antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz
Running command: /data/group/appliedml/tools/ants_2.5.0/singularity_cmd exec --cleanenv --bind /tmp/junifer/tmpcy4_9nuw/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_53d5cc3c-ca98-11f0-a076-ebd5e38fbbd37wet2nbq:/data/mount_1 --bind /tmp/junifer/tmpcy4_9nuw/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_53d5cc3c-ca98-11f0-a076-ebd5e38fbbd37wet2nbq:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmpcy4_9nuw/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_53d5cc3c-ca98-11f0-a076-ebd5e38fbbd37wet2nbq:/data/mount_4 /data/group/appliedml/tools/ants_2.5.0/ants_v2.5.0.sif antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz

2025-11-26 08:20:50,672 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp1bceczyh/test.sqlite (multiple output)>
2025-11-26 08:20:50,773 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2025-11-26 08:20:50,773 - JUNIFER - INFO - Computing VBM_GM
2025-11-26 08:20:50,773 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-11-26 08:20:50,773 - JUNIFER - INFO - Parcellation parameters:
2025-11-26 08:20:50,773 - JUNIFER - INFO -      resolution: None
2025-11-26 08:20:50,773 - JUNIFER - INFO -      n_rois: 1000
2025-11-26 08:20:50,773 - JUNIFER - INFO -      yeo_networks: 7
2025-11-26 08:20:50,773 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-11-26 08:20:50,996 - JUNIFER - INFO - Loading parcellation: /home/synchon/junifer_data/v2/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-11-26 08:20:52,908 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-11-26 08:20:54,015 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpcy4_9nuw/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_7010edbe-ca98-11f0-a076-ebd5e38fbbd33l63coj7/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpcy4_9nuw/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_7010edbe-ca98-11f0-a076-ebd5e38fbbd33l63coj7/MNI152Lin_T1w.nii.gz -t /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpcy4_9nuw/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_7010edbe-ca98-11f0-a076-ebd5e38fbbd33l63coj7/parcellation_warped.nii.gz
2025-11-26 08:21:36,347 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
/tmp/junifer/tmpcy4_9nuw/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_7010edbe-ca98-11f0-a076-ebd5e38fbbd33l63coj7/prewarp_parcellation.nii.gz is a file
/tmp/junifer/tmpcy4_9nuw/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_7010edbe-ca98-11f0-a076-ebd5e38fbbd33l63coj7/MNI152Lin_T1w.nii.gz is a file
/home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 is a file
/tmp/junifer/tmpcy4_9nuw/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_7010edbe-ca98-11f0-a076-ebd5e38fbbd33l63coj7/parcellation_warped.nii.gz is a prefix
Singularity args: --bind /tmp/junifer/tmpcy4_9nuw/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_7010edbe-ca98-11f0-a076-ebd5e38fbbd33l63coj7:/data/mount_1 --bind /tmp/junifer/tmpcy4_9nuw/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_7010edbe-ca98-11f0-a076-ebd5e38fbbd33l63coj7:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmpcy4_9nuw/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_7010edbe-ca98-11f0-a076-ebd5e38fbbd33l63coj7:/data/mount_4
Corrected args for ANTS: antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz
Running command: /data/group/appliedml/tools/ants_2.5.0/singularity_cmd exec --cleanenv --bind /tmp/junifer/tmpcy4_9nuw/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_7010edbe-ca98-11f0-a076-ebd5e38fbbd33l63coj7:/data/mount_1 --bind /tmp/junifer/tmpcy4_9nuw/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_7010edbe-ca98-11f0-a076-ebd5e38fbbd33l63coj7:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmpcy4_9nuw/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_7010edbe-ca98-11f0-a076-ebd5e38fbbd33l63coj7:/data/mount_4 /data/group/appliedml/tools/ants_2.5.0/ants_v2.5.0.sif antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz

2025-11-26 08:21:37,660 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp1bceczyh/test.sqlite (multiple output)>
2025-11-26 08:21:37,769 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2025-11-26 08:21:37,769 - JUNIFER - INFO - Computing VBM_GM
2025-11-26 08:21:37,769 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-11-26 08:21:37,769 - JUNIFER - INFO - Parcellation parameters:
2025-11-26 08:21:37,769 - JUNIFER - INFO -      resolution: None
2025-11-26 08:21:37,770 - JUNIFER - INFO -      n_rois: 1000
2025-11-26 08:21:37,770 - JUNIFER - INFO -      yeo_networks: 7
2025-11-26 08:21:37,770 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-11-26 08:21:37,898 - JUNIFER - INFO - Loading parcellation: /home/synchon/junifer_data/v2/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-11-26 08:21:39,808 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-11-26 08:21:40,912 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpcy4_9nuw/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_8c05a898-ca98-11f0-a076-ebd5e38fbbd3eqt06fv7/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpcy4_9nuw/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_8c05a898-ca98-11f0-a076-ebd5e38fbbd3eqt06fv7/MNI152Lin_T1w.nii.gz -t /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpcy4_9nuw/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_8c05a898-ca98-11f0-a076-ebd5e38fbbd3eqt06fv7/parcellation_warped.nii.gz
2025-11-26 08:22:23,166 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
/tmp/junifer/tmpcy4_9nuw/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_8c05a898-ca98-11f0-a076-ebd5e38fbbd3eqt06fv7/prewarp_parcellation.nii.gz is a file
/tmp/junifer/tmpcy4_9nuw/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_8c05a898-ca98-11f0-a076-ebd5e38fbbd3eqt06fv7/MNI152Lin_T1w.nii.gz is a file
/home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 is a file
/tmp/junifer/tmpcy4_9nuw/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_8c05a898-ca98-11f0-a076-ebd5e38fbbd3eqt06fv7/parcellation_warped.nii.gz is a prefix
Singularity args: --bind /tmp/junifer/tmpcy4_9nuw/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_8c05a898-ca98-11f0-a076-ebd5e38fbbd3eqt06fv7:/data/mount_1 --bind /tmp/junifer/tmpcy4_9nuw/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_8c05a898-ca98-11f0-a076-ebd5e38fbbd3eqt06fv7:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmpcy4_9nuw/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_8c05a898-ca98-11f0-a076-ebd5e38fbbd3eqt06fv7:/data/mount_4
Corrected args for ANTS: antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz
Running command: /data/group/appliedml/tools/ants_2.5.0/singularity_cmd exec --cleanenv --bind /tmp/junifer/tmpcy4_9nuw/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_8c05a898-ca98-11f0-a076-ebd5e38fbbd3eqt06fv7:/data/mount_1 --bind /tmp/junifer/tmpcy4_9nuw/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_8c05a898-ca98-11f0-a076-ebd5e38fbbd3eqt06fv7:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmpcy4_9nuw/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_8c05a898-ca98-11f0-a076-ebd5e38fbbd3eqt06fv7:/data/mount_4 /data/group/appliedml/tools/ants_2.5.0/ants_v2.5.0.sif antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz

2025-11-26 08:22:24,518 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp1bceczyh/test.sqlite (multiple output)>
2025-11-26 08:22:24,630 - JUNIFER - INFO - Marker collection fitting done
2025-11-26 08:22:24,632 - JUNIFER - INFO - Getting element sub-03
2025-11-26 08:22:24,632 - JUNIFER - INFO - Fitting pipeline
2025-11-26 08:22:24,632 - JUNIFER - INFO - Reading VBM_GM from /home/synchon/nilearn_data/oasis1/OAS1_0003_MR1/mwrc1OAS1_0003_MR1_mpr_anon_fslswapdim_bet.nii.gz
2025-11-26 08:22:24,632 - JUNIFER - INFO - VBM_GM is of type NIFTI
2025-11-26 08:22:24,640 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2025-11-26 08:22:24,640 - JUNIFER - INFO - Computing VBM_GM
2025-11-26 08:22:24,640 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-11-26 08:22:24,640 - JUNIFER - INFO - Parcellation parameters:
2025-11-26 08:22:24,640 - JUNIFER - INFO -      resolution: None
2025-11-26 08:22:24,640 - JUNIFER - INFO -      n_rois: 1000
2025-11-26 08:22:24,640 - JUNIFER - INFO -      yeo_networks: 7
2025-11-26 08:22:24,640 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-11-26 08:22:24,869 - JUNIFER - INFO - Loading parcellation: /home/synchon/junifer_data/v2/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-11-26 08:22:26,789 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-11-26 08:22:27,893 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpe5hq3xqx/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a804e43c-ca98-11f0-a076-ebd5e38fbbd35h94eul6/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpe5hq3xqx/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a804e43c-ca98-11f0-a076-ebd5e38fbbd35h94eul6/MNI152Lin_T1w.nii.gz -t /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpe5hq3xqx/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a804e43c-ca98-11f0-a076-ebd5e38fbbd35h94eul6/parcellation_warped.nii.gz
2025-11-26 08:23:10,096 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
/tmp/junifer/tmpe5hq3xqx/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a804e43c-ca98-11f0-a076-ebd5e38fbbd35h94eul6/prewarp_parcellation.nii.gz is a file
/tmp/junifer/tmpe5hq3xqx/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a804e43c-ca98-11f0-a076-ebd5e38fbbd35h94eul6/MNI152Lin_T1w.nii.gz is a file
/home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 is a file
/tmp/junifer/tmpe5hq3xqx/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a804e43c-ca98-11f0-a076-ebd5e38fbbd35h94eul6/parcellation_warped.nii.gz is a prefix
Singularity args: --bind /tmp/junifer/tmpe5hq3xqx/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a804e43c-ca98-11f0-a076-ebd5e38fbbd35h94eul6:/data/mount_1 --bind /tmp/junifer/tmpe5hq3xqx/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a804e43c-ca98-11f0-a076-ebd5e38fbbd35h94eul6:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmpe5hq3xqx/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a804e43c-ca98-11f0-a076-ebd5e38fbbd35h94eul6:/data/mount_4
Corrected args for ANTS: antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz
Running command: /data/group/appliedml/tools/ants_2.5.0/singularity_cmd exec --cleanenv --bind /tmp/junifer/tmpe5hq3xqx/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a804e43c-ca98-11f0-a076-ebd5e38fbbd35h94eul6:/data/mount_1 --bind /tmp/junifer/tmpe5hq3xqx/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a804e43c-ca98-11f0-a076-ebd5e38fbbd35h94eul6:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmpe5hq3xqx/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a804e43c-ca98-11f0-a076-ebd5e38fbbd35h94eul6:/data/mount_4 /data/group/appliedml/tools/ants_2.5.0/ants_v2.5.0.sif antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz

2025-11-26 08:23:11,471 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp1bceczyh/test.sqlite (multiple output)>
2025-11-26 08:23:11,574 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2025-11-26 08:23:11,574 - JUNIFER - INFO - Computing VBM_GM
2025-11-26 08:23:11,575 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-11-26 08:23:11,575 - JUNIFER - INFO - Parcellation parameters:
2025-11-26 08:23:11,575 - JUNIFER - INFO -      resolution: None
2025-11-26 08:23:11,575 - JUNIFER - INFO -      n_rois: 1000
2025-11-26 08:23:11,575 - JUNIFER - INFO -      yeo_networks: 7
2025-11-26 08:23:11,575 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-11-26 08:23:11,727 - JUNIFER - INFO - Loading parcellation: /home/synchon/junifer_data/v2/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-11-26 08:23:13,655 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-11-26 08:23:14,758 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpe5hq3xqx/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_c3f2c150-ca98-11f0-a076-ebd5e38fbbd3d_3zzfs0/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpe5hq3xqx/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_c3f2c150-ca98-11f0-a076-ebd5e38fbbd3d_3zzfs0/MNI152Lin_T1w.nii.gz -t /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpe5hq3xqx/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_c3f2c150-ca98-11f0-a076-ebd5e38fbbd3d_3zzfs0/parcellation_warped.nii.gz
2025-11-26 08:23:56,994 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
/tmp/junifer/tmpe5hq3xqx/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_c3f2c150-ca98-11f0-a076-ebd5e38fbbd3d_3zzfs0/prewarp_parcellation.nii.gz is a file
/tmp/junifer/tmpe5hq3xqx/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_c3f2c150-ca98-11f0-a076-ebd5e38fbbd3d_3zzfs0/MNI152Lin_T1w.nii.gz is a file
/home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 is a file
/tmp/junifer/tmpe5hq3xqx/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_c3f2c150-ca98-11f0-a076-ebd5e38fbbd3d_3zzfs0/parcellation_warped.nii.gz is a prefix
Singularity args: --bind /tmp/junifer/tmpe5hq3xqx/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_c3f2c150-ca98-11f0-a076-ebd5e38fbbd3d_3zzfs0:/data/mount_1 --bind /tmp/junifer/tmpe5hq3xqx/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_c3f2c150-ca98-11f0-a076-ebd5e38fbbd3d_3zzfs0:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmpe5hq3xqx/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_c3f2c150-ca98-11f0-a076-ebd5e38fbbd3d_3zzfs0:/data/mount_4
Corrected args for ANTS: antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz
Running command: /data/group/appliedml/tools/ants_2.5.0/singularity_cmd exec --cleanenv --bind /tmp/junifer/tmpe5hq3xqx/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_c3f2c150-ca98-11f0-a076-ebd5e38fbbd3d_3zzfs0:/data/mount_1 --bind /tmp/junifer/tmpe5hq3xqx/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_c3f2c150-ca98-11f0-a076-ebd5e38fbbd3d_3zzfs0:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmpe5hq3xqx/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_c3f2c150-ca98-11f0-a076-ebd5e38fbbd3d_3zzfs0:/data/mount_4 /data/group/appliedml/tools/ants_2.5.0/ants_v2.5.0.sif antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz

2025-11-26 08:23:58,318 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp1bceczyh/test.sqlite (multiple output)>
2025-11-26 08:23:58,425 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2025-11-26 08:23:58,426 - JUNIFER - INFO - Computing VBM_GM
2025-11-26 08:23:58,426 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-11-26 08:23:58,426 - JUNIFER - INFO - Parcellation parameters:
2025-11-26 08:23:58,426 - JUNIFER - INFO -      resolution: None
2025-11-26 08:23:58,426 - JUNIFER - INFO -      n_rois: 1000
2025-11-26 08:23:58,426 - JUNIFER - INFO -      yeo_networks: 7
2025-11-26 08:23:58,426 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-11-26 08:23:58,634 - JUNIFER - INFO - Loading parcellation: /home/synchon/junifer_data/v2/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-11-26 08:24:00,575 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-11-26 08:24:01,692 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpe5hq3xqx/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_dfe83214-ca98-11f0-a076-ebd5e38fbbd3_kf3ziq2/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpe5hq3xqx/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_dfe83214-ca98-11f0-a076-ebd5e38fbbd3_kf3ziq2/MNI152Lin_T1w.nii.gz -t /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpe5hq3xqx/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_dfe83214-ca98-11f0-a076-ebd5e38fbbd3_kf3ziq2/parcellation_warped.nii.gz
2025-11-26 08:24:44,892 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
/tmp/junifer/tmpe5hq3xqx/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_dfe83214-ca98-11f0-a076-ebd5e38fbbd3_kf3ziq2/prewarp_parcellation.nii.gz is a file
/tmp/junifer/tmpe5hq3xqx/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_dfe83214-ca98-11f0-a076-ebd5e38fbbd3_kf3ziq2/MNI152Lin_T1w.nii.gz is a file
/home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 is a file
/tmp/junifer/tmpe5hq3xqx/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_dfe83214-ca98-11f0-a076-ebd5e38fbbd3_kf3ziq2/parcellation_warped.nii.gz is a prefix
Singularity args: --bind /tmp/junifer/tmpe5hq3xqx/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_dfe83214-ca98-11f0-a076-ebd5e38fbbd3_kf3ziq2:/data/mount_1 --bind /tmp/junifer/tmpe5hq3xqx/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_dfe83214-ca98-11f0-a076-ebd5e38fbbd3_kf3ziq2:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmpe5hq3xqx/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_dfe83214-ca98-11f0-a076-ebd5e38fbbd3_kf3ziq2:/data/mount_4
Corrected args for ANTS: antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz
Running command: /data/group/appliedml/tools/ants_2.5.0/singularity_cmd exec --cleanenv --bind /tmp/junifer/tmpe5hq3xqx/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_dfe83214-ca98-11f0-a076-ebd5e38fbbd3_kf3ziq2:/data/mount_1 --bind /tmp/junifer/tmpe5hq3xqx/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_dfe83214-ca98-11f0-a076-ebd5e38fbbd3_kf3ziq2:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmpe5hq3xqx/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_dfe83214-ca98-11f0-a076-ebd5e38fbbd3_kf3ziq2:/data/mount_4 /data/group/appliedml/tools/ants_2.5.0/ants_v2.5.0.sif antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz

2025-11-26 08:24:46,235 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp1bceczyh/test.sqlite (multiple output)>
2025-11-26 08:24:46,349 - JUNIFER - INFO - Marker collection fitting done
2025-11-26 08:24:46,350 - JUNIFER - INFO - Getting element sub-04
2025-11-26 08:24:46,351 - JUNIFER - INFO - Fitting pipeline
2025-11-26 08:24:46,351 - JUNIFER - INFO - Reading VBM_GM from /home/synchon/nilearn_data/oasis1/OAS1_0004_MR1/mwrc1OAS1_0004_MR1_mpr_anon_fslswapdim_bet.nii.gz
2025-11-26 08:24:46,351 - JUNIFER - INFO - VBM_GM is of type NIFTI
2025-11-26 08:24:46,357 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2025-11-26 08:24:46,357 - JUNIFER - INFO - Computing VBM_GM
2025-11-26 08:24:46,357 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-11-26 08:24:46,357 - JUNIFER - INFO - Parcellation parameters:
2025-11-26 08:24:46,358 - JUNIFER - INFO -      resolution: None
2025-11-26 08:24:46,358 - JUNIFER - INFO -      n_rois: 1000
2025-11-26 08:24:46,358 - JUNIFER - INFO -      yeo_networks: 7
2025-11-26 08:24:46,358 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-11-26 08:24:46,485 - JUNIFER - INFO - Loading parcellation: /home/synchon/junifer_data/v2/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-11-26 08:24:48,404 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-11-26 08:24:49,509 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpl0r3ryp0/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_fc6e0710-ca98-11f0-a076-ebd5e38fbbd3jrjf49xp/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpl0r3ryp0/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_fc6e0710-ca98-11f0-a076-ebd5e38fbbd3jrjf49xp/MNI152Lin_T1w.nii.gz -t /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpl0r3ryp0/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_fc6e0710-ca98-11f0-a076-ebd5e38fbbd3jrjf49xp/parcellation_warped.nii.gz
2025-11-26 08:25:31,837 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
/tmp/junifer/tmpl0r3ryp0/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_fc6e0710-ca98-11f0-a076-ebd5e38fbbd3jrjf49xp/prewarp_parcellation.nii.gz is a file
/tmp/junifer/tmpl0r3ryp0/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_fc6e0710-ca98-11f0-a076-ebd5e38fbbd3jrjf49xp/MNI152Lin_T1w.nii.gz is a file
/home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 is a file
/tmp/junifer/tmpl0r3ryp0/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_fc6e0710-ca98-11f0-a076-ebd5e38fbbd3jrjf49xp/parcellation_warped.nii.gz is a prefix
Singularity args: --bind /tmp/junifer/tmpl0r3ryp0/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_fc6e0710-ca98-11f0-a076-ebd5e38fbbd3jrjf49xp:/data/mount_1 --bind /tmp/junifer/tmpl0r3ryp0/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_fc6e0710-ca98-11f0-a076-ebd5e38fbbd3jrjf49xp:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmpl0r3ryp0/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_fc6e0710-ca98-11f0-a076-ebd5e38fbbd3jrjf49xp:/data/mount_4
Corrected args for ANTS: antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz
Running command: /data/group/appliedml/tools/ants_2.5.0/singularity_cmd exec --cleanenv --bind /tmp/junifer/tmpl0r3ryp0/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_fc6e0710-ca98-11f0-a076-ebd5e38fbbd3jrjf49xp:/data/mount_1 --bind /tmp/junifer/tmpl0r3ryp0/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_fc6e0710-ca98-11f0-a076-ebd5e38fbbd3jrjf49xp:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmpl0r3ryp0/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_fc6e0710-ca98-11f0-a076-ebd5e38fbbd3jrjf49xp:/data/mount_4 /data/group/appliedml/tools/ants_2.5.0/ants_v2.5.0.sif antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz

2025-11-26 08:25:33,179 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp1bceczyh/test.sqlite (multiple output)>
2025-11-26 08:25:33,279 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2025-11-26 08:25:33,279 - JUNIFER - INFO - Computing VBM_GM
2025-11-26 08:25:33,279 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-11-26 08:25:33,279 - JUNIFER - INFO - Parcellation parameters:
2025-11-26 08:25:33,279 - JUNIFER - INFO -      resolution: None
2025-11-26 08:25:33,279 - JUNIFER - INFO -      n_rois: 1000
2025-11-26 08:25:33,279 - JUNIFER - INFO -      yeo_networks: 7
2025-11-26 08:25:33,279 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-11-26 08:25:33,491 - JUNIFER - INFO - Loading parcellation: /home/synchon/junifer_data/v2/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-11-26 08:25:35,406 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-11-26 08:25:36,506 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpl0r3ryp0/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_18727068-ca99-11f0-a076-ebd5e38fbbd35_42k834/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpl0r3ryp0/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_18727068-ca99-11f0-a076-ebd5e38fbbd35_42k834/MNI152Lin_T1w.nii.gz -t /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpl0r3ryp0/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_18727068-ca99-11f0-a076-ebd5e38fbbd35_42k834/parcellation_warped.nii.gz
2025-11-26 08:26:18,709 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
/tmp/junifer/tmpl0r3ryp0/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_18727068-ca99-11f0-a076-ebd5e38fbbd35_42k834/prewarp_parcellation.nii.gz is a file
/tmp/junifer/tmpl0r3ryp0/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_18727068-ca99-11f0-a076-ebd5e38fbbd35_42k834/MNI152Lin_T1w.nii.gz is a file
/home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 is a file
/tmp/junifer/tmpl0r3ryp0/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_18727068-ca99-11f0-a076-ebd5e38fbbd35_42k834/parcellation_warped.nii.gz is a prefix
Singularity args: --bind /tmp/junifer/tmpl0r3ryp0/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_18727068-ca99-11f0-a076-ebd5e38fbbd35_42k834:/data/mount_1 --bind /tmp/junifer/tmpl0r3ryp0/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_18727068-ca99-11f0-a076-ebd5e38fbbd35_42k834:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmpl0r3ryp0/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_18727068-ca99-11f0-a076-ebd5e38fbbd35_42k834:/data/mount_4
Corrected args for ANTS: antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz
Running command: /data/group/appliedml/tools/ants_2.5.0/singularity_cmd exec --cleanenv --bind /tmp/junifer/tmpl0r3ryp0/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_18727068-ca99-11f0-a076-ebd5e38fbbd35_42k834:/data/mount_1 --bind /tmp/junifer/tmpl0r3ryp0/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_18727068-ca99-11f0-a076-ebd5e38fbbd35_42k834:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmpl0r3ryp0/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_18727068-ca99-11f0-a076-ebd5e38fbbd35_42k834:/data/mount_4 /data/group/appliedml/tools/ants_2.5.0/ants_v2.5.0.sif antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz

2025-11-26 08:26:20,025 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp1bceczyh/test.sqlite (multiple output)>
2025-11-26 08:26:20,135 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2025-11-26 08:26:20,135 - JUNIFER - INFO - Computing VBM_GM
2025-11-26 08:26:20,135 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-11-26 08:26:20,135 - JUNIFER - INFO - Parcellation parameters:
2025-11-26 08:26:20,135 - JUNIFER - INFO -      resolution: None
2025-11-26 08:26:20,135 - JUNIFER - INFO -      n_rois: 1000
2025-11-26 08:26:20,135 - JUNIFER - INFO -      yeo_networks: 7
2025-11-26 08:26:20,135 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-11-26 08:26:20,267 - JUNIFER - INFO - Loading parcellation: /home/synchon/junifer_data/v2/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-11-26 08:26:22,177 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-11-26 08:26:23,282 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpl0r3ryp0/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_3453af90-ca99-11f0-a076-ebd5e38fbbd3j3wnnks9/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpl0r3ryp0/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_3453af90-ca99-11f0-a076-ebd5e38fbbd3j3wnnks9/MNI152Lin_T1w.nii.gz -t /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpl0r3ryp0/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_3453af90-ca99-11f0-a076-ebd5e38fbbd3j3wnnks9/parcellation_warped.nii.gz
2025-11-26 08:27:05,266 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
/tmp/junifer/tmpl0r3ryp0/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_3453af90-ca99-11f0-a076-ebd5e38fbbd3j3wnnks9/prewarp_parcellation.nii.gz is a file
/tmp/junifer/tmpl0r3ryp0/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_3453af90-ca99-11f0-a076-ebd5e38fbbd3j3wnnks9/MNI152Lin_T1w.nii.gz is a file
/home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 is a file
/tmp/junifer/tmpl0r3ryp0/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_3453af90-ca99-11f0-a076-ebd5e38fbbd3j3wnnks9/parcellation_warped.nii.gz is a prefix
Singularity args: --bind /tmp/junifer/tmpl0r3ryp0/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_3453af90-ca99-11f0-a076-ebd5e38fbbd3j3wnnks9:/data/mount_1 --bind /tmp/junifer/tmpl0r3ryp0/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_3453af90-ca99-11f0-a076-ebd5e38fbbd3j3wnnks9:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmpl0r3ryp0/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_3453af90-ca99-11f0-a076-ebd5e38fbbd3j3wnnks9:/data/mount_4
Corrected args for ANTS: antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz
Running command: /data/group/appliedml/tools/ants_2.5.0/singularity_cmd exec --cleanenv --bind /tmp/junifer/tmpl0r3ryp0/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_3453af90-ca99-11f0-a076-ebd5e38fbbd3j3wnnks9:/data/mount_1 --bind /tmp/junifer/tmpl0r3ryp0/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_3453af90-ca99-11f0-a076-ebd5e38fbbd3j3wnnks9:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmpl0r3ryp0/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_3453af90-ca99-11f0-a076-ebd5e38fbbd3j3wnnks9:/data/mount_4 /data/group/appliedml/tools/ants_2.5.0/ants_v2.5.0.sif antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz

2025-11-26 08:27:06,607 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp1bceczyh/test.sqlite (multiple output)>
2025-11-26 08:27:06,718 - JUNIFER - INFO - Marker collection fitting done
2025-11-26 08:27:06,719 - JUNIFER - INFO - Getting element sub-05
2025-11-26 08:27:06,719 - JUNIFER - INFO - Fitting pipeline
2025-11-26 08:27:06,719 - JUNIFER - INFO - Reading VBM_GM from /home/synchon/nilearn_data/oasis1/OAS1_0005_MR1/mwrc1OAS1_0005_MR1_mpr_anon_fslswapdim_bet.nii.gz
2025-11-26 08:27:06,719 - JUNIFER - INFO - VBM_GM is of type NIFTI
2025-11-26 08:27:06,726 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2025-11-26 08:27:06,726 - JUNIFER - INFO - Computing VBM_GM
2025-11-26 08:27:06,726 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-11-26 08:27:06,726 - JUNIFER - INFO - Parcellation parameters:
2025-11-26 08:27:06,726 - JUNIFER - INFO -      resolution: None
2025-11-26 08:27:06,726 - JUNIFER - INFO -      n_rois: 1000
2025-11-26 08:27:06,726 - JUNIFER - INFO -      yeo_networks: 7
2025-11-26 08:27:06,726 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-11-26 08:27:06,935 - JUNIFER - INFO - Loading parcellation: /home/synchon/junifer_data/v2/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-11-26 08:27:08,850 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-11-26 08:27:09,952 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpl05kfos3/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_5024c66e-ca99-11f0-a076-ebd5e38fbbd33_odgsxl/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpl05kfos3/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_5024c66e-ca99-11f0-a076-ebd5e38fbbd33_odgsxl/MNI152Lin_T1w.nii.gz -t /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpl05kfos3/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_5024c66e-ca99-11f0-a076-ebd5e38fbbd33_odgsxl/parcellation_warped.nii.gz
2025-11-26 08:27:52,248 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
/tmp/junifer/tmpl05kfos3/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_5024c66e-ca99-11f0-a076-ebd5e38fbbd33_odgsxl/prewarp_parcellation.nii.gz is a file
/tmp/junifer/tmpl05kfos3/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_5024c66e-ca99-11f0-a076-ebd5e38fbbd33_odgsxl/MNI152Lin_T1w.nii.gz is a file
/home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 is a file
/tmp/junifer/tmpl05kfos3/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_5024c66e-ca99-11f0-a076-ebd5e38fbbd33_odgsxl/parcellation_warped.nii.gz is a prefix
Singularity args: --bind /tmp/junifer/tmpl05kfos3/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_5024c66e-ca99-11f0-a076-ebd5e38fbbd33_odgsxl:/data/mount_1 --bind /tmp/junifer/tmpl05kfos3/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_5024c66e-ca99-11f0-a076-ebd5e38fbbd33_odgsxl:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmpl05kfos3/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_5024c66e-ca99-11f0-a076-ebd5e38fbbd33_odgsxl:/data/mount_4
Corrected args for ANTS: antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz
Running command: /data/group/appliedml/tools/ants_2.5.0/singularity_cmd exec --cleanenv --bind /tmp/junifer/tmpl05kfos3/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_5024c66e-ca99-11f0-a076-ebd5e38fbbd33_odgsxl:/data/mount_1 --bind /tmp/junifer/tmpl05kfos3/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_5024c66e-ca99-11f0-a076-ebd5e38fbbd33_odgsxl:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmpl05kfos3/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_5024c66e-ca99-11f0-a076-ebd5e38fbbd33_odgsxl:/data/mount_4 /data/group/appliedml/tools/ants_2.5.0/ants_v2.5.0.sif antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz

2025-11-26 08:27:53,585 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp1bceczyh/test.sqlite (multiple output)>
2025-11-26 08:27:53,687 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2025-11-26 08:27:53,687 - JUNIFER - INFO - Computing VBM_GM
2025-11-26 08:27:53,687 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-11-26 08:27:53,687 - JUNIFER - INFO - Parcellation parameters:
2025-11-26 08:27:53,687 - JUNIFER - INFO -      resolution: None
2025-11-26 08:27:53,687 - JUNIFER - INFO -      n_rois: 1000
2025-11-26 08:27:53,687 - JUNIFER - INFO -      yeo_networks: 7
2025-11-26 08:27:53,687 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-11-26 08:27:53,827 - JUNIFER - INFO - Loading parcellation: /home/synchon/junifer_data/v2/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-11-26 08:27:55,743 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-11-26 08:27:56,846 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpl05kfos3/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_6c17e824-ca99-11f0-a076-ebd5e38fbbd3zpyrlpck/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpl05kfos3/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_6c17e824-ca99-11f0-a076-ebd5e38fbbd3zpyrlpck/MNI152Lin_T1w.nii.gz -t /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpl05kfos3/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_6c17e824-ca99-11f0-a076-ebd5e38fbbd3zpyrlpck/parcellation_warped.nii.gz
2025-11-26 08:28:39,176 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
/tmp/junifer/tmpl05kfos3/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_6c17e824-ca99-11f0-a076-ebd5e38fbbd3zpyrlpck/prewarp_parcellation.nii.gz is a file
/tmp/junifer/tmpl05kfos3/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_6c17e824-ca99-11f0-a076-ebd5e38fbbd3zpyrlpck/MNI152Lin_T1w.nii.gz is a file
/home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 is a file
/tmp/junifer/tmpl05kfos3/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_6c17e824-ca99-11f0-a076-ebd5e38fbbd3zpyrlpck/parcellation_warped.nii.gz is a prefix
Singularity args: --bind /tmp/junifer/tmpl05kfos3/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_6c17e824-ca99-11f0-a076-ebd5e38fbbd3zpyrlpck:/data/mount_1 --bind /tmp/junifer/tmpl05kfos3/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_6c17e824-ca99-11f0-a076-ebd5e38fbbd3zpyrlpck:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmpl05kfos3/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_6c17e824-ca99-11f0-a076-ebd5e38fbbd3zpyrlpck:/data/mount_4
Corrected args for ANTS: antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz
Running command: /data/group/appliedml/tools/ants_2.5.0/singularity_cmd exec --cleanenv --bind /tmp/junifer/tmpl05kfos3/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_6c17e824-ca99-11f0-a076-ebd5e38fbbd3zpyrlpck:/data/mount_1 --bind /tmp/junifer/tmpl05kfos3/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_6c17e824-ca99-11f0-a076-ebd5e38fbbd3zpyrlpck:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmpl05kfos3/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_6c17e824-ca99-11f0-a076-ebd5e38fbbd3zpyrlpck:/data/mount_4 /data/group/appliedml/tools/ants_2.5.0/ants_v2.5.0.sif antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz

2025-11-26 08:28:40,656 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp1bceczyh/test.sqlite (multiple output)>
2025-11-26 08:28:40,763 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2025-11-26 08:28:40,763 - JUNIFER - INFO - Computing VBM_GM
2025-11-26 08:28:40,763 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-11-26 08:28:40,763 - JUNIFER - INFO - Parcellation parameters:
2025-11-26 08:28:40,763 - JUNIFER - INFO -      resolution: None
2025-11-26 08:28:40,763 - JUNIFER - INFO -      n_rois: 1000
2025-11-26 08:28:40,763 - JUNIFER - INFO -      yeo_networks: 7
2025-11-26 08:28:40,763 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-11-26 08:28:40,967 - JUNIFER - INFO - Loading parcellation: /home/synchon/junifer_data/v2/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-11-26 08:28:42,902 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-11-26 08:28:44,007 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpl05kfos3/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_88312b56-ca99-11f0-a076-ebd5e38fbbd3hcv452aj/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpl05kfos3/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_88312b56-ca99-11f0-a076-ebd5e38fbbd3hcv452aj/MNI152Lin_T1w.nii.gz -t /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpl05kfos3/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_88312b56-ca99-11f0-a076-ebd5e38fbbd3hcv452aj/parcellation_warped.nii.gz
2025-11-26 08:29:26,288 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
/tmp/junifer/tmpl05kfos3/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_88312b56-ca99-11f0-a076-ebd5e38fbbd3hcv452aj/prewarp_parcellation.nii.gz is a file
/tmp/junifer/tmpl05kfos3/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_88312b56-ca99-11f0-a076-ebd5e38fbbd3hcv452aj/MNI152Lin_T1w.nii.gz is a file
/home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 is a file
/tmp/junifer/tmpl05kfos3/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_88312b56-ca99-11f0-a076-ebd5e38fbbd3hcv452aj/parcellation_warped.nii.gz is a prefix
Singularity args: --bind /tmp/junifer/tmpl05kfos3/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_88312b56-ca99-11f0-a076-ebd5e38fbbd3hcv452aj:/data/mount_1 --bind /tmp/junifer/tmpl05kfos3/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_88312b56-ca99-11f0-a076-ebd5e38fbbd3hcv452aj:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmpl05kfos3/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_88312b56-ca99-11f0-a076-ebd5e38fbbd3hcv452aj:/data/mount_4
Corrected args for ANTS: antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz
Running command: /data/group/appliedml/tools/ants_2.5.0/singularity_cmd exec --cleanenv --bind /tmp/junifer/tmpl05kfos3/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_88312b56-ca99-11f0-a076-ebd5e38fbbd3hcv452aj:/data/mount_1 --bind /tmp/junifer/tmpl05kfos3/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_88312b56-ca99-11f0-a076-ebd5e38fbbd3hcv452aj:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmpl05kfos3/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_88312b56-ca99-11f0-a076-ebd5e38fbbd3hcv452aj:/data/mount_4 /data/group/appliedml/tools/ants_2.5.0/ants_v2.5.0.sif antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz

2025-11-26 08:29:27,638 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp1bceczyh/test.sqlite (multiple output)>
2025-11-26 08:29:27,763 - JUNIFER - INFO - Marker collection fitting done
2025-11-26 08:29:27,765 - JUNIFER - INFO - Getting element sub-06
2025-11-26 08:29:27,765 - JUNIFER - INFO - Fitting pipeline
2025-11-26 08:29:27,765 - JUNIFER - INFO - Reading VBM_GM from /home/synchon/nilearn_data/oasis1/OAS1_0006_MR1/mwrc1OAS1_0006_MR1_mpr_anon_fslswapdim_bet.nii.gz
2025-11-26 08:29:27,765 - JUNIFER - INFO - VBM_GM is of type NIFTI
2025-11-26 08:29:27,772 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2025-11-26 08:29:27,772 - JUNIFER - INFO - Computing VBM_GM
2025-11-26 08:29:27,772 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-11-26 08:29:27,772 - JUNIFER - INFO - Parcellation parameters:
2025-11-26 08:29:27,772 - JUNIFER - INFO -      resolution: None
2025-11-26 08:29:27,772 - JUNIFER - INFO -      n_rois: 1000
2025-11-26 08:29:27,772 - JUNIFER - INFO -      yeo_networks: 7
2025-11-26 08:29:27,772 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-11-26 08:29:27,900 - JUNIFER - INFO - Loading parcellation: /home/synchon/junifer_data/v2/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-11-26 08:29:29,880 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-11-26 08:29:30,990 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpds185xj7/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a42cd5a8-ca99-11f0-a076-ebd5e38fbbd3y777q6qj/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpds185xj7/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a42cd5a8-ca99-11f0-a076-ebd5e38fbbd3y777q6qj/MNI152Lin_T1w.nii.gz -t /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpds185xj7/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a42cd5a8-ca99-11f0-a076-ebd5e38fbbd3y777q6qj/parcellation_warped.nii.gz
2025-11-26 08:30:13,230 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
/tmp/junifer/tmpds185xj7/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a42cd5a8-ca99-11f0-a076-ebd5e38fbbd3y777q6qj/prewarp_parcellation.nii.gz is a file
/tmp/junifer/tmpds185xj7/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a42cd5a8-ca99-11f0-a076-ebd5e38fbbd3y777q6qj/MNI152Lin_T1w.nii.gz is a file
/home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 is a file
/tmp/junifer/tmpds185xj7/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a42cd5a8-ca99-11f0-a076-ebd5e38fbbd3y777q6qj/parcellation_warped.nii.gz is a prefix
Singularity args: --bind /tmp/junifer/tmpds185xj7/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a42cd5a8-ca99-11f0-a076-ebd5e38fbbd3y777q6qj:/data/mount_1 --bind /tmp/junifer/tmpds185xj7/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a42cd5a8-ca99-11f0-a076-ebd5e38fbbd3y777q6qj:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmpds185xj7/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a42cd5a8-ca99-11f0-a076-ebd5e38fbbd3y777q6qj:/data/mount_4
Corrected args for ANTS: antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz
Running command: /data/group/appliedml/tools/ants_2.5.0/singularity_cmd exec --cleanenv --bind /tmp/junifer/tmpds185xj7/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a42cd5a8-ca99-11f0-a076-ebd5e38fbbd3y777q6qj:/data/mount_1 --bind /tmp/junifer/tmpds185xj7/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a42cd5a8-ca99-11f0-a076-ebd5e38fbbd3y777q6qj:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmpds185xj7/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a42cd5a8-ca99-11f0-a076-ebd5e38fbbd3y777q6qj:/data/mount_4 /data/group/appliedml/tools/ants_2.5.0/ants_v2.5.0.sif antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz

2025-11-26 08:30:14,573 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp1bceczyh/test.sqlite (multiple output)>
2025-11-26 08:30:14,676 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2025-11-26 08:30:14,676 - JUNIFER - INFO - Computing VBM_GM
2025-11-26 08:30:14,676 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-11-26 08:30:14,676 - JUNIFER - INFO - Parcellation parameters:
2025-11-26 08:30:14,676 - JUNIFER - INFO -      resolution: None
2025-11-26 08:30:14,676 - JUNIFER - INFO -      n_rois: 1000
2025-11-26 08:30:14,676 - JUNIFER - INFO -      yeo_networks: 7
2025-11-26 08:30:14,676 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-11-26 08:30:14,871 - JUNIFER - INFO - Loading parcellation: /home/synchon/junifer_data/v2/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-11-26 08:30:16,806 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-11-26 08:30:17,910 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpds185xj7/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_c029534e-ca99-11f0-a076-ebd5e38fbbd3gxbm3tg7/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpds185xj7/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_c029534e-ca99-11f0-a076-ebd5e38fbbd3gxbm3tg7/MNI152Lin_T1w.nii.gz -t /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpds185xj7/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_c029534e-ca99-11f0-a076-ebd5e38fbbd3gxbm3tg7/parcellation_warped.nii.gz
2025-11-26 08:31:00,192 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
/tmp/junifer/tmpds185xj7/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_c029534e-ca99-11f0-a076-ebd5e38fbbd3gxbm3tg7/prewarp_parcellation.nii.gz is a file
/tmp/junifer/tmpds185xj7/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_c029534e-ca99-11f0-a076-ebd5e38fbbd3gxbm3tg7/MNI152Lin_T1w.nii.gz is a file
/home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 is a file
/tmp/junifer/tmpds185xj7/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_c029534e-ca99-11f0-a076-ebd5e38fbbd3gxbm3tg7/parcellation_warped.nii.gz is a prefix
Singularity args: --bind /tmp/junifer/tmpds185xj7/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_c029534e-ca99-11f0-a076-ebd5e38fbbd3gxbm3tg7:/data/mount_1 --bind /tmp/junifer/tmpds185xj7/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_c029534e-ca99-11f0-a076-ebd5e38fbbd3gxbm3tg7:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmpds185xj7/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_c029534e-ca99-11f0-a076-ebd5e38fbbd3gxbm3tg7:/data/mount_4
Corrected args for ANTS: antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz
Running command: /data/group/appliedml/tools/ants_2.5.0/singularity_cmd exec --cleanenv --bind /tmp/junifer/tmpds185xj7/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_c029534e-ca99-11f0-a076-ebd5e38fbbd3gxbm3tg7:/data/mount_1 --bind /tmp/junifer/tmpds185xj7/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_c029534e-ca99-11f0-a076-ebd5e38fbbd3gxbm3tg7:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmpds185xj7/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_c029534e-ca99-11f0-a076-ebd5e38fbbd3gxbm3tg7:/data/mount_4 /data/group/appliedml/tools/ants_2.5.0/ants_v2.5.0.sif antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz

2025-11-26 08:31:01,518 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp1bceczyh/test.sqlite (multiple output)>
2025-11-26 08:31:01,628 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2025-11-26 08:31:01,629 - JUNIFER - INFO - Computing VBM_GM
2025-11-26 08:31:01,629 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-11-26 08:31:01,629 - JUNIFER - INFO - Parcellation parameters:
2025-11-26 08:31:01,629 - JUNIFER - INFO -      resolution: None
2025-11-26 08:31:01,629 - JUNIFER - INFO -      n_rois: 1000
2025-11-26 08:31:01,629 - JUNIFER - INFO -      yeo_networks: 7
2025-11-26 08:31:01,629 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-11-26 08:31:01,773 - JUNIFER - INFO - Loading parcellation: /home/synchon/junifer_data/v2/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-11-26 08:31:03,743 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-11-26 08:31:04,849 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpds185xj7/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_dc1e41e0-ca99-11f0-a076-ebd5e38fbbd3kw_0i2j0/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpds185xj7/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_dc1e41e0-ca99-11f0-a076-ebd5e38fbbd3kw_0i2j0/MNI152Lin_T1w.nii.gz -t /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpds185xj7/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_dc1e41e0-ca99-11f0-a076-ebd5e38fbbd3kw_0i2j0/parcellation_warped.nii.gz
2025-11-26 08:31:46,951 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
/tmp/junifer/tmpds185xj7/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_dc1e41e0-ca99-11f0-a076-ebd5e38fbbd3kw_0i2j0/prewarp_parcellation.nii.gz is a file
/tmp/junifer/tmpds185xj7/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_dc1e41e0-ca99-11f0-a076-ebd5e38fbbd3kw_0i2j0/MNI152Lin_T1w.nii.gz is a file
/home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 is a file
/tmp/junifer/tmpds185xj7/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_dc1e41e0-ca99-11f0-a076-ebd5e38fbbd3kw_0i2j0/parcellation_warped.nii.gz is a prefix
Singularity args: --bind /tmp/junifer/tmpds185xj7/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_dc1e41e0-ca99-11f0-a076-ebd5e38fbbd3kw_0i2j0:/data/mount_1 --bind /tmp/junifer/tmpds185xj7/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_dc1e41e0-ca99-11f0-a076-ebd5e38fbbd3kw_0i2j0:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmpds185xj7/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_dc1e41e0-ca99-11f0-a076-ebd5e38fbbd3kw_0i2j0:/data/mount_4
Corrected args for ANTS: antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz
Running command: /data/group/appliedml/tools/ants_2.5.0/singularity_cmd exec --cleanenv --bind /tmp/junifer/tmpds185xj7/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_dc1e41e0-ca99-11f0-a076-ebd5e38fbbd3kw_0i2j0:/data/mount_1 --bind /tmp/junifer/tmpds185xj7/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_dc1e41e0-ca99-11f0-a076-ebd5e38fbbd3kw_0i2j0:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmpds185xj7/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_dc1e41e0-ca99-11f0-a076-ebd5e38fbbd3kw_0i2j0:/data/mount_4 /data/group/appliedml/tools/ants_2.5.0/ants_v2.5.0.sif antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz

2025-11-26 08:31:48,290 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp1bceczyh/test.sqlite (multiple output)>
2025-11-26 08:31:48,403 - JUNIFER - INFO - Marker collection fitting done
2025-11-26 08:31:48,405 - JUNIFER - INFO - Getting element sub-07
2025-11-26 08:31:48,405 - JUNIFER - INFO - Fitting pipeline
2025-11-26 08:31:48,405 - JUNIFER - INFO - Reading VBM_GM from /home/synchon/nilearn_data/oasis1/OAS1_0007_MR1/mwrc1OAS1_0007_MR1_mpr_anon_fslswapdim_bet.nii.gz
2025-11-26 08:31:48,405 - JUNIFER - INFO - VBM_GM is of type NIFTI
2025-11-26 08:31:48,412 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2025-11-26 08:31:48,412 - JUNIFER - INFO - Computing VBM_GM
2025-11-26 08:31:48,412 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-11-26 08:31:48,412 - JUNIFER - INFO - Parcellation parameters:
2025-11-26 08:31:48,412 - JUNIFER - INFO -      resolution: None
2025-11-26 08:31:48,412 - JUNIFER - INFO -      n_rois: 1000
2025-11-26 08:31:48,412 - JUNIFER - INFO -      yeo_networks: 7
2025-11-26 08:31:48,412 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-11-26 08:31:48,603 - JUNIFER - INFO - Loading parcellation: /home/synchon/junifer_data/v2/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-11-26 08:31:50,524 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-11-26 08:31:51,626 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpanqflm4i/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_f807c066-ca99-11f0-a076-ebd5e38fbbd3v_bcju4v/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpanqflm4i/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_f807c066-ca99-11f0-a076-ebd5e38fbbd3v_bcju4v/MNI152Lin_T1w.nii.gz -t /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpanqflm4i/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_f807c066-ca99-11f0-a076-ebd5e38fbbd3v_bcju4v/parcellation_warped.nii.gz
2025-11-26 08:32:33,950 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
/tmp/junifer/tmpanqflm4i/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_f807c066-ca99-11f0-a076-ebd5e38fbbd3v_bcju4v/prewarp_parcellation.nii.gz is a file
/tmp/junifer/tmpanqflm4i/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_f807c066-ca99-11f0-a076-ebd5e38fbbd3v_bcju4v/MNI152Lin_T1w.nii.gz is a file
/home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 is a file
/tmp/junifer/tmpanqflm4i/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_f807c066-ca99-11f0-a076-ebd5e38fbbd3v_bcju4v/parcellation_warped.nii.gz is a prefix
Singularity args: --bind /tmp/junifer/tmpanqflm4i/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_f807c066-ca99-11f0-a076-ebd5e38fbbd3v_bcju4v:/data/mount_1 --bind /tmp/junifer/tmpanqflm4i/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_f807c066-ca99-11f0-a076-ebd5e38fbbd3v_bcju4v:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmpanqflm4i/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_f807c066-ca99-11f0-a076-ebd5e38fbbd3v_bcju4v:/data/mount_4
Corrected args for ANTS: antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz
Running command: /data/group/appliedml/tools/ants_2.5.0/singularity_cmd exec --cleanenv --bind /tmp/junifer/tmpanqflm4i/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_f807c066-ca99-11f0-a076-ebd5e38fbbd3v_bcju4v:/data/mount_1 --bind /tmp/junifer/tmpanqflm4i/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_f807c066-ca99-11f0-a076-ebd5e38fbbd3v_bcju4v:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmpanqflm4i/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_f807c066-ca99-11f0-a076-ebd5e38fbbd3v_bcju4v:/data/mount_4 /data/group/appliedml/tools/ants_2.5.0/ants_v2.5.0.sif antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz

2025-11-26 08:32:35,354 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp1bceczyh/test.sqlite (multiple output)>
2025-11-26 08:32:35,456 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2025-11-26 08:32:35,456 - JUNIFER - INFO - Computing VBM_GM
2025-11-26 08:32:35,457 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-11-26 08:32:35,457 - JUNIFER - INFO - Parcellation parameters:
2025-11-26 08:32:35,457 - JUNIFER - INFO -      resolution: None
2025-11-26 08:32:35,457 - JUNIFER - INFO -      n_rois: 1000
2025-11-26 08:32:35,457 - JUNIFER - INFO -      yeo_networks: 7
2025-11-26 08:32:35,457 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-11-26 08:32:35,601 - JUNIFER - INFO - Loading parcellation: /home/synchon/junifer_data/v2/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-11-26 08:32:37,531 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-11-26 08:32:38,634 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpanqflm4i/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_140b34dc-ca9a-11f0-a076-ebd5e38fbbd3zmwhuojw/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpanqflm4i/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_140b34dc-ca9a-11f0-a076-ebd5e38fbbd3zmwhuojw/MNI152Lin_T1w.nii.gz -t /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpanqflm4i/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_140b34dc-ca9a-11f0-a076-ebd5e38fbbd3zmwhuojw/parcellation_warped.nii.gz
2025-11-26 08:33:21,162 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
/tmp/junifer/tmpanqflm4i/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_140b34dc-ca9a-11f0-a076-ebd5e38fbbd3zmwhuojw/prewarp_parcellation.nii.gz is a file
/tmp/junifer/tmpanqflm4i/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_140b34dc-ca9a-11f0-a076-ebd5e38fbbd3zmwhuojw/MNI152Lin_T1w.nii.gz is a file
/home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 is a file
/tmp/junifer/tmpanqflm4i/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_140b34dc-ca9a-11f0-a076-ebd5e38fbbd3zmwhuojw/parcellation_warped.nii.gz is a prefix
Singularity args: --bind /tmp/junifer/tmpanqflm4i/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_140b34dc-ca9a-11f0-a076-ebd5e38fbbd3zmwhuojw:/data/mount_1 --bind /tmp/junifer/tmpanqflm4i/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_140b34dc-ca9a-11f0-a076-ebd5e38fbbd3zmwhuojw:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmpanqflm4i/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_140b34dc-ca9a-11f0-a076-ebd5e38fbbd3zmwhuojw:/data/mount_4
Corrected args for ANTS: antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz
Running command: /data/group/appliedml/tools/ants_2.5.0/singularity_cmd exec --cleanenv --bind /tmp/junifer/tmpanqflm4i/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_140b34dc-ca9a-11f0-a076-ebd5e38fbbd3zmwhuojw:/data/mount_1 --bind /tmp/junifer/tmpanqflm4i/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_140b34dc-ca9a-11f0-a076-ebd5e38fbbd3zmwhuojw:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmpanqflm4i/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_140b34dc-ca9a-11f0-a076-ebd5e38fbbd3zmwhuojw:/data/mount_4 /data/group/appliedml/tools/ants_2.5.0/ants_v2.5.0.sif antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz

2025-11-26 08:33:22,507 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp1bceczyh/test.sqlite (multiple output)>
2025-11-26 08:33:22,616 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2025-11-26 08:33:22,616 - JUNIFER - INFO - Computing VBM_GM
2025-11-26 08:33:22,616 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-11-26 08:33:22,616 - JUNIFER - INFO - Parcellation parameters:
2025-11-26 08:33:22,616 - JUNIFER - INFO -      resolution: None
2025-11-26 08:33:22,616 - JUNIFER - INFO -      n_rois: 1000
2025-11-26 08:33:22,616 - JUNIFER - INFO -      yeo_networks: 7
2025-11-26 08:33:22,616 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-11-26 08:33:22,842 - JUNIFER - INFO - Loading parcellation: /home/synchon/junifer_data/v2/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-11-26 08:33:24,798 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-11-26 08:33:25,903 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpanqflm4i/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_3033d056-ca9a-11f0-a076-ebd5e38fbbd3axt1avsj/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpanqflm4i/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_3033d056-ca9a-11f0-a076-ebd5e38fbbd3axt1avsj/MNI152Lin_T1w.nii.gz -t /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpanqflm4i/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_3033d056-ca9a-11f0-a076-ebd5e38fbbd3axt1avsj/parcellation_warped.nii.gz
2025-11-26 08:34:07,934 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
/tmp/junifer/tmpanqflm4i/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_3033d056-ca9a-11f0-a076-ebd5e38fbbd3axt1avsj/prewarp_parcellation.nii.gz is a file
/tmp/junifer/tmpanqflm4i/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_3033d056-ca9a-11f0-a076-ebd5e38fbbd3axt1avsj/MNI152Lin_T1w.nii.gz is a file
/home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 is a file
/tmp/junifer/tmpanqflm4i/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_3033d056-ca9a-11f0-a076-ebd5e38fbbd3axt1avsj/parcellation_warped.nii.gz is a prefix
Singularity args: --bind /tmp/junifer/tmpanqflm4i/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_3033d056-ca9a-11f0-a076-ebd5e38fbbd3axt1avsj:/data/mount_1 --bind /tmp/junifer/tmpanqflm4i/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_3033d056-ca9a-11f0-a076-ebd5e38fbbd3axt1avsj:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmpanqflm4i/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_3033d056-ca9a-11f0-a076-ebd5e38fbbd3axt1avsj:/data/mount_4
Corrected args for ANTS: antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz
Running command: /data/group/appliedml/tools/ants_2.5.0/singularity_cmd exec --cleanenv --bind /tmp/junifer/tmpanqflm4i/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_3033d056-ca9a-11f0-a076-ebd5e38fbbd3axt1avsj:/data/mount_1 --bind /tmp/junifer/tmpanqflm4i/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_3033d056-ca9a-11f0-a076-ebd5e38fbbd3axt1avsj:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmpanqflm4i/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_3033d056-ca9a-11f0-a076-ebd5e38fbbd3axt1avsj:/data/mount_4 /data/group/appliedml/tools/ants_2.5.0/ants_v2.5.0.sif antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz

2025-11-26 08:34:09,287 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp1bceczyh/test.sqlite (multiple output)>
2025-11-26 08:34:09,401 - JUNIFER - INFO - Marker collection fitting done
2025-11-26 08:34:09,403 - JUNIFER - INFO - Getting element sub-08
2025-11-26 08:34:09,403 - JUNIFER - INFO - Fitting pipeline
2025-11-26 08:34:09,403 - JUNIFER - INFO - Reading VBM_GM from /home/synchon/nilearn_data/oasis1/OAS1_0009_MR1/mwrc1OAS1_0009_MR1_mpr_anon_fslswapdim_bet.nii.gz
2025-11-26 08:34:09,403 - JUNIFER - INFO - VBM_GM is of type NIFTI
2025-11-26 08:34:09,410 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2025-11-26 08:34:09,410 - JUNIFER - INFO - Computing VBM_GM
2025-11-26 08:34:09,410 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-11-26 08:34:09,410 - JUNIFER - INFO - Parcellation parameters:
2025-11-26 08:34:09,410 - JUNIFER - INFO -      resolution: None
2025-11-26 08:34:09,410 - JUNIFER - INFO -      n_rois: 1000
2025-11-26 08:34:09,410 - JUNIFER - INFO -      yeo_networks: 7
2025-11-26 08:34:09,410 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-11-26 08:34:09,545 - JUNIFER - INFO - Loading parcellation: /home/synchon/junifer_data/v2/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-11-26 08:34:11,494 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-11-26 08:34:12,600 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp00ryygjp/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_4c0cc31e-ca9a-11f0-a076-ebd5e38fbbd3ypx1dzde/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp00ryygjp/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_4c0cc31e-ca9a-11f0-a076-ebd5e38fbbd3ypx1dzde/MNI152Lin_T1w.nii.gz -t /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmp00ryygjp/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_4c0cc31e-ca9a-11f0-a076-ebd5e38fbbd3ypx1dzde/parcellation_warped.nii.gz
2025-11-26 08:34:56,403 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
/tmp/junifer/tmp00ryygjp/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_4c0cc31e-ca9a-11f0-a076-ebd5e38fbbd3ypx1dzde/prewarp_parcellation.nii.gz is a file
/tmp/junifer/tmp00ryygjp/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_4c0cc31e-ca9a-11f0-a076-ebd5e38fbbd3ypx1dzde/MNI152Lin_T1w.nii.gz is a file
/home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 is a file
/tmp/junifer/tmp00ryygjp/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_4c0cc31e-ca9a-11f0-a076-ebd5e38fbbd3ypx1dzde/parcellation_warped.nii.gz is a prefix
Singularity args: --bind /tmp/junifer/tmp00ryygjp/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_4c0cc31e-ca9a-11f0-a076-ebd5e38fbbd3ypx1dzde:/data/mount_1 --bind /tmp/junifer/tmp00ryygjp/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_4c0cc31e-ca9a-11f0-a076-ebd5e38fbbd3ypx1dzde:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmp00ryygjp/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_4c0cc31e-ca9a-11f0-a076-ebd5e38fbbd3ypx1dzde:/data/mount_4
Corrected args for ANTS: antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz
Running command: /data/group/appliedml/tools/ants_2.5.0/singularity_cmd exec --cleanenv --bind /tmp/junifer/tmp00ryygjp/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_4c0cc31e-ca9a-11f0-a076-ebd5e38fbbd3ypx1dzde:/data/mount_1 --bind /tmp/junifer/tmp00ryygjp/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_4c0cc31e-ca9a-11f0-a076-ebd5e38fbbd3ypx1dzde:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmp00ryygjp/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_4c0cc31e-ca9a-11f0-a076-ebd5e38fbbd3ypx1dzde:/data/mount_4 /data/group/appliedml/tools/ants_2.5.0/ants_v2.5.0.sif antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz

2025-11-26 08:34:57,747 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp1bceczyh/test.sqlite (multiple output)>
2025-11-26 08:34:57,846 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2025-11-26 08:34:57,847 - JUNIFER - INFO - Computing VBM_GM
2025-11-26 08:34:57,847 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-11-26 08:34:57,847 - JUNIFER - INFO - Parcellation parameters:
2025-11-26 08:34:57,847 - JUNIFER - INFO -      resolution: None
2025-11-26 08:34:57,847 - JUNIFER - INFO -      n_rois: 1000
2025-11-26 08:34:57,847 - JUNIFER - INFO -      yeo_networks: 7
2025-11-26 08:34:57,847 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-11-26 08:34:58,057 - JUNIFER - INFO - Loading parcellation: /home/synchon/junifer_data/v2/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-11-26 08:34:59,980 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-11-26 08:35:01,088 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp00ryygjp/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_68f413ec-ca9a-11f0-a076-ebd5e38fbbd3zg82vcas/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp00ryygjp/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_68f413ec-ca9a-11f0-a076-ebd5e38fbbd3zg82vcas/MNI152Lin_T1w.nii.gz -t /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmp00ryygjp/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_68f413ec-ca9a-11f0-a076-ebd5e38fbbd3zg82vcas/parcellation_warped.nii.gz
2025-11-26 08:35:43,962 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
/tmp/junifer/tmp00ryygjp/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_68f413ec-ca9a-11f0-a076-ebd5e38fbbd3zg82vcas/prewarp_parcellation.nii.gz is a file
/tmp/junifer/tmp00ryygjp/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_68f413ec-ca9a-11f0-a076-ebd5e38fbbd3zg82vcas/MNI152Lin_T1w.nii.gz is a file
/home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 is a file
/tmp/junifer/tmp00ryygjp/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_68f413ec-ca9a-11f0-a076-ebd5e38fbbd3zg82vcas/parcellation_warped.nii.gz is a prefix
Singularity args: --bind /tmp/junifer/tmp00ryygjp/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_68f413ec-ca9a-11f0-a076-ebd5e38fbbd3zg82vcas:/data/mount_1 --bind /tmp/junifer/tmp00ryygjp/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_68f413ec-ca9a-11f0-a076-ebd5e38fbbd3zg82vcas:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmp00ryygjp/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_68f413ec-ca9a-11f0-a076-ebd5e38fbbd3zg82vcas:/data/mount_4
Corrected args for ANTS: antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz
Running command: /data/group/appliedml/tools/ants_2.5.0/singularity_cmd exec --cleanenv --bind /tmp/junifer/tmp00ryygjp/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_68f413ec-ca9a-11f0-a076-ebd5e38fbbd3zg82vcas:/data/mount_1 --bind /tmp/junifer/tmp00ryygjp/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_68f413ec-ca9a-11f0-a076-ebd5e38fbbd3zg82vcas:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmp00ryygjp/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_68f413ec-ca9a-11f0-a076-ebd5e38fbbd3zg82vcas:/data/mount_4 /data/group/appliedml/tools/ants_2.5.0/ants_v2.5.0.sif antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz

2025-11-26 08:35:45,310 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp1bceczyh/test.sqlite (multiple output)>
2025-11-26 08:35:45,421 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2025-11-26 08:35:45,421 - JUNIFER - INFO - Computing VBM_GM
2025-11-26 08:35:45,421 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-11-26 08:35:45,421 - JUNIFER - INFO - Parcellation parameters:
2025-11-26 08:35:45,421 - JUNIFER - INFO -      resolution: None
2025-11-26 08:35:45,421 - JUNIFER - INFO -      n_rois: 1000
2025-11-26 08:35:45,421 - JUNIFER - INFO -      yeo_networks: 7
2025-11-26 08:35:45,421 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-11-26 08:35:45,551 - JUNIFER - INFO - Loading parcellation: /home/synchon/junifer_data/v2/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-11-26 08:35:47,516 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-11-26 08:35:48,617 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp00ryygjp/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_8545914c-ca9a-11f0-a076-ebd5e38fbbd3smk5avwt/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp00ryygjp/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_8545914c-ca9a-11f0-a076-ebd5e38fbbd3smk5avwt/MNI152Lin_T1w.nii.gz -t /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmp00ryygjp/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_8545914c-ca9a-11f0-a076-ebd5e38fbbd3smk5avwt/parcellation_warped.nii.gz
2025-11-26 08:36:31,120 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
/tmp/junifer/tmp00ryygjp/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_8545914c-ca9a-11f0-a076-ebd5e38fbbd3smk5avwt/prewarp_parcellation.nii.gz is a file
/tmp/junifer/tmp00ryygjp/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_8545914c-ca9a-11f0-a076-ebd5e38fbbd3smk5avwt/MNI152Lin_T1w.nii.gz is a file
/home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 is a file
/tmp/junifer/tmp00ryygjp/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_8545914c-ca9a-11f0-a076-ebd5e38fbbd3smk5avwt/parcellation_warped.nii.gz is a prefix
Singularity args: --bind /tmp/junifer/tmp00ryygjp/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_8545914c-ca9a-11f0-a076-ebd5e38fbbd3smk5avwt:/data/mount_1 --bind /tmp/junifer/tmp00ryygjp/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_8545914c-ca9a-11f0-a076-ebd5e38fbbd3smk5avwt:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmp00ryygjp/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_8545914c-ca9a-11f0-a076-ebd5e38fbbd3smk5avwt:/data/mount_4
Corrected args for ANTS: antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz
Running command: /data/group/appliedml/tools/ants_2.5.0/singularity_cmd exec --cleanenv --bind /tmp/junifer/tmp00ryygjp/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_8545914c-ca9a-11f0-a076-ebd5e38fbbd3smk5avwt:/data/mount_1 --bind /tmp/junifer/tmp00ryygjp/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_8545914c-ca9a-11f0-a076-ebd5e38fbbd3smk5avwt:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmp00ryygjp/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_8545914c-ca9a-11f0-a076-ebd5e38fbbd3smk5avwt:/data/mount_4 /data/group/appliedml/tools/ants_2.5.0/ants_v2.5.0.sif antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz

2025-11-26 08:36:32,462 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp1bceczyh/test.sqlite (multiple output)>
2025-11-26 08:36:32,574 - JUNIFER - INFO - Marker collection fitting done
2025-11-26 08:36:32,575 - JUNIFER - INFO - Getting element sub-09
2025-11-26 08:36:32,575 - JUNIFER - INFO - Fitting pipeline
2025-11-26 08:36:32,575 - JUNIFER - INFO - Reading VBM_GM from /home/synchon/nilearn_data/oasis1/OAS1_0010_MR1/mwrc1OAS1_0010_MR1_mpr_anon_fslswapdim_bet.nii.gz
2025-11-26 08:36:32,575 - JUNIFER - INFO - VBM_GM is of type NIFTI
2025-11-26 08:36:32,582 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2025-11-26 08:36:32,582 - JUNIFER - INFO - Computing VBM_GM
2025-11-26 08:36:32,582 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-11-26 08:36:32,582 - JUNIFER - INFO - Parcellation parameters:
2025-11-26 08:36:32,582 - JUNIFER - INFO -      resolution: None
2025-11-26 08:36:32,582 - JUNIFER - INFO -      n_rois: 1000
2025-11-26 08:36:32,582 - JUNIFER - INFO -      yeo_networks: 7
2025-11-26 08:36:32,582 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-11-26 08:36:32,795 - JUNIFER - INFO - Loading parcellation: /home/synchon/junifer_data/v2/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-11-26 08:36:34,727 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-11-26 08:36:35,831 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmptmj8yim4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a16c49e2-ca9a-11f0-a076-ebd5e38fbbd3idvxkq9c/prewarp_parcellation.nii.gz -r /tmp/junifer/tmptmj8yim4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a16c49e2-ca9a-11f0-a076-ebd5e38fbbd3idvxkq9c/MNI152Lin_T1w.nii.gz -t /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmptmj8yim4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a16c49e2-ca9a-11f0-a076-ebd5e38fbbd3idvxkq9c/parcellation_warped.nii.gz
2025-11-26 08:37:18,429 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
/tmp/junifer/tmptmj8yim4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a16c49e2-ca9a-11f0-a076-ebd5e38fbbd3idvxkq9c/prewarp_parcellation.nii.gz is a file
/tmp/junifer/tmptmj8yim4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a16c49e2-ca9a-11f0-a076-ebd5e38fbbd3idvxkq9c/MNI152Lin_T1w.nii.gz is a file
/home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 is a file
/tmp/junifer/tmptmj8yim4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a16c49e2-ca9a-11f0-a076-ebd5e38fbbd3idvxkq9c/parcellation_warped.nii.gz is a prefix
Singularity args: --bind /tmp/junifer/tmptmj8yim4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a16c49e2-ca9a-11f0-a076-ebd5e38fbbd3idvxkq9c:/data/mount_1 --bind /tmp/junifer/tmptmj8yim4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a16c49e2-ca9a-11f0-a076-ebd5e38fbbd3idvxkq9c:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmptmj8yim4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a16c49e2-ca9a-11f0-a076-ebd5e38fbbd3idvxkq9c:/data/mount_4
Corrected args for ANTS: antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz
Running command: /data/group/appliedml/tools/ants_2.5.0/singularity_cmd exec --cleanenv --bind /tmp/junifer/tmptmj8yim4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a16c49e2-ca9a-11f0-a076-ebd5e38fbbd3idvxkq9c:/data/mount_1 --bind /tmp/junifer/tmptmj8yim4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a16c49e2-ca9a-11f0-a076-ebd5e38fbbd3idvxkq9c:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmptmj8yim4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a16c49e2-ca9a-11f0-a076-ebd5e38fbbd3idvxkq9c:/data/mount_4 /data/group/appliedml/tools/ants_2.5.0/ants_v2.5.0.sif antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz

2025-11-26 08:37:19,810 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp1bceczyh/test.sqlite (multiple output)>
2025-11-26 08:37:19,912 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2025-11-26 08:37:19,913 - JUNIFER - INFO - Computing VBM_GM
2025-11-26 08:37:19,913 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-11-26 08:37:19,913 - JUNIFER - INFO - Parcellation parameters:
2025-11-26 08:37:19,913 - JUNIFER - INFO -      resolution: None
2025-11-26 08:37:19,913 - JUNIFER - INFO -      n_rois: 1000
2025-11-26 08:37:19,913 - JUNIFER - INFO -      yeo_networks: 7
2025-11-26 08:37:19,913 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-11-26 08:37:20,038 - JUNIFER - INFO - Loading parcellation: /home/synchon/junifer_data/v2/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-11-26 08:37:21,963 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-11-26 08:37:23,064 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmptmj8yim4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_bd9491ec-ca9a-11f0-a076-ebd5e38fbbd3hd2rrx52/prewarp_parcellation.nii.gz -r /tmp/junifer/tmptmj8yim4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_bd9491ec-ca9a-11f0-a076-ebd5e38fbbd3hd2rrx52/MNI152Lin_T1w.nii.gz -t /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmptmj8yim4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_bd9491ec-ca9a-11f0-a076-ebd5e38fbbd3hd2rrx52/parcellation_warped.nii.gz
2025-11-26 08:38:05,497 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
/tmp/junifer/tmptmj8yim4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_bd9491ec-ca9a-11f0-a076-ebd5e38fbbd3hd2rrx52/prewarp_parcellation.nii.gz is a file
/tmp/junifer/tmptmj8yim4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_bd9491ec-ca9a-11f0-a076-ebd5e38fbbd3hd2rrx52/MNI152Lin_T1w.nii.gz is a file
/home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 is a file
/tmp/junifer/tmptmj8yim4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_bd9491ec-ca9a-11f0-a076-ebd5e38fbbd3hd2rrx52/parcellation_warped.nii.gz is a prefix
Singularity args: --bind /tmp/junifer/tmptmj8yim4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_bd9491ec-ca9a-11f0-a076-ebd5e38fbbd3hd2rrx52:/data/mount_1 --bind /tmp/junifer/tmptmj8yim4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_bd9491ec-ca9a-11f0-a076-ebd5e38fbbd3hd2rrx52:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmptmj8yim4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_bd9491ec-ca9a-11f0-a076-ebd5e38fbbd3hd2rrx52:/data/mount_4
Corrected args for ANTS: antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz
Running command: /data/group/appliedml/tools/ants_2.5.0/singularity_cmd exec --cleanenv --bind /tmp/junifer/tmptmj8yim4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_bd9491ec-ca9a-11f0-a076-ebd5e38fbbd3hd2rrx52:/data/mount_1 --bind /tmp/junifer/tmptmj8yim4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_bd9491ec-ca9a-11f0-a076-ebd5e38fbbd3hd2rrx52:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmptmj8yim4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_bd9491ec-ca9a-11f0-a076-ebd5e38fbbd3hd2rrx52:/data/mount_4 /data/group/appliedml/tools/ants_2.5.0/ants_v2.5.0.sif antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz

2025-11-26 08:38:06,847 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp1bceczyh/test.sqlite (multiple output)>
2025-11-26 08:38:06,955 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2025-11-26 08:38:06,955 - JUNIFER - INFO - Computing VBM_GM
2025-11-26 08:38:06,955 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-11-26 08:38:06,955 - JUNIFER - INFO - Parcellation parameters:
2025-11-26 08:38:06,955 - JUNIFER - INFO -      resolution: None
2025-11-26 08:38:06,955 - JUNIFER - INFO -      n_rois: 1000
2025-11-26 08:38:06,955 - JUNIFER - INFO -      yeo_networks: 7
2025-11-26 08:38:06,955 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-11-26 08:38:07,191 - JUNIFER - INFO - Loading parcellation: /home/synchon/junifer_data/v2/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-11-26 08:38:09,117 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-11-26 08:38:10,220 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmptmj8yim4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_d9afa754-ca9a-11f0-a076-ebd5e38fbbd3o50dl3mi/prewarp_parcellation.nii.gz -r /tmp/junifer/tmptmj8yim4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_d9afa754-ca9a-11f0-a076-ebd5e38fbbd3o50dl3mi/MNI152Lin_T1w.nii.gz -t /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmptmj8yim4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_d9afa754-ca9a-11f0-a076-ebd5e38fbbd3o50dl3mi/parcellation_warped.nii.gz
2025-11-26 08:38:52,123 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
/tmp/junifer/tmptmj8yim4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_d9afa754-ca9a-11f0-a076-ebd5e38fbbd3o50dl3mi/prewarp_parcellation.nii.gz is a file
/tmp/junifer/tmptmj8yim4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_d9afa754-ca9a-11f0-a076-ebd5e38fbbd3o50dl3mi/MNI152Lin_T1w.nii.gz is a file
/home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 is a file
/tmp/junifer/tmptmj8yim4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_d9afa754-ca9a-11f0-a076-ebd5e38fbbd3o50dl3mi/parcellation_warped.nii.gz is a prefix
Singularity args: --bind /tmp/junifer/tmptmj8yim4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_d9afa754-ca9a-11f0-a076-ebd5e38fbbd3o50dl3mi:/data/mount_1 --bind /tmp/junifer/tmptmj8yim4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_d9afa754-ca9a-11f0-a076-ebd5e38fbbd3o50dl3mi:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmptmj8yim4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_d9afa754-ca9a-11f0-a076-ebd5e38fbbd3o50dl3mi:/data/mount_4
Corrected args for ANTS: antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz
Running command: /data/group/appliedml/tools/ants_2.5.0/singularity_cmd exec --cleanenv --bind /tmp/junifer/tmptmj8yim4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_d9afa754-ca9a-11f0-a076-ebd5e38fbbd3o50dl3mi:/data/mount_1 --bind /tmp/junifer/tmptmj8yim4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_d9afa754-ca9a-11f0-a076-ebd5e38fbbd3o50dl3mi:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmptmj8yim4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_d9afa754-ca9a-11f0-a076-ebd5e38fbbd3o50dl3mi:/data/mount_4 /data/group/appliedml/tools/ants_2.5.0/ants_v2.5.0.sif antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz

2025-11-26 08:38:53,473 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp1bceczyh/test.sqlite (multiple output)>
2025-11-26 08:38:53,587 - JUNIFER - INFO - Marker collection fitting done
2025-11-26 08:38:53,589 - JUNIFER - INFO - Getting element sub-10
2025-11-26 08:38:53,589 - JUNIFER - INFO - Fitting pipeline
2025-11-26 08:38:53,589 - JUNIFER - INFO - Reading VBM_GM from /home/synchon/nilearn_data/oasis1/OAS1_0011_MR1/mwrc1OAS1_0011_MR1_mpr_anon_fslswapdim_bet.nii.gz
2025-11-26 08:38:53,589 - JUNIFER - INFO - VBM_GM is of type NIFTI
2025-11-26 08:38:53,596 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2025-11-26 08:38:53,596 - JUNIFER - INFO - Computing VBM_GM
2025-11-26 08:38:53,596 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-11-26 08:38:53,596 - JUNIFER - INFO - Parcellation parameters:
2025-11-26 08:38:53,596 - JUNIFER - INFO -      resolution: None
2025-11-26 08:38:53,596 - JUNIFER - INFO -      n_rois: 1000
2025-11-26 08:38:53,596 - JUNIFER - INFO -      yeo_networks: 7
2025-11-26 08:38:53,596 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-11-26 08:38:53,722 - JUNIFER - INFO - Loading parcellation: /home/synchon/junifer_data/v2/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-11-26 08:38:55,646 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-11-26 08:38:56,753 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp0x_5g672/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_f56c0c76-ca9a-11f0-a076-ebd5e38fbbd3y20iuj8x/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp0x_5g672/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_f56c0c76-ca9a-11f0-a076-ebd5e38fbbd3y20iuj8x/MNI152Lin_T1w.nii.gz -t /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmp0x_5g672/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_f56c0c76-ca9a-11f0-a076-ebd5e38fbbd3y20iuj8x/parcellation_warped.nii.gz
2025-11-26 08:39:39,220 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
/tmp/junifer/tmp0x_5g672/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_f56c0c76-ca9a-11f0-a076-ebd5e38fbbd3y20iuj8x/prewarp_parcellation.nii.gz is a file
/tmp/junifer/tmp0x_5g672/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_f56c0c76-ca9a-11f0-a076-ebd5e38fbbd3y20iuj8x/MNI152Lin_T1w.nii.gz is a file
/home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 is a file
/tmp/junifer/tmp0x_5g672/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_f56c0c76-ca9a-11f0-a076-ebd5e38fbbd3y20iuj8x/parcellation_warped.nii.gz is a prefix
Singularity args: --bind /tmp/junifer/tmp0x_5g672/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_f56c0c76-ca9a-11f0-a076-ebd5e38fbbd3y20iuj8x:/data/mount_1 --bind /tmp/junifer/tmp0x_5g672/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_f56c0c76-ca9a-11f0-a076-ebd5e38fbbd3y20iuj8x:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmp0x_5g672/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_f56c0c76-ca9a-11f0-a076-ebd5e38fbbd3y20iuj8x:/data/mount_4
Corrected args for ANTS: antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz
Running command: /data/group/appliedml/tools/ants_2.5.0/singularity_cmd exec --cleanenv --bind /tmp/junifer/tmp0x_5g672/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_f56c0c76-ca9a-11f0-a076-ebd5e38fbbd3y20iuj8x:/data/mount_1 --bind /tmp/junifer/tmp0x_5g672/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_f56c0c76-ca9a-11f0-a076-ebd5e38fbbd3y20iuj8x:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmp0x_5g672/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_f56c0c76-ca9a-11f0-a076-ebd5e38fbbd3y20iuj8x:/data/mount_4 /data/group/appliedml/tools/ants_2.5.0/ants_v2.5.0.sif antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz

2025-11-26 08:39:40,567 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp1bceczyh/test.sqlite (multiple output)>
2025-11-26 08:39:40,667 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2025-11-26 08:39:40,667 - JUNIFER - INFO - Computing VBM_GM
2025-11-26 08:39:40,667 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-11-26 08:39:40,667 - JUNIFER - INFO - Parcellation parameters:
2025-11-26 08:39:40,667 - JUNIFER - INFO -      resolution: None
2025-11-26 08:39:40,667 - JUNIFER - INFO -      n_rois: 1000
2025-11-26 08:39:40,667 - JUNIFER - INFO -      yeo_networks: 7
2025-11-26 08:39:40,667 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-11-26 08:39:40,872 - JUNIFER - INFO - Loading parcellation: /home/synchon/junifer_data/v2/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-11-26 08:39:42,795 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-11-26 08:39:43,895 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp0x_5g672/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_118648e0-ca9b-11f0-a076-ebd5e38fbbd31yt1tdr6/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp0x_5g672/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_118648e0-ca9b-11f0-a076-ebd5e38fbbd31yt1tdr6/MNI152Lin_T1w.nii.gz -t /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmp0x_5g672/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_118648e0-ca9b-11f0-a076-ebd5e38fbbd31yt1tdr6/parcellation_warped.nii.gz
2025-11-26 08:40:26,209 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
/tmp/junifer/tmp0x_5g672/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_118648e0-ca9b-11f0-a076-ebd5e38fbbd31yt1tdr6/prewarp_parcellation.nii.gz is a file
/tmp/junifer/tmp0x_5g672/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_118648e0-ca9b-11f0-a076-ebd5e38fbbd31yt1tdr6/MNI152Lin_T1w.nii.gz is a file
/home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 is a file
/tmp/junifer/tmp0x_5g672/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_118648e0-ca9b-11f0-a076-ebd5e38fbbd31yt1tdr6/parcellation_warped.nii.gz is a prefix
Singularity args: --bind /tmp/junifer/tmp0x_5g672/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_118648e0-ca9b-11f0-a076-ebd5e38fbbd31yt1tdr6:/data/mount_1 --bind /tmp/junifer/tmp0x_5g672/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_118648e0-ca9b-11f0-a076-ebd5e38fbbd31yt1tdr6:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmp0x_5g672/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_118648e0-ca9b-11f0-a076-ebd5e38fbbd31yt1tdr6:/data/mount_4
Corrected args for ANTS: antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz
Running command: /data/group/appliedml/tools/ants_2.5.0/singularity_cmd exec --cleanenv --bind /tmp/junifer/tmp0x_5g672/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_118648e0-ca9b-11f0-a076-ebd5e38fbbd31yt1tdr6:/data/mount_1 --bind /tmp/junifer/tmp0x_5g672/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_118648e0-ca9b-11f0-a076-ebd5e38fbbd31yt1tdr6:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmp0x_5g672/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_118648e0-ca9b-11f0-a076-ebd5e38fbbd31yt1tdr6:/data/mount_4 /data/group/appliedml/tools/ants_2.5.0/ants_v2.5.0.sif antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz

2025-11-26 08:40:27,529 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp1bceczyh/test.sqlite (multiple output)>
2025-11-26 08:40:27,638 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2025-11-26 08:40:27,638 - JUNIFER - INFO - Computing VBM_GM
2025-11-26 08:40:27,638 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-11-26 08:40:27,638 - JUNIFER - INFO - Parcellation parameters:
2025-11-26 08:40:27,638 - JUNIFER - INFO -      resolution: None
2025-11-26 08:40:27,638 - JUNIFER - INFO -      n_rois: 1000
2025-11-26 08:40:27,638 - JUNIFER - INFO -      yeo_networks: 7
2025-11-26 08:40:27,638 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-11-26 08:40:27,768 - JUNIFER - INFO - Loading parcellation: /home/synchon/junifer_data/v2/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-11-26 08:40:29,684 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-11-26 08:40:30,794 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp0x_5g672/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_2d7a03b6-ca9b-11f0-a076-ebd5e38fbbd3ku_xuzfx/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp0x_5g672/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_2d7a03b6-ca9b-11f0-a076-ebd5e38fbbd3ku_xuzfx/MNI152Lin_T1w.nii.gz -t /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmp0x_5g672/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_2d7a03b6-ca9b-11f0-a076-ebd5e38fbbd3ku_xuzfx/parcellation_warped.nii.gz
2025-11-26 08:41:13,067 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
/tmp/junifer/tmp0x_5g672/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_2d7a03b6-ca9b-11f0-a076-ebd5e38fbbd3ku_xuzfx/prewarp_parcellation.nii.gz is a file
/tmp/junifer/tmp0x_5g672/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_2d7a03b6-ca9b-11f0-a076-ebd5e38fbbd3ku_xuzfx/MNI152Lin_T1w.nii.gz is a file
/home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 is a file
/tmp/junifer/tmp0x_5g672/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_2d7a03b6-ca9b-11f0-a076-ebd5e38fbbd3ku_xuzfx/parcellation_warped.nii.gz is a prefix
Singularity args: --bind /tmp/junifer/tmp0x_5g672/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_2d7a03b6-ca9b-11f0-a076-ebd5e38fbbd3ku_xuzfx:/data/mount_1 --bind /tmp/junifer/tmp0x_5g672/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_2d7a03b6-ca9b-11f0-a076-ebd5e38fbbd3ku_xuzfx:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmp0x_5g672/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_2d7a03b6-ca9b-11f0-a076-ebd5e38fbbd3ku_xuzfx:/data/mount_4
Corrected args for ANTS: antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz
Running command: /data/group/appliedml/tools/ants_2.5.0/singularity_cmd exec --cleanenv --bind /tmp/junifer/tmp0x_5g672/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_2d7a03b6-ca9b-11f0-a076-ebd5e38fbbd3ku_xuzfx:/data/mount_1 --bind /tmp/junifer/tmp0x_5g672/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_2d7a03b6-ca9b-11f0-a076-ebd5e38fbbd3ku_xuzfx:/data/mount_2 --bind /home/synchon/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5:/data/mount_3 --bind /tmp/junifer/tmp0x_5g672/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_2d7a03b6-ca9b-11f0-a076-ebd5e38fbbd3ku_xuzfx:/data/mount_4 /data/group/appliedml/tools/ants_2.5.0/ants_v2.5.0.sif antsApplyTransforms -d 3 -e 3 -n GenericLabel[NearestNeighbor] -i /data/mount_1/prewarp_parcellation.nii.gz -r /data/mount_2/MNI152Lin_T1w.nii.gz -t /data/mount_3/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /data/mount_4/parcellation_warped.nii.gz

2025-11-26 08:41:14,396 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp1bceczyh/test.sqlite (multiple output)>
2025-11-26 08:41:14,509 - JUNIFER - INFO - Marker collection fitting done

import tempfile

import junifer.testing.registry  # noqa: F401
from junifer.api import run


datagrabber = {
    "kind": "OasisVBMTestingDataGrabber",
}

markers = [
    {
        "name": "Schaefer1000x7_TrimMean80",
        "kind": "ParcelAggregation",
        "parcellation": "Schaefer1000x7",
        "method": "trim_mean",
        "method_params": {"proportiontocut": 0.2},
    },
    {
        "name": "Schaefer1000x7_Mean",
        "kind": "ParcelAggregation",
        "parcellation": "Schaefer1000x7",
        "method": "mean",
    },
    {
        "name": "Schaefer1000x7_Std",
        "kind": "ParcelAggregation",
        "parcellation": "Schaefer1000x7",
        "method": "std",
    },
]

storage = {
    "kind": "SQLiteFeatureStorage",
}

with tempfile.TemporaryDirectory() as tmpdir:
    uri = f"{tmpdir}/test.sqlite"
    storage["uri"] = uri
    run(
        workdir="/tmp",
        datagrabber=datagrabber,
        markers=markers,
        storage=storage,
    )