.. DO NOT EDIT. .. THIS FILE WAS AUTOMATICALLY GENERATED BY SPHINX-GALLERY. .. TO MAKE CHANGES, EDIT THE SOURCE PYTHON FILE: .. "auto_examples/run_run_gmd_mean.py" .. LINE NUMBERS ARE GIVEN BELOW. .. only:: html .. note:: :class: sphx-glr-download-link-note :ref:`Go to the end ` to download the full example code. .. rst-class:: sphx-glr-example-title .. _sphx_glr_auto_examples_run_run_gmd_mean.py: UKB VBM GMD Extraction ====================== Authors: Federico Raimondo License: BSD 3 clause .. GENERATED FROM PYTHON SOURCE LINES 9-54 .. rst-class:: sphx-glr-script-out .. code-block:: none 2024-08-14 13:18:48,302 - JUNIFER - INFO - Registering OasisVBMTestingDataGrabber in datagrabber 2024-08-14 13:18:48,302 - JUNIFER - INFO - Registering SPMAuditoryTestingDataGrabber in datagrabber 2024-08-14 13:18:48,302 - JUNIFER - INFO - Registering PartlyCloudyTestingDataGrabber in datagrabber 2024-08-14 13:18:48,302 - JUNIFER - INFO - Validating Marker Collection 2024-08-14 13:18:48,302 - JUNIFER - INFO - DataGrabber output type: ['VBM_GM'] 2024-08-14 13:18:48,302 - JUNIFER - INFO - Validating Data Reader: 2024-08-14 13:18:48,303 - JUNIFER - INFO - Data Reader output type: ['VBM_GM'] 2024-08-14 13:18:48,303 - JUNIFER - INFO - Validating Marker: Schaefer1000x7_TrimMean80 2024-08-14 13:18:48,303 - JUNIFER - INFO - Marker output type: ['vector'] 2024-08-14 13:18:48,303 - JUNIFER - INFO - Validating storage for Schaefer1000x7_TrimMean80 2024-08-14 13:18:48,303 - JUNIFER - INFO - Validating Marker: Schaefer1000x7_Mean 2024-08-14 13:18:48,303 - JUNIFER - INFO - Marker output type: ['vector'] 2024-08-14 13:18:48,303 - JUNIFER - INFO - Validating storage for Schaefer1000x7_Mean 2024-08-14 13:18:48,303 - JUNIFER - INFO - Validating Marker: Schaefer1000x7_Std 2024-08-14 13:18:48,303 - JUNIFER - INFO - Marker output type: ['vector'] 2024-08-14 13:18:48,303 - JUNIFER - INFO - Validating storage for Schaefer1000x7_Std Added README.md to /home/runner/nilearn_data Dataset created in /home/runner/nilearn_data/oasis1 Downloading data from https://www.nitrc.org/frs/download.php/6364/archive_dartel.tgz ... Downloaded 117686272 of 905208634 bytes (13.0%, 6.7s remaining) Downloaded 257056768 of 905208634 bytes (28.4%, 5.0s remaining) Downloaded 394362880 of 905208634 bytes (43.6%, 3.9s remaining) Downloaded 531914752 of 905208634 bytes (58.8%, 2.8s remaining) Downloaded 673939456 of 905208634 bytes (74.5%, 1.7s remaining) Downloaded 815955968 of 905208634 bytes (90.1%, 0.7s remaining) ...done. (7 seconds, 0 min) Extracting data from /home/runner/nilearn_data/oasis1/7088b0bf88f5650db26e32ec3afdd589/archive_dartel.tgz..... done. 2024-08-14 13:19:01,905 - JUNIFER - INFO - Getting element sub-01 2024-08-14 13:19:01,906 - JUNIFER - INFO - Fitting pipeline 2024-08-14 13:19:01,906 - JUNIFER - INFO - Reading VBM_GM from /home/runner/nilearn_data/oasis1/OAS1_0001_MR1/mwrc1OAS1_0001_MR1_mpr_anon_fslswapdim_bet.nii.gz 2024-08-14 13:19:01,906 - JUNIFER - INFO - VBM_GM is of type NIFTI 2024-08-14 13:19:01,907 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80 2024-08-14 13:19:01,907 - JUNIFER - INFO - Computing VBM_GM 2024-08-14 13:19:01,908 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2024-08-14 13:19:01,908 - JUNIFER - INFO - Parcellation parameters: 2024-08-14 13:19:01,908 - JUNIFER - INFO - resolution: 2.0 2024-08-14 13:19:01,908 - JUNIFER - INFO - n_rois: 1000 2024-08-14 13:19:01,908 - JUNIFER - INFO - yeo_networks: 7 2024-08-14 13:19:01,908 - JUNIFER - INFO - At least one of the parcellation files are missing. Fetching using nilearn. Added README.md to /home/runner/junifer/data/parcellations Dataset created in /home/runner/junifer/data/parcellations/schaefer_2018 Downloading data from https://raw.githubusercontent.com/ThomasYeoLab/CBIG/v0.14.3-Update_Yeo2011_Schaefer2018_labelname/stable_projects/brain_parcellation/Schaefer2018_LocalGlobal/Parcellations/MNI/Schaefer2018_1000Parcels_7Networks_order.txt ... ...done. (0 seconds, 0 min) Downloading data from https://raw.githubusercontent.com/ThomasYeoLab/CBIG/v0.14.3-Update_Yeo2011_Schaefer2018_labelname/stable_projects/brain_parcellation/Schaefer2018_LocalGlobal/Parcellations/MNI/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz ... ...done. (0 seconds, 0 min) 2024-08-14 13:19:01,937 - JUNIFER - INFO - Loading parcellation /home/runner/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz 2024-08-14 13:19:01,975 - JUNIFER - INFO - Downloading xfm file for MNI152NLin6Asym to MNI152Lin from https://gin.g-node.org/juaml/human-template-xfms/raw/main/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 2024-08-14 13:26:07,524 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2 Downloading https://templateflow.s3.amazonaws.com/tpl-MNI152Lin/tpl-MNI152Lin_res-02_T1w.nii.gz 0%| | 0.00/1.45M [00:00 2024-08-14 13:26:16,877 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean 2024-08-14 13:26:16,877 - JUNIFER - INFO - Computing VBM_GM 2024-08-14 13:26:16,877 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2024-08-14 13:26:16,877 - JUNIFER - INFO - Parcellation parameters: 2024-08-14 13:26:16,877 - JUNIFER - INFO - resolution: 2.0 2024-08-14 13:26:16,878 - JUNIFER - INFO - n_rois: 1000 2024-08-14 13:26:16,878 - JUNIFER - INFO - yeo_networks: 7 2024-08-14 13:26:16,880 - JUNIFER - INFO - Loading parcellation /home/runner/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz 2024-08-14 13:26:16,914 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 2024-08-14 13:26:17,956 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2 2024-08-14 13:26:18,056 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/tmpp3v3ecmt/parcellationsogkuvzxm/Schaefer1000x7.nii.gz -r /tmp/tmpp3v3ecmt/parcellationsogkuvzxm/MNI152Lin_T1w_2.0.nii.gz -t /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 -o /tmp/tmp47d6z4yz/parcellations1_nwiwhq/Schaefer1000x7_warped_from_MNI152NLin6Asym_to_MNI152Lin.nii.gz 2024-08-14 13:26:25,892 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2024-08-14 13:26:27,071 - JUNIFER - INFO - Storing in 2024-08-14 13:26:27,230 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std 2024-08-14 13:26:27,230 - JUNIFER - INFO - Computing VBM_GM 2024-08-14 13:26:27,230 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2024-08-14 13:26:27,230 - JUNIFER - INFO - Parcellation parameters: 2024-08-14 13:26:27,230 - JUNIFER - INFO - resolution: 2.0 2024-08-14 13:26:27,230 - JUNIFER - INFO - n_rois: 1000 2024-08-14 13:26:27,230 - JUNIFER - INFO - yeo_networks: 7 2024-08-14 13:26:27,232 - JUNIFER - INFO - Loading parcellation /home/runner/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz 2024-08-14 13:26:27,267 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 2024-08-14 13:26:28,311 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2 2024-08-14 13:26:28,410 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/tmpp3v3ecmt/parcellationsqrz34hep/Schaefer1000x7.nii.gz -r /tmp/tmpp3v3ecmt/parcellationsqrz34hep/MNI152Lin_T1w_2.0.nii.gz -t /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 -o /tmp/tmp47d6z4yz/parcellationszsedaok7/Schaefer1000x7_warped_from_MNI152NLin6Asym_to_MNI152Lin.nii.gz 2024-08-14 13:26:35,731 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2024-08-14 13:26:36,915 - JUNIFER - INFO - Storing in 2024-08-14 13:26:37,078 - JUNIFER - INFO - Marker collection fitting done 2024-08-14 13:26:37,079 - JUNIFER - INFO - Getting element sub-02 2024-08-14 13:26:37,079 - JUNIFER - INFO - Fitting pipeline 2024-08-14 13:26:37,079 - JUNIFER - INFO - Reading VBM_GM from /home/runner/nilearn_data/oasis1/OAS1_0002_MR1/mwrc1OAS1_0002_MR1_mpr_anon_fslswapdim_bet.nii.gz 2024-08-14 13:26:37,079 - JUNIFER - INFO - VBM_GM is of type NIFTI 2024-08-14 13:26:37,080 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80 2024-08-14 13:26:37,080 - JUNIFER - INFO - Computing VBM_GM 2024-08-14 13:26:37,081 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2024-08-14 13:26:37,081 - JUNIFER - INFO - Parcellation parameters: 2024-08-14 13:26:37,081 - JUNIFER - INFO - resolution: 2.0 2024-08-14 13:26:37,081 - JUNIFER - INFO - n_rois: 1000 2024-08-14 13:26:37,081 - JUNIFER - INFO - yeo_networks: 7 2024-08-14 13:26:37,083 - JUNIFER - INFO - Loading parcellation /home/runner/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz 2024-08-14 13:26:37,116 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 2024-08-14 13:26:38,183 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2 2024-08-14 13:26:38,282 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/tmpp3v3ecmt/parcellations86yi_2k7/Schaefer1000x7.nii.gz -r /tmp/tmpp3v3ecmt/parcellations86yi_2k7/MNI152Lin_T1w_2.0.nii.gz -t /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 -o /tmp/tmpr3_6gz3q/parcellationsiy96cj_g/Schaefer1000x7_warped_from_MNI152NLin6Asym_to_MNI152Lin.nii.gz 2024-08-14 13:26:45,735 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2024-08-14 13:26:46,895 - JUNIFER - INFO - Storing in 2024-08-14 13:26:47,048 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean 2024-08-14 13:26:47,048 - JUNIFER - INFO - Computing VBM_GM 2024-08-14 13:26:47,049 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2024-08-14 13:26:47,049 - JUNIFER - INFO - Parcellation parameters: 2024-08-14 13:26:47,049 - JUNIFER - INFO - resolution: 2.0 2024-08-14 13:26:47,049 - JUNIFER - INFO - n_rois: 1000 2024-08-14 13:26:47,049 - JUNIFER - INFO - yeo_networks: 7 2024-08-14 13:26:47,051 - JUNIFER - INFO - Loading parcellation /home/runner/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz 2024-08-14 13:26:47,084 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 2024-08-14 13:26:48,119 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2 2024-08-14 13:26:48,217 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/tmpp3v3ecmt/parcellations2zazoam9/Schaefer1000x7.nii.gz -r /tmp/tmpp3v3ecmt/parcellations2zazoam9/MNI152Lin_T1w_2.0.nii.gz -t /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 -o /tmp/tmpr3_6gz3q/parcellations1evwi1eq/Schaefer1000x7_warped_from_MNI152NLin6Asym_to_MNI152Lin.nii.gz 2024-08-14 13:26:55,612 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2024-08-14 13:26:56,777 - JUNIFER - INFO - Storing in 2024-08-14 13:26:56,939 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std 2024-08-14 13:26:56,939 - JUNIFER - INFO - Computing VBM_GM 2024-08-14 13:26:56,939 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2024-08-14 13:26:56,939 - JUNIFER - INFO - Parcellation parameters: 2024-08-14 13:26:56,939 - JUNIFER - INFO - resolution: 2.0 2024-08-14 13:26:56,940 - JUNIFER - INFO - n_rois: 1000 2024-08-14 13:26:56,940 - JUNIFER - INFO - yeo_networks: 7 2024-08-14 13:26:56,942 - JUNIFER - INFO - Loading parcellation /home/runner/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz 2024-08-14 13:26:56,974 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 2024-08-14 13:26:58,017 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2 2024-08-14 13:26:58,116 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/tmpp3v3ecmt/parcellationsg02yfvxp/Schaefer1000x7.nii.gz -r /tmp/tmpp3v3ecmt/parcellationsg02yfvxp/MNI152Lin_T1w_2.0.nii.gz -t /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 -o /tmp/tmpr3_6gz3q/parcellationsjnsnr9fv/Schaefer1000x7_warped_from_MNI152NLin6Asym_to_MNI152Lin.nii.gz 2024-08-14 13:27:05,498 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2024-08-14 13:27:06,639 - JUNIFER - INFO - Storing in 2024-08-14 13:27:06,797 - JUNIFER - INFO - Marker collection fitting done 2024-08-14 13:27:06,798 - JUNIFER - INFO - Getting element sub-03 2024-08-14 13:27:06,798 - JUNIFER - INFO - Fitting pipeline 2024-08-14 13:27:06,798 - JUNIFER - INFO - Reading VBM_GM from /home/runner/nilearn_data/oasis1/OAS1_0003_MR1/mwrc1OAS1_0003_MR1_mpr_anon_fslswapdim_bet.nii.gz 2024-08-14 13:27:06,798 - JUNIFER - INFO - VBM_GM is of type NIFTI 2024-08-14 13:27:06,799 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80 2024-08-14 13:27:06,799 - JUNIFER - INFO - Computing VBM_GM 2024-08-14 13:27:06,799 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2024-08-14 13:27:06,799 - JUNIFER - INFO - Parcellation parameters: 2024-08-14 13:27:06,800 - JUNIFER - INFO - resolution: 2.0 2024-08-14 13:27:06,800 - JUNIFER - INFO - n_rois: 1000 2024-08-14 13:27:06,800 - JUNIFER - INFO - yeo_networks: 7 2024-08-14 13:27:06,802 - JUNIFER - INFO - Loading parcellation /home/runner/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz 2024-08-14 13:27:06,833 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 2024-08-14 13:27:07,880 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2 2024-08-14 13:27:07,979 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/tmpp3v3ecmt/parcellations_sjv_yo1/Schaefer1000x7.nii.gz -r /tmp/tmpp3v3ecmt/parcellations_sjv_yo1/MNI152Lin_T1w_2.0.nii.gz -t /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 -o /tmp/tmpk508vb1z/parcellationsoxlfsz0p/Schaefer1000x7_warped_from_MNI152NLin6Asym_to_MNI152Lin.nii.gz 2024-08-14 13:27:15,323 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2024-08-14 13:27:16,549 - JUNIFER - INFO - Storing in 2024-08-14 13:27:16,701 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean 2024-08-14 13:27:16,701 - JUNIFER - INFO - Computing VBM_GM 2024-08-14 13:27:16,701 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2024-08-14 13:27:16,701 - JUNIFER - INFO - Parcellation parameters: 2024-08-14 13:27:16,701 - JUNIFER - INFO - resolution: 2.0 2024-08-14 13:27:16,702 - JUNIFER - INFO - n_rois: 1000 2024-08-14 13:27:16,702 - JUNIFER - INFO - yeo_networks: 7 2024-08-14 13:27:16,703 - JUNIFER - INFO - Loading parcellation /home/runner/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz 2024-08-14 13:27:16,736 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 2024-08-14 13:27:17,790 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2 2024-08-14 13:27:17,889 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/tmpp3v3ecmt/parcellations61tr04vj/Schaefer1000x7.nii.gz -r /tmp/tmpp3v3ecmt/parcellations61tr04vj/MNI152Lin_T1w_2.0.nii.gz -t /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 -o /tmp/tmpk508vb1z/parcellations_iau6isl/Schaefer1000x7_warped_from_MNI152NLin6Asym_to_MNI152Lin.nii.gz 2024-08-14 13:27:25,325 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2024-08-14 13:27:26,514 - JUNIFER - INFO - Storing in 2024-08-14 13:27:26,671 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std 2024-08-14 13:27:26,671 - JUNIFER - INFO - Computing VBM_GM 2024-08-14 13:27:26,671 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2024-08-14 13:27:26,671 - JUNIFER - INFO - Parcellation parameters: 2024-08-14 13:27:26,671 - JUNIFER - INFO - resolution: 2.0 2024-08-14 13:27:26,671 - JUNIFER - INFO - n_rois: 1000 2024-08-14 13:27:26,671 - JUNIFER - INFO - yeo_networks: 7 2024-08-14 13:27:26,673 - JUNIFER - INFO - Loading parcellation /home/runner/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz 2024-08-14 13:27:26,706 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 2024-08-14 13:27:27,751 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2 2024-08-14 13:27:27,850 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/tmpp3v3ecmt/parcellationssp6q8t8b/Schaefer1000x7.nii.gz -r /tmp/tmpp3v3ecmt/parcellationssp6q8t8b/MNI152Lin_T1w_2.0.nii.gz -t /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 -o /tmp/tmpk508vb1z/parcellationssvcem3tn/Schaefer1000x7_warped_from_MNI152NLin6Asym_to_MNI152Lin.nii.gz 2024-08-14 13:27:35,249 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2024-08-14 13:27:36,426 - JUNIFER - INFO - Storing in 2024-08-14 13:27:36,587 - JUNIFER - INFO - Marker collection fitting done 2024-08-14 13:27:36,588 - JUNIFER - INFO - Getting element sub-04 2024-08-14 13:27:36,588 - JUNIFER - INFO - Fitting pipeline 2024-08-14 13:27:36,588 - JUNIFER - INFO - Reading VBM_GM from /home/runner/nilearn_data/oasis1/OAS1_0004_MR1/mwrc1OAS1_0004_MR1_mpr_anon_fslswapdim_bet.nii.gz 2024-08-14 13:27:36,588 - JUNIFER - INFO - VBM_GM is of type NIFTI 2024-08-14 13:27:36,589 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80 2024-08-14 13:27:36,589 - JUNIFER - INFO - Computing VBM_GM 2024-08-14 13:27:36,589 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2024-08-14 13:27:36,590 - JUNIFER - INFO - Parcellation parameters: 2024-08-14 13:27:36,590 - JUNIFER - INFO - resolution: 2.0 2024-08-14 13:27:36,590 - JUNIFER - INFO - n_rois: 1000 2024-08-14 13:27:36,590 - JUNIFER - INFO - yeo_networks: 7 2024-08-14 13:27:36,592 - JUNIFER - INFO - Loading parcellation /home/runner/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz 2024-08-14 13:27:36,623 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 2024-08-14 13:27:37,660 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2 2024-08-14 13:27:37,758 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/tmpp3v3ecmt/parcellationsjuvjp0d6/Schaefer1000x7.nii.gz -r /tmp/tmpp3v3ecmt/parcellationsjuvjp0d6/MNI152Lin_T1w_2.0.nii.gz -t /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 -o /tmp/tmpnfb2ricw/parcellationss6ky4jr4/Schaefer1000x7_warped_from_MNI152NLin6Asym_to_MNI152Lin.nii.gz 2024-08-14 13:27:45,039 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2024-08-14 13:27:46,218 - JUNIFER - INFO - Storing in 2024-08-14 13:27:46,371 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean 2024-08-14 13:27:46,371 - JUNIFER - INFO - Computing VBM_GM 2024-08-14 13:27:46,372 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2024-08-14 13:27:46,372 - JUNIFER - INFO - Parcellation parameters: 2024-08-14 13:27:46,372 - JUNIFER - INFO - resolution: 2.0 2024-08-14 13:27:46,372 - JUNIFER - INFO - n_rois: 1000 2024-08-14 13:27:46,372 - JUNIFER - INFO - yeo_networks: 7 2024-08-14 13:27:46,374 - JUNIFER - INFO - Loading parcellation /home/runner/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz 2024-08-14 13:27:46,412 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 2024-08-14 13:27:47,450 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2 2024-08-14 13:27:47,549 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/tmpp3v3ecmt/parcellations2456l_2u/Schaefer1000x7.nii.gz -r /tmp/tmpp3v3ecmt/parcellations2456l_2u/MNI152Lin_T1w_2.0.nii.gz -t /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 -o /tmp/tmpnfb2ricw/parcellationsl66ba2j2/Schaefer1000x7_warped_from_MNI152NLin6Asym_to_MNI152Lin.nii.gz 2024-08-14 13:27:54,949 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2024-08-14 13:27:56,089 - JUNIFER - INFO - Storing in 2024-08-14 13:27:56,246 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std 2024-08-14 13:27:56,247 - JUNIFER - INFO - Computing VBM_GM 2024-08-14 13:27:56,247 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2024-08-14 13:27:56,247 - JUNIFER - INFO - Parcellation parameters: 2024-08-14 13:27:56,247 - JUNIFER - INFO - resolution: 2.0 2024-08-14 13:27:56,247 - JUNIFER - INFO - n_rois: 1000 2024-08-14 13:27:56,247 - JUNIFER - INFO - yeo_networks: 7 2024-08-14 13:27:56,249 - JUNIFER - INFO - Loading parcellation /home/runner/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz 2024-08-14 13:27:56,282 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 2024-08-14 13:27:57,320 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2 2024-08-14 13:27:57,419 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/tmpp3v3ecmt/parcellationsnjluxjwz/Schaefer1000x7.nii.gz -r /tmp/tmpp3v3ecmt/parcellationsnjluxjwz/MNI152Lin_T1w_2.0.nii.gz -t /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 -o /tmp/tmpnfb2ricw/parcellations8co8i226/Schaefer1000x7_warped_from_MNI152NLin6Asym_to_MNI152Lin.nii.gz 2024-08-14 13:28:04,842 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2024-08-14 13:28:06,002 - JUNIFER - INFO - Storing in 2024-08-14 13:28:06,162 - JUNIFER - INFO - Marker collection fitting done 2024-08-14 13:28:06,163 - JUNIFER - INFO - Getting element sub-05 2024-08-14 13:28:06,163 - JUNIFER - INFO - Fitting pipeline 2024-08-14 13:28:06,163 - JUNIFER - INFO - Reading VBM_GM from /home/runner/nilearn_data/oasis1/OAS1_0005_MR1/mwrc1OAS1_0005_MR1_mpr_anon_fslswapdim_bet.nii.gz 2024-08-14 13:28:06,163 - JUNIFER - INFO - VBM_GM is of type NIFTI 2024-08-14 13:28:06,164 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80 2024-08-14 13:28:06,164 - JUNIFER - INFO - Computing VBM_GM 2024-08-14 13:28:06,165 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2024-08-14 13:28:06,165 - JUNIFER - INFO - Parcellation parameters: 2024-08-14 13:28:06,165 - JUNIFER - INFO - resolution: 2.0 2024-08-14 13:28:06,165 - JUNIFER - INFO - n_rois: 1000 2024-08-14 13:28:06,165 - JUNIFER - INFO - yeo_networks: 7 2024-08-14 13:28:06,167 - JUNIFER - INFO - Loading parcellation /home/runner/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz 2024-08-14 13:28:06,198 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 2024-08-14 13:28:07,234 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2 2024-08-14 13:28:07,333 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/tmpp3v3ecmt/parcellationsgpb_yn1_/Schaefer1000x7.nii.gz -r /tmp/tmpp3v3ecmt/parcellationsgpb_yn1_/MNI152Lin_T1w_2.0.nii.gz -t /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 -o /tmp/tmpmtg7_p1b/parcellations22vgm5_2/Schaefer1000x7_warped_from_MNI152NLin6Asym_to_MNI152Lin.nii.gz 2024-08-14 13:28:14,676 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2024-08-14 13:28:15,839 - JUNIFER - INFO - Storing in 2024-08-14 13:28:15,995 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean 2024-08-14 13:28:15,996 - JUNIFER - INFO - Computing VBM_GM 2024-08-14 13:28:15,996 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2024-08-14 13:28:15,996 - JUNIFER - INFO - Parcellation parameters: 2024-08-14 13:28:15,996 - JUNIFER - INFO - resolution: 2.0 2024-08-14 13:28:15,996 - JUNIFER - INFO - n_rois: 1000 2024-08-14 13:28:15,996 - JUNIFER - INFO - yeo_networks: 7 2024-08-14 13:28:15,998 - JUNIFER - INFO - Loading parcellation /home/runner/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz 2024-08-14 13:28:16,031 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 2024-08-14 13:28:17,066 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2 2024-08-14 13:28:17,165 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/tmpp3v3ecmt/parcellationsde6ovxfg/Schaefer1000x7.nii.gz -r /tmp/tmpp3v3ecmt/parcellationsde6ovxfg/MNI152Lin_T1w_2.0.nii.gz -t /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 -o /tmp/tmpmtg7_p1b/parcellationsk42awlzj/Schaefer1000x7_warped_from_MNI152NLin6Asym_to_MNI152Lin.nii.gz 2024-08-14 13:28:24,571 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2024-08-14 13:28:25,720 - JUNIFER - INFO - Storing in 2024-08-14 13:28:25,874 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std 2024-08-14 13:28:25,874 - JUNIFER - INFO - Computing VBM_GM 2024-08-14 13:28:25,875 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2024-08-14 13:28:25,875 - JUNIFER - INFO - Parcellation parameters: 2024-08-14 13:28:25,875 - JUNIFER - INFO - resolution: 2.0 2024-08-14 13:28:25,875 - JUNIFER - INFO - n_rois: 1000 2024-08-14 13:28:25,875 - JUNIFER - INFO - yeo_networks: 7 2024-08-14 13:28:25,877 - JUNIFER - INFO - Loading parcellation /home/runner/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz 2024-08-14 13:28:25,909 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 2024-08-14 13:28:26,948 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2 2024-08-14 13:28:27,047 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/tmpp3v3ecmt/parcellationsyzilk280/Schaefer1000x7.nii.gz -r /tmp/tmpp3v3ecmt/parcellationsyzilk280/MNI152Lin_T1w_2.0.nii.gz -t /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 -o /tmp/tmpmtg7_p1b/parcellationsu7r3utqv/Schaefer1000x7_warped_from_MNI152NLin6Asym_to_MNI152Lin.nii.gz 2024-08-14 13:28:34,561 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2024-08-14 13:28:35,714 - JUNIFER - INFO - Storing in 2024-08-14 13:28:35,877 - JUNIFER - INFO - Marker collection fitting done 2024-08-14 13:28:35,878 - JUNIFER - INFO - Getting element sub-06 2024-08-14 13:28:35,878 - JUNIFER - INFO - Fitting pipeline 2024-08-14 13:28:35,878 - JUNIFER - INFO - Reading VBM_GM from /home/runner/nilearn_data/oasis1/OAS1_0006_MR1/mwrc1OAS1_0006_MR1_mpr_anon_fslswapdim_bet.nii.gz 2024-08-14 13:28:35,878 - JUNIFER - INFO - VBM_GM is of type NIFTI 2024-08-14 13:28:35,879 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80 2024-08-14 13:28:35,879 - JUNIFER - INFO - Computing VBM_GM 2024-08-14 13:28:35,880 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2024-08-14 13:28:35,880 - JUNIFER - INFO - Parcellation parameters: 2024-08-14 13:28:35,880 - JUNIFER - INFO - resolution: 2.0 2024-08-14 13:28:35,880 - JUNIFER - INFO - n_rois: 1000 2024-08-14 13:28:35,880 - JUNIFER - INFO - yeo_networks: 7 2024-08-14 13:28:35,882 - JUNIFER - INFO - Loading parcellation /home/runner/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz 2024-08-14 13:28:35,914 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 2024-08-14 13:28:36,947 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2 2024-08-14 13:28:37,046 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/tmpp3v3ecmt/parcellationsanre16ed/Schaefer1000x7.nii.gz -r /tmp/tmpp3v3ecmt/parcellationsanre16ed/MNI152Lin_T1w_2.0.nii.gz -t /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 -o /tmp/tmpv6uls2kq/parcellationsmguy8aho/Schaefer1000x7_warped_from_MNI152NLin6Asym_to_MNI152Lin.nii.gz 2024-08-14 13:28:44,414 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2024-08-14 13:28:45,582 - JUNIFER - INFO - Storing in 2024-08-14 13:28:45,736 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean 2024-08-14 13:28:45,737 - JUNIFER - INFO - Computing VBM_GM 2024-08-14 13:28:45,737 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2024-08-14 13:28:45,737 - JUNIFER - INFO - Parcellation parameters: 2024-08-14 13:28:45,737 - JUNIFER - INFO - resolution: 2.0 2024-08-14 13:28:45,737 - JUNIFER - INFO - n_rois: 1000 2024-08-14 13:28:45,737 - JUNIFER - INFO - yeo_networks: 7 2024-08-14 13:28:45,739 - JUNIFER - INFO - Loading parcellation /home/runner/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz 2024-08-14 13:28:45,772 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 2024-08-14 13:28:46,806 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2 2024-08-14 13:28:46,905 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/tmpp3v3ecmt/parcellationsg4ctg2kk/Schaefer1000x7.nii.gz -r /tmp/tmpp3v3ecmt/parcellationsg4ctg2kk/MNI152Lin_T1w_2.0.nii.gz -t /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 -o /tmp/tmpv6uls2kq/parcellationsrsuqhnih/Schaefer1000x7_warped_from_MNI152NLin6Asym_to_MNI152Lin.nii.gz 2024-08-14 13:28:54,197 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2024-08-14 13:28:55,382 - JUNIFER - INFO - Storing in 2024-08-14 13:28:55,541 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std 2024-08-14 13:28:55,541 - JUNIFER - INFO - Computing VBM_GM 2024-08-14 13:28:55,542 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2024-08-14 13:28:55,542 - JUNIFER - INFO - Parcellation parameters: 2024-08-14 13:28:55,542 - JUNIFER - INFO - resolution: 2.0 2024-08-14 13:28:55,542 - JUNIFER - INFO - n_rois: 1000 2024-08-14 13:28:55,542 - JUNIFER - INFO - yeo_networks: 7 2024-08-14 13:28:55,544 - JUNIFER - INFO - Loading parcellation /home/runner/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz 2024-08-14 13:28:55,577 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 2024-08-14 13:28:56,627 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2 2024-08-14 13:28:56,726 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/tmpp3v3ecmt/parcellationsry9gip5f/Schaefer1000x7.nii.gz -r /tmp/tmpp3v3ecmt/parcellationsry9gip5f/MNI152Lin_T1w_2.0.nii.gz -t /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 -o /tmp/tmpv6uls2kq/parcellationsxks86sy7/Schaefer1000x7_warped_from_MNI152NLin6Asym_to_MNI152Lin.nii.gz 2024-08-14 13:29:04,193 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2024-08-14 13:29:05,382 - JUNIFER - INFO - Storing in 2024-08-14 13:29:05,541 - JUNIFER - INFO - Marker collection fitting done 2024-08-14 13:29:05,541 - JUNIFER - INFO - Getting element sub-07 2024-08-14 13:29:05,542 - JUNIFER - INFO - Fitting pipeline 2024-08-14 13:29:05,542 - JUNIFER - INFO - Reading VBM_GM from /home/runner/nilearn_data/oasis1/OAS1_0007_MR1/mwrc1OAS1_0007_MR1_mpr_anon_fslswapdim_bet.nii.gz 2024-08-14 13:29:05,542 - JUNIFER - INFO - VBM_GM is of type NIFTI 2024-08-14 13:29:05,543 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80 2024-08-14 13:29:05,543 - JUNIFER - INFO - Computing VBM_GM 2024-08-14 13:29:05,543 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2024-08-14 13:29:05,543 - JUNIFER - INFO - Parcellation parameters: 2024-08-14 13:29:05,544 - JUNIFER - INFO - resolution: 2.0 2024-08-14 13:29:05,544 - JUNIFER - INFO - n_rois: 1000 2024-08-14 13:29:05,544 - JUNIFER - INFO - yeo_networks: 7 2024-08-14 13:29:05,546 - JUNIFER - INFO - Loading parcellation /home/runner/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz 2024-08-14 13:29:05,578 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 2024-08-14 13:29:06,619 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2 2024-08-14 13:29:06,717 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/tmpp3v3ecmt/parcellations3go4oivm/Schaefer1000x7.nii.gz -r /tmp/tmpp3v3ecmt/parcellations3go4oivm/MNI152Lin_T1w_2.0.nii.gz -t /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 -o /tmp/tmp6iia2sew/parcellationswrnva4bk/Schaefer1000x7_warped_from_MNI152NLin6Asym_to_MNI152Lin.nii.gz 2024-08-14 13:29:14,028 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2024-08-14 13:29:15,190 - JUNIFER - INFO - Storing in 2024-08-14 13:29:15,346 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean 2024-08-14 13:29:15,347 - JUNIFER - INFO - Computing VBM_GM 2024-08-14 13:29:15,347 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2024-08-14 13:29:15,347 - JUNIFER - INFO - Parcellation parameters: 2024-08-14 13:29:15,347 - JUNIFER - INFO - resolution: 2.0 2024-08-14 13:29:15,347 - JUNIFER - INFO - n_rois: 1000 2024-08-14 13:29:15,347 - JUNIFER - INFO - yeo_networks: 7 2024-08-14 13:29:15,349 - JUNIFER - INFO - Loading parcellation /home/runner/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz 2024-08-14 13:29:15,382 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 2024-08-14 13:29:16,401 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2 2024-08-14 13:29:16,501 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/tmpp3v3ecmt/parcellations7w2uoxep/Schaefer1000x7.nii.gz -r /tmp/tmpp3v3ecmt/parcellations7w2uoxep/MNI152Lin_T1w_2.0.nii.gz -t /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 -o /tmp/tmp6iia2sew/parcellationsnz6oe2xj/Schaefer1000x7_warped_from_MNI152NLin6Asym_to_MNI152Lin.nii.gz 2024-08-14 13:29:23,894 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2024-08-14 13:29:25,097 - JUNIFER - INFO - Storing in 2024-08-14 13:29:25,258 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std 2024-08-14 13:29:25,258 - JUNIFER - INFO - Computing VBM_GM 2024-08-14 13:29:25,258 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2024-08-14 13:29:25,258 - JUNIFER - INFO - Parcellation parameters: 2024-08-14 13:29:25,258 - JUNIFER - INFO - resolution: 2.0 2024-08-14 13:29:25,259 - JUNIFER - INFO - n_rois: 1000 2024-08-14 13:29:25,259 - JUNIFER - INFO - yeo_networks: 7 2024-08-14 13:29:25,261 - JUNIFER - INFO - Loading parcellation /home/runner/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz 2024-08-14 13:29:25,293 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 2024-08-14 13:29:26,328 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2 2024-08-14 13:29:26,427 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/tmpp3v3ecmt/parcellationsb0x7xbp2/Schaefer1000x7.nii.gz -r /tmp/tmpp3v3ecmt/parcellationsb0x7xbp2/MNI152Lin_T1w_2.0.nii.gz -t /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 -o /tmp/tmp6iia2sew/parcellationsgvyebyuv/Schaefer1000x7_warped_from_MNI152NLin6Asym_to_MNI152Lin.nii.gz 2024-08-14 13:29:33,747 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2024-08-14 13:29:34,891 - JUNIFER - INFO - Storing in 2024-08-14 13:29:35,050 - JUNIFER - INFO - Marker collection fitting done 2024-08-14 13:29:35,051 - JUNIFER - INFO - Getting element sub-08 2024-08-14 13:29:35,051 - JUNIFER - INFO - Fitting pipeline 2024-08-14 13:29:35,051 - JUNIFER - INFO - Reading VBM_GM from /home/runner/nilearn_data/oasis1/OAS1_0009_MR1/mwrc1OAS1_0009_MR1_mpr_anon_fslswapdim_bet.nii.gz 2024-08-14 13:29:35,051 - JUNIFER - INFO - VBM_GM is of type NIFTI 2024-08-14 13:29:35,052 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80 2024-08-14 13:29:35,052 - JUNIFER - INFO - Computing VBM_GM 2024-08-14 13:29:35,053 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2024-08-14 13:29:35,053 - JUNIFER - INFO - Parcellation parameters: 2024-08-14 13:29:35,053 - JUNIFER - INFO - resolution: 2.0 2024-08-14 13:29:35,053 - JUNIFER - INFO - n_rois: 1000 2024-08-14 13:29:35,053 - JUNIFER - INFO - yeo_networks: 7 2024-08-14 13:29:35,055 - JUNIFER - INFO - Loading parcellation /home/runner/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz 2024-08-14 13:29:35,093 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 2024-08-14 13:29:36,117 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2 2024-08-14 13:29:36,216 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/tmpp3v3ecmt/parcellationsjnzb3jo0/Schaefer1000x7.nii.gz -r /tmp/tmpp3v3ecmt/parcellationsjnzb3jo0/MNI152Lin_T1w_2.0.nii.gz -t /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 -o /tmp/tmp4b4eo4a7/parcellations2g0g_gog/Schaefer1000x7_warped_from_MNI152NLin6Asym_to_MNI152Lin.nii.gz 2024-08-14 13:29:43,619 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2024-08-14 13:29:44,788 - JUNIFER - INFO - Storing in 2024-08-14 13:29:44,943 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean 2024-08-14 13:29:44,943 - JUNIFER - INFO - Computing VBM_GM 2024-08-14 13:29:44,944 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2024-08-14 13:29:44,944 - JUNIFER - INFO - Parcellation parameters: 2024-08-14 13:29:44,944 - JUNIFER - INFO - resolution: 2.0 2024-08-14 13:29:44,944 - JUNIFER - INFO - n_rois: 1000 2024-08-14 13:29:44,944 - JUNIFER - INFO - yeo_networks: 7 2024-08-14 13:29:44,946 - JUNIFER - INFO - Loading parcellation /home/runner/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz 2024-08-14 13:29:44,979 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 2024-08-14 13:29:46,005 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2 2024-08-14 13:29:46,103 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/tmpp3v3ecmt/parcellations3j2c29by/Schaefer1000x7.nii.gz -r /tmp/tmpp3v3ecmt/parcellations3j2c29by/MNI152Lin_T1w_2.0.nii.gz -t /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 -o /tmp/tmp4b4eo4a7/parcellationsg4hbtldq/Schaefer1000x7_warped_from_MNI152NLin6Asym_to_MNI152Lin.nii.gz 2024-08-14 13:29:53,529 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2024-08-14 13:29:54,674 - JUNIFER - INFO - Storing in 2024-08-14 13:29:54,830 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std 2024-08-14 13:29:54,830 - JUNIFER - INFO - Computing VBM_GM 2024-08-14 13:29:54,831 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2024-08-14 13:29:54,831 - JUNIFER - INFO - Parcellation parameters: 2024-08-14 13:29:54,831 - JUNIFER - INFO - resolution: 2.0 2024-08-14 13:29:54,831 - JUNIFER - INFO - n_rois: 1000 2024-08-14 13:29:54,831 - JUNIFER - INFO - yeo_networks: 7 2024-08-14 13:29:54,833 - JUNIFER - INFO - Loading parcellation /home/runner/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz 2024-08-14 13:29:54,865 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 2024-08-14 13:29:55,879 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2 2024-08-14 13:29:55,978 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/tmpp3v3ecmt/parcellationsfat04f8n/Schaefer1000x7.nii.gz -r /tmp/tmpp3v3ecmt/parcellationsfat04f8n/MNI152Lin_T1w_2.0.nii.gz -t /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 -o /tmp/tmp4b4eo4a7/parcellationsq0ow5a8d/Schaefer1000x7_warped_from_MNI152NLin6Asym_to_MNI152Lin.nii.gz 2024-08-14 13:30:03,467 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2024-08-14 13:30:04,623 - JUNIFER - INFO - Storing in 2024-08-14 13:30:04,783 - JUNIFER - INFO - Marker collection fitting done 2024-08-14 13:30:04,784 - JUNIFER - INFO - Getting element sub-09 2024-08-14 13:30:04,784 - JUNIFER - INFO - Fitting pipeline 2024-08-14 13:30:04,784 - JUNIFER - INFO - Reading VBM_GM from /home/runner/nilearn_data/oasis1/OAS1_0010_MR1/mwrc1OAS1_0010_MR1_mpr_anon_fslswapdim_bet.nii.gz 2024-08-14 13:30:04,784 - JUNIFER - INFO - VBM_GM is of type NIFTI 2024-08-14 13:30:04,785 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80 2024-08-14 13:30:04,785 - JUNIFER - INFO - Computing VBM_GM 2024-08-14 13:30:04,786 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2024-08-14 13:30:04,786 - JUNIFER - INFO - Parcellation parameters: 2024-08-14 13:30:04,786 - JUNIFER - INFO - resolution: 2.0 2024-08-14 13:30:04,786 - JUNIFER - INFO - n_rois: 1000 2024-08-14 13:30:04,786 - JUNIFER - INFO - yeo_networks: 7 2024-08-14 13:30:04,788 - JUNIFER - INFO - Loading parcellation /home/runner/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz 2024-08-14 13:30:04,819 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 2024-08-14 13:30:05,846 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2 2024-08-14 13:30:05,945 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/tmpp3v3ecmt/parcellations6ujn3hj0/Schaefer1000x7.nii.gz -r /tmp/tmpp3v3ecmt/parcellations6ujn3hj0/MNI152Lin_T1w_2.0.nii.gz -t /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 -o /tmp/tmp749czkl0/parcellationsbqyhxla9/Schaefer1000x7_warped_from_MNI152NLin6Asym_to_MNI152Lin.nii.gz 2024-08-14 13:30:13,331 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2024-08-14 13:30:14,511 - JUNIFER - INFO - Storing in 2024-08-14 13:30:14,664 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean 2024-08-14 13:30:14,664 - JUNIFER - INFO - Computing VBM_GM 2024-08-14 13:30:14,664 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2024-08-14 13:30:14,664 - JUNIFER - INFO - Parcellation parameters: 2024-08-14 13:30:14,664 - JUNIFER - INFO - resolution: 2.0 2024-08-14 13:30:14,664 - JUNIFER - INFO - n_rois: 1000 2024-08-14 13:30:14,664 - JUNIFER - INFO - yeo_networks: 7 2024-08-14 13:30:14,666 - JUNIFER - INFO - Loading parcellation /home/runner/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz 2024-08-14 13:30:14,698 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 2024-08-14 13:30:15,724 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2 2024-08-14 13:30:15,823 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/tmpp3v3ecmt/parcellationsbfvwzo2q/Schaefer1000x7.nii.gz -r /tmp/tmpp3v3ecmt/parcellationsbfvwzo2q/MNI152Lin_T1w_2.0.nii.gz -t /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 -o /tmp/tmp749czkl0/parcellationsdf4gzf8q/Schaefer1000x7_warped_from_MNI152NLin6Asym_to_MNI152Lin.nii.gz 2024-08-14 13:30:23,338 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2024-08-14 13:30:24,492 - JUNIFER - INFO - Storing in 2024-08-14 13:30:24,649 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std 2024-08-14 13:30:24,649 - JUNIFER - INFO - Computing VBM_GM 2024-08-14 13:30:24,650 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2024-08-14 13:30:24,650 - JUNIFER - INFO - Parcellation parameters: 2024-08-14 13:30:24,650 - JUNIFER - INFO - resolution: 2.0 2024-08-14 13:30:24,650 - JUNIFER - INFO - n_rois: 1000 2024-08-14 13:30:24,650 - JUNIFER - INFO - yeo_networks: 7 2024-08-14 13:30:24,652 - JUNIFER - INFO - Loading parcellation /home/runner/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz 2024-08-14 13:30:24,684 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 2024-08-14 13:30:25,702 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2 2024-08-14 13:30:25,800 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/tmpp3v3ecmt/parcellations05bdplow/Schaefer1000x7.nii.gz -r /tmp/tmpp3v3ecmt/parcellations05bdplow/MNI152Lin_T1w_2.0.nii.gz -t /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 -o /tmp/tmp749czkl0/parcellationsepj7zegh/Schaefer1000x7_warped_from_MNI152NLin6Asym_to_MNI152Lin.nii.gz 2024-08-14 13:30:33,174 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2024-08-14 13:30:34,349 - JUNIFER - INFO - Storing in 2024-08-14 13:30:34,512 - JUNIFER - INFO - Marker collection fitting done 2024-08-14 13:30:34,513 - JUNIFER - INFO - Getting element sub-10 2024-08-14 13:30:34,513 - JUNIFER - INFO - Fitting pipeline 2024-08-14 13:30:34,513 - JUNIFER - INFO - Reading VBM_GM from /home/runner/nilearn_data/oasis1/OAS1_0011_MR1/mwrc1OAS1_0011_MR1_mpr_anon_fslswapdim_bet.nii.gz 2024-08-14 13:30:34,513 - JUNIFER - INFO - VBM_GM is of type NIFTI 2024-08-14 13:30:34,514 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80 2024-08-14 13:30:34,514 - JUNIFER - INFO - Computing VBM_GM 2024-08-14 13:30:34,514 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2024-08-14 13:30:34,515 - JUNIFER - INFO - Parcellation parameters: 2024-08-14 13:30:34,515 - JUNIFER - INFO - resolution: 2.0 2024-08-14 13:30:34,515 - JUNIFER - INFO - n_rois: 1000 2024-08-14 13:30:34,515 - JUNIFER - INFO - yeo_networks: 7 2024-08-14 13:30:34,517 - JUNIFER - INFO - Loading parcellation /home/runner/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz 2024-08-14 13:30:34,550 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 2024-08-14 13:30:35,606 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2 2024-08-14 13:30:35,705 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/tmpp3v3ecmt/parcellationsjer31exi/Schaefer1000x7.nii.gz -r /tmp/tmpp3v3ecmt/parcellationsjer31exi/MNI152Lin_T1w_2.0.nii.gz -t /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 -o /tmp/tmpv456n9nv/parcellations17ckd_wf/Schaefer1000x7_warped_from_MNI152NLin6Asym_to_MNI152Lin.nii.gz 2024-08-14 13:30:43,135 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2024-08-14 13:30:44,270 - JUNIFER - INFO - Storing in 2024-08-14 13:30:44,422 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean 2024-08-14 13:30:44,422 - JUNIFER - INFO - Computing VBM_GM 2024-08-14 13:30:44,422 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2024-08-14 13:30:44,422 - JUNIFER - INFO - Parcellation parameters: 2024-08-14 13:30:44,422 - JUNIFER - INFO - resolution: 2.0 2024-08-14 13:30:44,422 - JUNIFER - INFO - n_rois: 1000 2024-08-14 13:30:44,423 - JUNIFER - INFO - yeo_networks: 7 2024-08-14 13:30:44,424 - JUNIFER - INFO - Loading parcellation /home/runner/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz 2024-08-14 13:30:44,457 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 2024-08-14 13:30:45,464 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2 2024-08-14 13:30:45,563 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/tmpp3v3ecmt/parcellations5cspszt_/Schaefer1000x7.nii.gz -r /tmp/tmpp3v3ecmt/parcellations5cspszt_/MNI152Lin_T1w_2.0.nii.gz -t /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 -o /tmp/tmpv456n9nv/parcellations38zeal06/Schaefer1000x7_warped_from_MNI152NLin6Asym_to_MNI152Lin.nii.gz 2024-08-14 13:30:52,882 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2024-08-14 13:30:54,052 - JUNIFER - INFO - Storing in 2024-08-14 13:30:54,209 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std 2024-08-14 13:30:54,209 - JUNIFER - INFO - Computing VBM_GM 2024-08-14 13:30:54,209 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2024-08-14 13:30:54,209 - JUNIFER - INFO - Parcellation parameters: 2024-08-14 13:30:54,209 - JUNIFER - INFO - resolution: 2.0 2024-08-14 13:30:54,210 - JUNIFER - INFO - n_rois: 1000 2024-08-14 13:30:54,210 - JUNIFER - INFO - yeo_networks: 7 2024-08-14 13:30:54,211 - JUNIFER - INFO - Loading parcellation /home/runner/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz 2024-08-14 13:30:54,244 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 2024-08-14 13:30:55,263 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2 2024-08-14 13:30:55,362 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/tmpp3v3ecmt/parcellationse_htfioe/Schaefer1000x7.nii.gz -r /tmp/tmpp3v3ecmt/parcellationse_htfioe/MNI152Lin_T1w_2.0.nii.gz -t /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 -o /tmp/tmpv456n9nv/parcellations_1pspkmf/Schaefer1000x7_warped_from_MNI152NLin6Asym_to_MNI152Lin.nii.gz 2024-08-14 13:31:02,715 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2024-08-14 13:31:03,870 - JUNIFER - INFO - Storing in 2024-08-14 13:31:04,027 - JUNIFER - INFO - Marker collection fitting done | .. code-block:: Python import tempfile import junifer.testing.registry # noqa: F401 from junifer.api import run datagrabber = { "kind": "OasisVBMTestingDataGrabber", } markers = [ { "name": "Schaefer1000x7_TrimMean80", "kind": "ParcelAggregation", "parcellation": "Schaefer1000x7", "method": "trim_mean", "method_params": {"proportiontocut": 0.2}, }, { "name": "Schaefer1000x7_Mean", "kind": "ParcelAggregation", "parcellation": "Schaefer1000x7", "method": "mean", }, { "name": "Schaefer1000x7_Std", "kind": "ParcelAggregation", "parcellation": "Schaefer1000x7", "method": "std", }, ] storage = { "kind": "SQLiteFeatureStorage", } with tempfile.TemporaryDirectory() as tmpdir: uri = f"{tmpdir}/test.sqlite" storage["uri"] = uri run( workdir="/tmp", datagrabber=datagrabber, markers=markers, storage=storage, ) .. rst-class:: sphx-glr-timing **Total running time of the script:** (12 minutes 15.728 seconds) .. _sphx_glr_download_auto_examples_run_run_gmd_mean.py: .. only:: html .. container:: sphx-glr-footer sphx-glr-footer-example .. container:: sphx-glr-download sphx-glr-download-jupyter :download:`Download Jupyter notebook: run_run_gmd_mean.ipynb ` .. container:: sphx-glr-download sphx-glr-download-python :download:`Download Python source code: run_run_gmd_mean.py ` .. only:: html .. rst-class:: sphx-glr-signature `Gallery generated by Sphinx-Gallery `_