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junifer documentation

Contents:

  • 1. Installing junifer
  • 2. Installing external dependencies
  • 3. Understanding junifer
    • 3.1. The Junifer Pipeline
    • 3.2. The Data Object
    • 3.3. Data Grabber
    • 3.4. Data Reader
    • 3.5. Preprocess
    • 3.6. Marker
    • 3.7. Storage
  • 4. Using junifer
    • 4.1. Code-less configuration
    • 4.2. Running jobs
    • 4.3. Collecting results
    • 4.4. Queueing jobs (HPC, HTC)
  • 5. Built-in Pipeline steps and data
  • 6. Extending junifer
    • 6.1. Creating a Junifer extension
    • 6.2. Creating Data Grabbers
    • 6.3. Creating Markers
  • 7. Examples
    • 7.1. Generic BIDS datagrabber for datalad.
    • 7.2. UKB VBM GMD Extraction
    • 7.3. Computer Parcel Aggregation.
    • 7.4. UKB VBM GMD Extraction
    • 7.5. Extracting root sum of squares from edge-wise timeseries.
    • 7.6. HCP FC Extraction
    • 7.7. Run junifer and julearn.
  • 8. API Reference
    • 8.1.1. Data Grabbers
    • 8.1.2. DataReaders
    • 8.1.3. Pre-processing
    • 8.1.4. Markers
    • 8.1.5. Storage
    • 8.2.1. Parcellations
    • 8.2.2. Coordinates
    • 8.2.3. Masks
    • 8.2.4. Stats
    • 8.2.5. Pipeline
    • 8.2.6. Registry
    • 8.2.7. API Functions
    • 8.2.8. Utils
    • 8.2.9. Testing
    • 8.3.1. Configs
  • 9. Contributing to junifer
  • 10. Maintaining
  • 11. FAQs
  • 12. What’s new

Other Versions

Tags
  • v0.0.1
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Python Module Index

j
 
j
- junifer
    junifer.api
    junifer.api.decorators
    junifer.configs.juseless.datagrabbers
    junifer.data.coordinates
    junifer.data.masks
    junifer.data.parcellations
    junifer.datagrabber
    junifer.datareader
    junifer.markers
    junifer.pipeline
    junifer.pipeline.registry
    junifer.preprocess
    junifer.stats
    junifer.storage
    junifer.testing.datagrabbers
    junifer.utils
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