12. What’s new

12.1. Current (0.0.2.dev)

12.1.1. Enhancements

12.1.2. Bugs

12.1.3. API changes

12.2. v0.0.1

12.2.1. Enhancements

• Create the repository based on the mockup by Fede Raimondo.

• Implement junifer.testing.datagrabbers.SPMAuditoryTestingDatagrabber datagrabber (#52 by Fede Raimondo).

• Add comments to junifer.datagrabber.DataladDataGrabber datagrabber and change to use datalad-clone instead of datalad-install (#55 by Benjamin Poldrack).

• Add an example how to use junifer and julearn in one pipeline to extract features and do machine learning (#40 by Leonard Sasse, Nicolas Nieto, and Sami Hamdan).

• Implement matrix storage in SQliteFeatureStorage (#42 by Fede Raimondo).

• Implement junifer.markers.FunctionalConnectivityParcels marker for functional connectivity using a parcellation (#41 by Amir Omidvarnia and Kaustubh R. Patil).

• Add documentation for the datagrabbers (by Leonard Sasse, Nicolas Nieto, and Sami Hamdan).

• Implement coordinate register, list and load (#11 by Fede Raimondo).

• Add junifer.datagrabber.DataladAOMICID1000 datagrabber for AOMIC ID1000 dataset including tests and creation of mock dataset for testing (#60 by Vera Komeyer, Xuan Li).

• Add support to access other input in the data object in the compute method (by Fede Raimondo).

• Implement junifer.markers.RSSETSMarker marker (#51 by Leonard Sasse, Nicolas Nieto, Sami Hamdan).

• Implement junifer.markers.SphereAggregation marker (by Fede Raimondo).

• Implement junifer.datagrabber.DataladAOMICPIOP1 and junifer.datagrabber.DataladAOMICPIOP2 datagrabbers for AOMIC PIOP1 and PIOP2 datasets respectively and refactor junifer.datagrabber.DataladAOMICID1000 slightly (#94 by Leonard Sasse)

• Implement junifer.configs.juseless.datagrabbers.JuselessDataladCamCANVBM datagrabber (#99 by Leonard Sasse)

• Implement junifer.configs.juseless.datagrabbers.JuselessDataladIXIVBM CAT output datagrabber for juseless (#48 by Leonard Sasse).

• Upgrade storage interface for storage-like objects (#84 by Synchon Mandal).

• Add missing type annotations (#74 by Synchon Mandal).

• Add junifer wtf to report environment details (#33 by Synchon Mandal).

• Add junifer selftest to report environment details (#9 by Synchon Mandal).

• Refactor markers on attribute and get_valid_inputs to verify that the marker can be computed on the input data types (by Fede Raimondo)

• Implement junifer.configs.juseless.datagrabbers.JuselessDataladAOMICID1000VBM datagrabber for accessing AOMIC ID1000 VBM from juseless (#57 by Felix Hoffstaedter and Synchon Mandal)

• Add test for junifer.datagrabber.DataladHCP1200 datagrabber (#93 by Synchon Mandal).

• Change documentation template to furo. Fix references and standardize documentation (#114 by Fede Raimondo).

• Add junifer.preprocess.fMRIPrepConfoundRemover (#111 by Fede Raimondo and Leonard Sasse).

• Implement junifer.markers.CrossParcellationFC marker (#85 by Leonard Sasse and Kaustubh R. Patil)

• Add junifer.configs.juseless.datagrabbers.JuselessUCLA datagrabber for the UCLA dataset available on juseless (#118 by Leonard Sasse).

• Rename “atlas” to “parcellation” (#116 by Fede Raimondo).

• Refactor the junifer.datagrabber.BaseDataGrabber class to allow for easier subclassing (#123 by Fede Raimondo).

• Allow custom aggregation method for junifer.markers.SphereAggregation (#102 by Synchon Mandal).

• Add support for “masks” (#79 by Fede Raimondo).

• Allow junifer.markers.ParcelAggregation to apply multiple parcellations at once (#131 by Fede Raimondo).

• Introduce a singleton decorator for marker computations (#151 by Synchon Mandal).

• Refactor junifer.pipeline.PipelineStepMixin to improve its implementation and validation for pipeline steps (#152 by Synchon Mandal).

• Implement junifer.markers.ReHoParcels and junifer.markers.ReHoSpheres markers (#36 by Synchon Mandal).

• Implement junifer.markers.AmplitudeLowFrequencyFluctuationParcels and junifer.markers.AmplitudeLowFrequencyFluctuationSpheres markers (#35 by Fede Raimondo).

12.2.2. Bugs

• Fix a bug in which a junifer.datagrabber.PatternDataGrabber would now work with relative datadir paths. (#96 by Leonard Sasse, fixed in #98 by Fede Raimondo).

• Fix a bug in which junifer.datagrabber.DataladAOMICPIOP2 datagrabber did not use user input to constrain elements based on tasks (#105 by Leonard Sasse)

• Fix a bug in which a datalad dataset could remove a user-cloned dataset (#53 by Fede Raimondo)

• Fix a bug in which CLI command would not work using elements with more than one field (by Fede Raimondo).

• Fix a bug in which the generated DAG for HTCondor will not work (#143 by Fede Raimondo).

12.2.3. API changes

• Change the single_output default parameter in storage classes from False to True (#134 by Fede Raimondo).