Index

A

aggregate() (junifer.markers.EdgeCentricFCParcels method) (junifer.markers.EdgeCentricFCSpheres method) (junifer.markers.FunctionalConnectivityParcels method) (junifer.markers.FunctionalConnectivitySpheres method) (junifer.markers.TemporalSNRParcels method) (junifer.markers.TemporalSNRSpheres method)

ALFFParcels (class in junifer.markers) ALFFSpheres (class in junifer.markers)

B

BaseDataGrabber (class in junifer.datagrabber) BaseFeatureStorage (class in junifer.storage)

BaseMarker (class in junifer.markers) BasePreprocessor (class in junifer.preprocess) build() (in module junifer.pipeline.registry)

C

cleanup() (junifer.datagrabber.DataladDataGrabber method) collect() (in module junifer.api) (junifer.storage.BaseFeatureStorage method) (junifer.storage.HDF5FeatureStorage method) (junifer.storage.SQLiteFeatureStorage method) compute() (junifer.markers.BaseMarker method) (junifer.markers.CrossParcellationFC method) (junifer.markers.ParcelAggregation method) (junifer.markers.ReHoParcels method) (junifer.markers.ReHoSpheres method) (junifer.markers.RSSETSMarker method) (junifer.markers.SphereAggregation method)

configure_logging() (in module junifer.utils) count() (in module junifer.stats) CrossParcellationFC (class in junifer.markers)

D

datadir (junifer.datagrabber.BaseDataGrabber property) (junifer.datagrabber.DataladDataGrabber property) DataladAOMICID1000 (class in junifer.datagrabber) DataladAOMICPIOP1 (class in junifer.datagrabber)

DataladAOMICPIOP2 (class in junifer.datagrabber) DataladDataGrabber (class in junifer.datagrabber) DataladHCP1200 (class in junifer.datagrabber) DefaultDataReader (class in junifer.datareader)

E

EdgeCentricFCParcels (class in junifer.markers)

EdgeCentricFCSpheres (class in junifer.markers) element_to_index() (junifer.storage.PandasBaseFeatureStorage static method)

F

fit() (junifer.markers.MarkerCollection method) fit_transform() (junifer.pipeline.PipelineStepMixin method)

fMRIPrepConfoundRemover (class in junifer.preprocess) FunctionalConnectivityParcels (class in junifer.markers) FunctionalConnectivitySpheres (class in junifer.markers)

G

get_aggfunc_by_name() (in module junifer.stats) get_class() (in module junifer.pipeline.registry) get_element_keys() (junifer.datagrabber.BaseDataGrabber method) (junifer.datagrabber.MultipleDataGrabber method) (junifer.datagrabber.PatternDataGrabber method) (junifer.testing.datagrabbers.OasisVBMTestingDatagrabber method) (junifer.testing.datagrabbers.PartlyCloudyTestingDataGrabber method) (junifer.testing.datagrabbers.SPMAuditoryTestingDatagrabber method) get_elements() (junifer.configs.juseless.datagrabbers.JuselessUCLA method) (junifer.datagrabber.BaseDataGrabber method) (junifer.datagrabber.DataladAOMICPIOP1 method) (junifer.datagrabber.DataladAOMICPIOP2 method) (junifer.datagrabber.HCP1200 method) (junifer.datagrabber.MultipleDataGrabber method) (junifer.datagrabber.PatternDataGrabber method) (junifer.testing.datagrabbers.OasisVBMTestingDatagrabber method) (junifer.testing.datagrabbers.PartlyCloudyTestingDataGrabber method) (junifer.testing.datagrabbers.SPMAuditoryTestingDatagrabber method) get_engine() (junifer.storage.SQLiteFeatureStorage method) get_item() (junifer.datagrabber.BaseDataGrabber method) (junifer.datagrabber.DataladAOMICID1000 method) (junifer.datagrabber.DataladAOMICPIOP1 method) (junifer.datagrabber.DataladAOMICPIOP2 method) (junifer.datagrabber.HCP1200 method) (junifer.datagrabber.MultipleDataGrabber method) (junifer.datagrabber.PatternDataGrabber method) (junifer.testing.datagrabbers.OasisVBMTestingDatagrabber method) (junifer.testing.datagrabbers.PartlyCloudyTestingDataGrabber method) (junifer.testing.datagrabbers.SPMAuditoryTestingDatagrabber method)

get_mask() (in module junifer.data.masks) get_output_type() (junifer.datareader.DefaultDataReader method) (junifer.markers.BaseMarker method) (junifer.markers.CrossParcellationFC method) (junifer.markers.ParcelAggregation method) (junifer.markers.RSSETSMarker method) (junifer.markers.SphereAggregation method) (junifer.pipeline.PipelineStepMixin method) (junifer.preprocess.BasePreprocessor method) (junifer.preprocess.fMRIPrepConfoundRemover method) get_step_names() (in module junifer.pipeline.registry) get_types() (junifer.datagrabber.BaseDataGrabber method) (junifer.datagrabber.MultipleDataGrabber method) get_valid_inputs() (junifer.markers.BaseMarker method) (junifer.markers.CrossParcellationFC method) (junifer.markers.ParcelAggregation method) (junifer.markers.RSSETSMarker method) (junifer.markers.SphereAggregation method) (junifer.preprocess.BasePreprocessor method) (junifer.preprocess.fMRIPrepConfoundRemover method) (junifer.storage.BaseFeatureStorage method) (junifer.storage.HDF5FeatureStorage method) (junifer.storage.PandasBaseFeatureStorage method)

H

HCP1200 (class in junifer.datagrabber)

HDF5FeatureStorage (class in junifer.storage)

I

install() (junifer.datagrabber.DataladDataGrabber method)

inverse_transform() (junifer.external.nilearn.JuniferNiftiSpheresMasker method)

J

junifer.api module junifer.api.decorators module junifer.configs.juseless.datagrabbers module junifer.data.coordinates module junifer.data.masks module junifer.data.parcellations module junifer.datagrabber module junifer.datareader module junifer.external.nilearn module junifer.markers module

junifer.pipeline module junifer.pipeline.registry module junifer.preprocess module junifer.stats module junifer.storage module junifer.testing.datagrabbers module junifer.utils module JuniferNiftiSpheresMasker (class in junifer.external.nilearn) JuselessDataladAOMICID1000VBM (class in junifer.configs.juseless.datagrabbers) JuselessDataladCamCANVBM (class in junifer.configs.juseless.datagrabbers) JuselessDataladIXIVBM (class in junifer.configs.juseless.datagrabbers) JuselessDataladUKBVBM (class in junifer.configs.juseless.datagrabbers) JuselessUCLA (class in junifer.configs.juseless.datagrabbers)

L

list_coordinates() (in module junifer.data.coordinates) list_features() (junifer.storage.BaseFeatureStorage method) (junifer.storage.HDF5FeatureStorage method) (junifer.storage.SQLiteFeatureStorage method)

list_masks() (in module junifer.data.masks) list_parcellations() (in module junifer.data.parcellations) load_coordinates() (in module junifer.data.coordinates) load_mask() (in module junifer.data.masks) load_parcellation() (in module junifer.data.parcellations)

M

make_executable() (in module junifer.utils) MarkerCollection (class in junifer.markers) merge_parcellations() (in module junifer.data.parcellations) module junifer.api junifer.api.decorators junifer.configs.juseless.datagrabbers junifer.data.coordinates junifer.data.masks junifer.data.parcellations junifer.datagrabber junifer.datareader junifer.external.nilearn junifer.markers junifer.pipeline junifer.pipeline.registry junifer.preprocess junifer.stats junifer.storage junifer.testing.datagrabbers junifer.utils

MultipleDataGrabber (class in junifer.datagrabber)

O

OasisVBMTestingDatagrabber (class in junifer.testing.datagrabbers)

P

PandasBaseFeatureStorage (class in junifer.storage) ParcelAggregation (class in junifer.markers) PartlyCloudyTestingDataGrabber (class in junifer.testing.datagrabbers) PatternDataGrabber (class in junifer.datagrabber)

PatternDataladDataGrabber (class in junifer.datagrabber) PipelineStepMixin (class in junifer.pipeline) preprocess() (junifer.preprocess.BasePreprocessor method) (junifer.preprocess.fMRIPrepConfoundRemover method)

Q

queue() (in module junifer.api)

R

raise_error() (in module junifer.utils) read_df() (junifer.storage.BaseFeatureStorage method) (junifer.storage.HDF5FeatureStorage method) (junifer.storage.SQLiteFeatureStorage method) register() (in module junifer.api.decorators) (in module junifer.pipeline.registry) register_coordinates() (in module junifer.data.coordinates) register_datagrabber() (in module junifer.api.decorators) register_datareader() (in module junifer.api.decorators)

register_marker() (in module junifer.api.decorators) register_mask() (in module junifer.data.masks) register_parcellation() (in module junifer.data.parcellations) register_preprocessor() (in module junifer.api.decorators) register_storage() (in module junifer.api.decorators) ReHoParcels (class in junifer.markers) ReHoSpheres (class in junifer.markers) RSSETSMarker (class in junifer.markers) run() (in module junifer.api)

S

select() (in module junifer.stats) skip_file_check (junifer.datagrabber.DataladHCP1200 property) (junifer.datagrabber.PatternDataGrabber property) SphereAggregation (class in junifer.markers) SPMAuditoryTestingDatagrabber (class in junifer.testing.datagrabbers) SQLiteFeatureStorage (class in junifer.storage) store() (junifer.markers.BaseMarker method) (junifer.storage.BaseFeatureStorage method) store_df() (junifer.storage.PandasBaseFeatureStorage method) (junifer.storage.SQLiteFeatureStorage method) store_matrix() (junifer.storage.BaseFeatureStorage method) (junifer.storage.HDF5FeatureStorage method) (junifer.storage.SQLiteFeatureStorage method)

store_metadata() (junifer.storage.BaseFeatureStorage method) (junifer.storage.HDF5FeatureStorage method) (junifer.storage.SQLiteFeatureStorage method) store_timeseries() (junifer.storage.BaseFeatureStorage method) (junifer.storage.HDF5FeatureStorage method) (junifer.storage.PandasBaseFeatureStorage method) store_vector() (junifer.storage.BaseFeatureStorage method) (junifer.storage.HDF5FeatureStorage method) (junifer.storage.PandasBaseFeatureStorage method)

T

TemporalSNRParcels (class in junifer.markers)

TemporalSNRSpheres (class in junifer.markers) transform_single_imgs() (junifer.external.nilearn.JuniferNiftiSpheresMasker method)

U

update_meta() (junifer.pipeline.UpdateMetaMixin method)

UpdateMetaMixin (class in junifer.pipeline)

V

validate() (junifer.markers.MarkerCollection method) (junifer.pipeline.PipelineStepMixin method) (junifer.storage.BaseFeatureStorage method) validate_input() (junifer.datareader.DefaultDataReader method) (junifer.markers.BaseMarker method) (junifer.pipeline.PipelineStepMixin method) (junifer.preprocess.BasePreprocessor method) (junifer.preprocess.fMRIPrepConfoundRemover method)

W

warn_with_log() (in module junifer.utils)

winsorized_mean() (in module junifer.stats)