9.3.1. Configs

Juseless

Provide imports for datagrabbers sub-package.

class junifer.configs.juseless.datagrabbers.JuselessDataladAOMICID1000VBM(datadir=None)

Juseless AOMICID1000 VBM Data Grabber class.

Implements a Data Grabber to access the AOMICID1000 VBM data in Juseless.

Parameters:

datadirstr or pathlib.Path, optional

The directory where the datalad dataset will be cloned. If None, the datalad dataset will be cloned into a temporary directory (default None).

class junifer.configs.juseless.datagrabbers.JuselessDataladCamCANVBM(datadir=None)

Juseless CamCAN VBM Data Grabber class.

Implements a Data Grabber to access the CamCAN VBM data in Juseless.

Parameters:

datadirstr or pathlib.Path, optional

The directory where the datalad dataset will be cloned. If None, the datalad dataset will be cloned into a temporary directory (default None).

class junifer.configs.juseless.datagrabbers.JuselessDataladIXIVBM(datadir=None, sites=None)

Juseless IXI VBM Data Grabber class.

Implements a Data Grabber to access the IXI VBM data in Juseless.

Parameters:

datadirstr or pathlib.Path, optional

The directory where the datalad dataset will be cloned. If None, the datalad dataset will be cloned into a temporary directory (default None).

sites{“Guys”, “HH”, “IOP”} or list of the options, optional.

Which sites to access data from. If None, all available sites are selected (default None).

class junifer.configs.juseless.datagrabbers.JuselessDataladUKBVBM(datadir=None)

Juseless UKB VBM Data Grabber class.

Implements a Data Grabber to access the UKB VBM data in Juseless.

Parameters:

datadirstr or pathlib.Path, optional

The directory where the datalad dataset will be cloned. If None, the datalad dataset will be cloned into a temporary directory (default None).

class junifer.configs.juseless.datagrabbers.JuselessUCLA(datadir='/data/project/psychosis_thalamus/data/fmriprep', tasks=None)

Concrete implementation for pattern-based data fetching of UCLA data.

Parameters:

datadirstr or Path, optional

The directory where the dataset is stored (default ‘/data/project/psychosis_thalamus/data/fmriprep’).

tasks{“rest”, “bart”, “bht”, “pamenc”, “pamret”, “scap”, “taskswitch”, “stopsignal”} or list of the options, optional

UCLA task sessions. If None, all available task sessions are selected (default None).

get_elements()

Implement fetching list of elements in the dataset.

Returns:

elementslist

The list of elements that can be grabbed in the dataset after imposing constraints based on specified tasks.