Note
Go to the end to download the full example code.
8.7. Run junifer and julearn.¶
This example uses a ParcelAggregation marker to compute the mean of each parcel using the Schaefer parcellation (100 rois, 7 Yeo networks) for a 3D nifti to extract some features for machine learning using julearn to predict some other data.
Authors: Leonard Sasse, Sami Hamdan, Nicolas Nieto, Synchon Mandal
License: BSD 3 clause
import tempfile
import nilearn
import pandas as pd
from julearn import run_cross_validation, PipelineCreator
import junifer.testing.registry # noqa: F401
from junifer.api import collect, run
from junifer.storage.sqlite import SQLiteFeatureStorage
from junifer.utils import configure_logging
Set the logging level to info to see extra information:
configure_logging(level="INFO")
2026-10-07 20:12:21 [info ] ===== Lib Versions ===== [junifer]
2026-10-07 20:12:21 [info ] click: 8.1.8 [junifer]
2026-10-07 20:12:21 [info ] numpy: 1.26.4 [junifer]
2026-10-07 20:12:21 [info ] scipy: 1.15.0 [junifer]
2026-10-07 20:12:21 [info ] datalad: 1.1.6 [junifer]
2026-10-07 20:12:21 [info ] pandas: 2.1.4 [junifer]
2026-10-07 20:12:21 [info ] nibabel: 5.3.3 [junifer]
2026-10-07 20:12:21 [info ] nilearn: 0.10.4 [junifer]
2026-10-07 20:12:21 [info ] sqlalchemy: 2.1.0 [junifer]
2026-10-07 20:12:21 [info ] ruamel.yaml: 0.18.17 [junifer]
2026-10-07 20:12:21 [info ] tqdm: 4.66.6 [junifer]
2026-10-07 20:12:21 [info ] templateflow: 24.2.2 [junifer]
2026-10-07 20:12:21 [info ] junifer_data: None [junifer]
2026-10-07 20:12:21 [info ] junifer: 0.0.7 [junifer]
2026-10-07 20:12:21 [info ] ======================== [junifer]
Define the markers you want:
marker_dicts = [
{
"name": "Schaefer100x17_TrimMean80",
"kind": "ParcelAggregation",
"parcellation": "Schaefer100x17",
"method": "trim_mean",
"method_params": {"proportiontocut": 0.2},
},
{
"name": "Schaefer200x17_Mean",
"kind": "ParcelAggregation",
"parcellation": "Schaefer200x17",
"method": "mean",
},
]
Define target and confounds for julearn machine learning:
Load the VBM phenotype data for machine learning data: - Fetch the Oasis dataset
oasis_dataset = nilearn.datasets.fetch_oasis_vbm()
age = oasis_dataset.ext_vars[y][:10]
sex = (
pd.Series(oasis_dataset.ext_vars["mf"][:10])
.map(lambda x: 1 if x == "F" else 0)
.values
)
Create a temporary directory for junifer feature extraction:
with tempfile.TemporaryDirectory() as tmpdir:
storage = {"kind": "SQLiteFeatureStorage", "uri": f"{tmpdir}/test.sqlite"}
# run the defined junifer feature extraction pipeline
run(
workdir="/tmp",
datagrabber={"kind": "OasisVBMTestingDataGrabber"},
markers=marker_dicts,
storage=storage,
)
# read in extracted features and add confounds and targets
# for julearn run cross validation
collect(storage)
db = SQLiteFeatureStorage(uri=storage["uri"])
df_vbm = db.read_df(feature_name="VBM_GM_Schaefer200x17_Mean_aggregation")
oasis_subjects = [x[0] for x in df_vbm.index]
df_vbm.index = oasis_subjects
2026-10-07 20:12:21 [info ] Validating Marker Collection [junifer]
2026-10-07 20:12:21 [info ] DataGrabber output type: ['VBM_GM'] [junifer]
2026-10-07 20:12:21 [info ] Validating Data Reader: [junifer]
2026-10-07 20:12:21 [info ] Data Reader output type: ['VBM_GM'] [junifer]
2026-10-07 20:12:21 [info ] Validating Marker: Schaefer100x17_TrimMean80 [junifer]
2026-10-07 20:12:21 [info ] Marker output type: ['vector'] [junifer]
2026-10-07 20:12:21 [info ] Validating storage for Schaefer100x17_TrimMean80 [junifer]
2026-10-07 20:12:21 [info ] Validating Marker: Schaefer200x17_Mean [junifer]
2026-10-07 20:12:21 [info ] Marker output type: ['vector'] [junifer]
2026-10-07 20:12:21 [info ] Validating storage for Schaefer200x17_Mean [junifer]
2026-10-07 20:12:21 [info ] Getting element sub-01 [junifer]
2026-10-07 20:12:21 [info ] Fitting pipeline [junifer]
2026-10-07 20:12:21 [info ] Reading VBM_GM from /home/docker/nilearn_data/oasis1/OAS1_0001_MR1/mwrc1OAS1_0001_MR1_mpr_anon_fslswapdim_bet.nii.gz [junifer]
2026-10-07 20:12:21 [info ] VBM_GM is of type NIFTI [junifer]
2026-10-07 20:12:21 [info ] Fitting marker Schaefer100x17_TrimMean80 [junifer]
2026-10-07 20:12:21 [info ] Computing VBM_GM [junifer]
2026-10-07 20:12:21 [info ] Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution [junifer]
2026-10-07 20:12:21 [info ] Parcellation parameters: [junifer]
2026-10-07 20:12:21 [info ] resolution: None [junifer]
2026-10-07 20:12:21 [info ] n_rois: 100 [junifer]
2026-10-07 20:12:21 [info ] yeo_networks: 17 [junifer]
2026-10-07 20:12:21 [info ] Resolution set to None, using highest resolution. [junifer]
2026-10-07 20:12:21 [info ] Loading parcellation: /home/docker/junifer_data/v7/parcellations/Schaefer2018/Yeo2011/Schaefer2018_100Parcels_17Networks_order_FSLMNI152_1mm.nii.gz [junifer]
2026-10-07 20:12:27 [info ] Downloading template MNI152Lin (T1w in resolution 1) [junifer]
2026-10-07 20:12:28 [info ] antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpkmm5fif8/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_67e20a4c-c28b-11f1-9c61-c662fa6c4243ecahez00/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpkmm5fif8/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_67e20a4c-c28b-11f1-9c61-c662fa6c4243ecahez00/MNI152Lin_T1w.nii.gz -t /home/docker/junifer_data/v7/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpkmm5fif8/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_67e20a4c-c28b-11f1-9c61-c662fa6c4243ecahez00/parcellation_warped.nii.gz [junifer]
2026-10-07 20:12:42 [info ] antsApplyTransforms command succeeded with the following output:
[junifer]
2026-10-07 20:12:46 [info ] Storing in <SQLiteFeatureStorage @ /tmp/tmpmkfobtvf/test.sqlite (multiple output)> [junifer]
2026-10-07 20:12:46 [info ] Fitting marker Schaefer200x17_Mean [junifer]
2026-10-07 20:12:46 [info ] Computing VBM_GM [junifer]
2026-10-07 20:12:46 [info ] Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution [junifer]
2026-10-07 20:12:46 [info ] Parcellation parameters: [junifer]
2026-10-07 20:12:46 [info ] resolution: None [junifer]
2026-10-07 20:12:46 [info ] n_rois: 200 [junifer]
2026-10-07 20:12:46 [info ] yeo_networks: 17 [junifer]
2026-10-07 20:12:46 [info ] Resolution set to None, using highest resolution. [junifer]
2026-10-07 20:12:46 [info ] Loading parcellation: /home/docker/junifer_data/v7/parcellations/Schaefer2018/Yeo2011/Schaefer2018_200Parcels_17Networks_order_FSLMNI152_1mm.nii.gz [junifer]
2026-10-07 20:12:51 [info ] Downloading template MNI152Lin (T1w in resolution 1) [junifer]
2026-10-07 20:12:52 [info ] antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpkmm5fif8/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_768c4be8-c28b-11f1-9c61-c662fa6c4243ix13k6b9/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpkmm5fif8/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_768c4be8-c28b-11f1-9c61-c662fa6c4243ix13k6b9/MNI152Lin_T1w.nii.gz -t /home/docker/junifer_data/v7/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpkmm5fif8/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_768c4be8-c28b-11f1-9c61-c662fa6c4243ix13k6b9/parcellation_warped.nii.gz [junifer]
2026-10-07 20:13:21 [info ] antsApplyTransforms command succeeded with the following output:
[junifer]
2026-10-07 20:13:25 [info ] Storing in <SQLiteFeatureStorage @ /tmp/tmpmkfobtvf/test.sqlite (multiple output)> [junifer]
2026-10-07 20:13:25 [info ] Marker collection fitting done [junifer]
2026-10-07 20:13:25 [info ] Getting element sub-02 [junifer]
2026-10-07 20:13:25 [info ] Fitting pipeline [junifer]
2026-10-07 20:13:25 [info ] Reading VBM_GM from /home/docker/nilearn_data/oasis1/OAS1_0002_MR1/mwrc1OAS1_0002_MR1_mpr_anon_fslswapdim_bet.nii.gz [junifer]
2026-10-07 20:13:25 [info ] VBM_GM is of type NIFTI [junifer]
2026-10-07 20:13:25 [info ] Fitting marker Schaefer100x17_TrimMean80 [junifer]
2026-10-07 20:13:25 [info ] Computing VBM_GM [junifer]
2026-10-07 20:13:25 [info ] Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution [junifer]
2026-10-07 20:13:25 [info ] Parcellation parameters: [junifer]
2026-10-07 20:13:25 [info ] resolution: None [junifer]
2026-10-07 20:13:25 [info ] n_rois: 100 [junifer]
2026-10-07 20:13:25 [info ] yeo_networks: 17 [junifer]
2026-10-07 20:13:25 [info ] Resolution set to None, using highest resolution. [junifer]
2026-10-07 20:13:26 [info ] Loading parcellation: /home/docker/junifer_data/v7/parcellations/Schaefer2018/Yeo2011/Schaefer2018_100Parcels_17Networks_order_FSLMNI152_1mm.nii.gz [junifer]
2026-10-07 20:13:32 [info ] Downloading template MNI152Lin (T1w in resolution 1) [junifer]
2026-10-07 20:13:33 [info ] antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpe2g_0zad/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_8e3568e2-c28b-11f1-9c61-c662fa6c4243wr3e6dzp/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpe2g_0zad/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_8e3568e2-c28b-11f1-9c61-c662fa6c4243wr3e6dzp/MNI152Lin_T1w.nii.gz -t /home/docker/junifer_data/v7/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpe2g_0zad/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_8e3568e2-c28b-11f1-9c61-c662fa6c4243wr3e6dzp/parcellation_warped.nii.gz [junifer]
2026-10-07 20:13:49 [info ] antsApplyTransforms command succeeded with the following output:
[junifer]
2026-10-07 20:13:53 [info ] Storing in <SQLiteFeatureStorage @ /tmp/tmpmkfobtvf/test.sqlite (multiple output)> [junifer]
2026-10-07 20:13:53 [info ] Fitting marker Schaefer200x17_Mean [junifer]
2026-10-07 20:13:53 [info ] Computing VBM_GM [junifer]
2026-10-07 20:13:53 [info ] Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution [junifer]
2026-10-07 20:13:53 [info ] Parcellation parameters: [junifer]
2026-10-07 20:13:53 [info ] resolution: None [junifer]
2026-10-07 20:13:53 [info ] n_rois: 200 [junifer]
2026-10-07 20:13:53 [info ] yeo_networks: 17 [junifer]
2026-10-07 20:13:53 [info ] Resolution set to None, using highest resolution. [junifer]
2026-10-07 20:13:53 [info ] Loading parcellation: /home/docker/junifer_data/v7/parcellations/Schaefer2018/Yeo2011/Schaefer2018_200Parcels_17Networks_order_FSLMNI152_1mm.nii.gz [junifer]
2026-10-07 20:13:59 [info ] Downloading template MNI152Lin (T1w in resolution 1) [junifer]
2026-10-07 20:14:00 [info ] antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpe2g_0zad/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_9ea0f732-c28b-11f1-9c61-c662fa6c4243k3oo796x/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpe2g_0zad/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_9ea0f732-c28b-11f1-9c61-c662fa6c4243k3oo796x/MNI152Lin_T1w.nii.gz -t /home/docker/junifer_data/v7/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpe2g_0zad/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_9ea0f732-c28b-11f1-9c61-c662fa6c4243k3oo796x/parcellation_warped.nii.gz [junifer]
2026-10-07 20:14:26 [info ] antsApplyTransforms command succeeded with the following output:
[junifer]
2026-10-07 20:14:30 [info ] Storing in <SQLiteFeatureStorage @ /tmp/tmpmkfobtvf/test.sqlite (multiple output)> [junifer]
2026-10-07 20:14:30 [info ] Marker collection fitting done [junifer]
2026-10-07 20:14:30 [info ] Getting element sub-03 [junifer]
2026-10-07 20:14:30 [info ] Fitting pipeline [junifer]
2026-10-07 20:14:30 [info ] Reading VBM_GM from /home/docker/nilearn_data/oasis1/OAS1_0003_MR1/mwrc1OAS1_0003_MR1_mpr_anon_fslswapdim_bet.nii.gz [junifer]
2026-10-07 20:14:30 [info ] VBM_GM is of type NIFTI [junifer]
2026-10-07 20:14:30 [info ] Fitting marker Schaefer100x17_TrimMean80 [junifer]
2026-10-07 20:14:30 [info ] Computing VBM_GM [junifer]
2026-10-07 20:14:30 [info ] Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution [junifer]
2026-10-07 20:14:30 [info ] Parcellation parameters: [junifer]
2026-10-07 20:14:30 [info ] resolution: None [junifer]
2026-10-07 20:14:30 [info ] n_rois: 100 [junifer]
2026-10-07 20:14:30 [info ] yeo_networks: 17 [junifer]
2026-10-07 20:14:30 [info ] Resolution set to None, using highest resolution. [junifer]
2026-10-07 20:14:30 [info ] Loading parcellation: /home/docker/junifer_data/v7/parcellations/Schaefer2018/Yeo2011/Schaefer2018_100Parcels_17Networks_order_FSLMNI152_1mm.nii.gz [junifer]
2026-10-07 20:14:36 [info ] Downloading template MNI152Lin (T1w in resolution 1) [junifer]
2026-10-07 20:14:36 [info ] antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp5e6h4hfg/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_b4afaa3c-c28b-11f1-9c61-c662fa6c4243z75yl0oe/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp5e6h4hfg/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_b4afaa3c-c28b-11f1-9c61-c662fa6c4243z75yl0oe/MNI152Lin_T1w.nii.gz -t /home/docker/junifer_data/v7/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmp5e6h4hfg/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_b4afaa3c-c28b-11f1-9c61-c662fa6c4243z75yl0oe/parcellation_warped.nii.gz [junifer]
2026-10-07 20:14:52 [info ] antsApplyTransforms command succeeded with the following output:
[junifer]
2026-10-07 20:14:56 [info ] Storing in <SQLiteFeatureStorage @ /tmp/tmpmkfobtvf/test.sqlite (multiple output)> [junifer]
2026-10-07 20:14:56 [info ] Fitting marker Schaefer200x17_Mean [junifer]
2026-10-07 20:14:56 [info ] Computing VBM_GM [junifer]
2026-10-07 20:14:56 [info ] Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution [junifer]
2026-10-07 20:14:56 [info ] Parcellation parameters: [junifer]
2026-10-07 20:14:56 [info ] resolution: None [junifer]
2026-10-07 20:14:56 [info ] n_rois: 200 [junifer]
2026-10-07 20:14:56 [info ] yeo_networks: 17 [junifer]
2026-10-07 20:14:56 [info ] Resolution set to None, using highest resolution. [junifer]
2026-10-07 20:14:57 [info ] Loading parcellation: /home/docker/junifer_data/v7/parcellations/Schaefer2018/Yeo2011/Schaefer2018_200Parcels_17Networks_order_FSLMNI152_1mm.nii.gz [junifer]
2026-10-07 20:15:03 [info ] Downloading template MNI152Lin (T1w in resolution 1) [junifer]
2026-10-07 20:15:04 [info ] antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp5e6h4hfg/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_c4611704-c28b-11f1-9c61-c662fa6c4243lqqwcorb/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp5e6h4hfg/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_c4611704-c28b-11f1-9c61-c662fa6c4243lqqwcorb/MNI152Lin_T1w.nii.gz -t /home/docker/junifer_data/v7/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmp5e6h4hfg/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_c4611704-c28b-11f1-9c61-c662fa6c4243lqqwcorb/parcellation_warped.nii.gz [junifer]
2026-10-07 20:15:36 [info ] antsApplyTransforms command succeeded with the following output:
[junifer]
2026-10-07 20:15:40 [info ] Storing in <SQLiteFeatureStorage @ /tmp/tmpmkfobtvf/test.sqlite (multiple output)> [junifer]
2026-10-07 20:15:40 [info ] Marker collection fitting done [junifer]
2026-10-07 20:15:40 [info ] Getting element sub-04 [junifer]
2026-10-07 20:15:40 [info ] Fitting pipeline [junifer]
2026-10-07 20:15:40 [info ] Reading VBM_GM from /home/docker/nilearn_data/oasis1/OAS1_0004_MR1/mwrc1OAS1_0004_MR1_mpr_anon_fslswapdim_bet.nii.gz [junifer]
2026-10-07 20:15:40 [info ] VBM_GM is of type NIFTI [junifer]
2026-10-07 20:15:40 [info ] Fitting marker Schaefer100x17_TrimMean80 [junifer]
2026-10-07 20:15:40 [info ] Computing VBM_GM [junifer]
2026-10-07 20:15:40 [info ] Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution [junifer]
2026-10-07 20:15:40 [info ] Parcellation parameters: [junifer]
2026-10-07 20:15:40 [info ] resolution: None [junifer]
2026-10-07 20:15:40 [info ] n_rois: 100 [junifer]
2026-10-07 20:15:40 [info ] yeo_networks: 17 [junifer]
2026-10-07 20:15:40 [info ] Resolution set to None, using highest resolution. [junifer]
2026-10-07 20:15:41 [info ] Loading parcellation: /home/docker/junifer_data/v7/parcellations/Schaefer2018/Yeo2011/Schaefer2018_100Parcels_17Networks_order_FSLMNI152_1mm.nii.gz [junifer]
2026-10-07 20:15:47 [info ] Downloading template MNI152Lin (T1w in resolution 1) [junifer]
2026-10-07 20:15:48 [info ] antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpj4quasdv/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_ded19e1a-c28b-11f1-9c61-c662fa6c42433u3wmn2e/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpj4quasdv/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_ded19e1a-c28b-11f1-9c61-c662fa6c42433u3wmn2e/MNI152Lin_T1w.nii.gz -t /home/docker/junifer_data/v7/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpj4quasdv/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_ded19e1a-c28b-11f1-9c61-c662fa6c42433u3wmn2e/parcellation_warped.nii.gz [junifer]
2026-10-07 20:16:05 [info ] antsApplyTransforms command succeeded with the following output:
[junifer]
2026-10-07 20:16:09 [info ] Storing in <SQLiteFeatureStorage @ /tmp/tmpmkfobtvf/test.sqlite (multiple output)> [junifer]
2026-10-07 20:16:09 [info ] Fitting marker Schaefer200x17_Mean [junifer]
2026-10-07 20:16:09 [info ] Computing VBM_GM [junifer]
2026-10-07 20:16:09 [info ] Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution [junifer]
2026-10-07 20:16:09 [info ] Parcellation parameters: [junifer]
2026-10-07 20:16:09 [info ] resolution: None [junifer]
2026-10-07 20:16:09 [info ] n_rois: 200 [junifer]
2026-10-07 20:16:09 [info ] yeo_networks: 17 [junifer]
2026-10-07 20:16:09 [info ] Resolution set to None, using highest resolution. [junifer]
2026-10-07 20:16:10 [info ] Loading parcellation: /home/docker/junifer_data/v7/parcellations/Schaefer2018/Yeo2011/Schaefer2018_200Parcels_17Networks_order_FSLMNI152_1mm.nii.gz [junifer]
2026-10-07 20:16:16 [info ] Downloading template MNI152Lin (T1w in resolution 1) [junifer]
2026-10-07 20:16:17 [info ] antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpj4quasdv/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_effe868a-c28b-11f1-9c61-c662fa6c4243bzwyb643/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpj4quasdv/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_effe868a-c28b-11f1-9c61-c662fa6c4243bzwyb643/MNI152Lin_T1w.nii.gz -t /home/docker/junifer_data/v7/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpj4quasdv/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_effe868a-c28b-11f1-9c61-c662fa6c4243bzwyb643/parcellation_warped.nii.gz [junifer]
2026-10-07 20:16:42 [info ] antsApplyTransforms command succeeded with the following output:
[junifer]
2026-10-07 20:16:46 [info ] Storing in <SQLiteFeatureStorage @ /tmp/tmpmkfobtvf/test.sqlite (multiple output)> [junifer]
2026-10-07 20:16:46 [info ] Marker collection fitting done [junifer]
2026-10-07 20:16:46 [info ] Getting element sub-05 [junifer]
2026-10-07 20:16:46 [info ] Fitting pipeline [junifer]
2026-10-07 20:16:46 [info ] Reading VBM_GM from /home/docker/nilearn_data/oasis1/OAS1_0005_MR1/mwrc1OAS1_0005_MR1_mpr_anon_fslswapdim_bet.nii.gz [junifer]
2026-10-07 20:16:46 [info ] VBM_GM is of type NIFTI [junifer]
2026-10-07 20:16:46 [info ] Fitting marker Schaefer100x17_TrimMean80 [junifer]
2026-10-07 20:16:46 [info ] Computing VBM_GM [junifer]
2026-10-07 20:16:46 [info ] Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution [junifer]
2026-10-07 20:16:46 [info ] Parcellation parameters: [junifer]
2026-10-07 20:16:46 [info ] resolution: None [junifer]
2026-10-07 20:16:46 [info ] n_rois: 100 [junifer]
2026-10-07 20:16:46 [info ] yeo_networks: 17 [junifer]
2026-10-07 20:16:46 [info ] Resolution set to None, using highest resolution. [junifer]
2026-10-07 20:16:47 [info ] Loading parcellation: /home/docker/junifer_data/v7/parcellations/Schaefer2018/Yeo2011/Schaefer2018_100Parcels_17Networks_order_FSLMNI152_1mm.nii.gz [junifer]
2026-10-07 20:16:52 [info ] Downloading template MNI152Lin (T1w in resolution 1) [junifer]
2026-10-07 20:16:53 [info ] antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpgt3w8s6e/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_05d7e3f2-c28c-11f1-9c61-c662fa6c4243ihdhlkwl/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpgt3w8s6e/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_05d7e3f2-c28c-11f1-9c61-c662fa6c4243ihdhlkwl/MNI152Lin_T1w.nii.gz -t /home/docker/junifer_data/v7/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpgt3w8s6e/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_05d7e3f2-c28c-11f1-9c61-c662fa6c4243ihdhlkwl/parcellation_warped.nii.gz [junifer]
2026-10-07 20:17:12 [info ] antsApplyTransforms command succeeded with the following output:
[junifer]
2026-10-07 20:17:17 [info ] Storing in <SQLiteFeatureStorage @ /tmp/tmpmkfobtvf/test.sqlite (multiple output)> [junifer]
2026-10-07 20:17:17 [info ] Fitting marker Schaefer200x17_Mean [junifer]
2026-10-07 20:17:17 [info ] Computing VBM_GM [junifer]
2026-10-07 20:17:17 [info ] Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution [junifer]
2026-10-07 20:17:17 [info ] Parcellation parameters: [junifer]
2026-10-07 20:17:17 [info ] resolution: None [junifer]
2026-10-07 20:17:17 [info ] n_rois: 200 [junifer]
2026-10-07 20:17:17 [info ] yeo_networks: 17 [junifer]
2026-10-07 20:17:17 [info ] Resolution set to None, using highest resolution. [junifer]
2026-10-07 20:17:18 [info ] Loading parcellation: /home/docker/junifer_data/v7/parcellations/Schaefer2018/Yeo2011/Schaefer2018_200Parcels_17Networks_order_FSLMNI152_1mm.nii.gz [junifer]
2026-10-07 20:17:24 [info ] Downloading template MNI152Lin (T1w in resolution 1) [junifer]
2026-10-07 20:17:26 [info ] antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpgt3w8s6e/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_18998b8a-c28c-11f1-9c61-c662fa6c4243yinn8v3w/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpgt3w8s6e/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_18998b8a-c28c-11f1-9c61-c662fa6c4243yinn8v3w/MNI152Lin_T1w.nii.gz -t /home/docker/junifer_data/v7/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpgt3w8s6e/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_18998b8a-c28c-11f1-9c61-c662fa6c4243yinn8v3w/parcellation_warped.nii.gz [junifer]
2026-10-07 20:17:57 [info ] antsApplyTransforms command succeeded with the following output:
[junifer]
2026-10-07 20:18:01 [info ] Storing in <SQLiteFeatureStorage @ /tmp/tmpmkfobtvf/test.sqlite (multiple output)> [junifer]
2026-10-07 20:18:01 [info ] Marker collection fitting done [junifer]
2026-10-07 20:18:01 [info ] Getting element sub-06 [junifer]
2026-10-07 20:18:01 [info ] Fitting pipeline [junifer]
2026-10-07 20:18:01 [info ] Reading VBM_GM from /home/docker/nilearn_data/oasis1/OAS1_0006_MR1/mwrc1OAS1_0006_MR1_mpr_anon_fslswapdim_bet.nii.gz [junifer]
2026-10-07 20:18:01 [info ] VBM_GM is of type NIFTI [junifer]
2026-10-07 20:18:01 [info ] Fitting marker Schaefer100x17_TrimMean80 [junifer]
2026-10-07 20:18:01 [info ] Computing VBM_GM [junifer]
2026-10-07 20:18:01 [info ] Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution [junifer]
2026-10-07 20:18:01 [info ] Parcellation parameters: [junifer]
2026-10-07 20:18:01 [info ] resolution: None [junifer]
2026-10-07 20:18:01 [info ] n_rois: 100 [junifer]
2026-10-07 20:18:01 [info ] yeo_networks: 17 [junifer]
2026-10-07 20:18:01 [info ] Resolution set to None, using highest resolution. [junifer]
2026-10-07 20:18:01 [info ] Loading parcellation: /home/docker/junifer_data/v7/parcellations/Schaefer2018/Yeo2011/Schaefer2018_100Parcels_17Networks_order_FSLMNI152_1mm.nii.gz [junifer]
2026-10-07 20:18:08 [info ] Downloading template MNI152Lin (T1w in resolution 1) [junifer]
2026-10-07 20:18:09 [info ] antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpd02nlugn/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_3297d4d8-c28c-11f1-9c61-c662fa6c4243k9k5786w/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpd02nlugn/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_3297d4d8-c28c-11f1-9c61-c662fa6c4243k9k5786w/MNI152Lin_T1w.nii.gz -t /home/docker/junifer_data/v7/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpd02nlugn/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_3297d4d8-c28c-11f1-9c61-c662fa6c4243k9k5786w/parcellation_warped.nii.gz [junifer]
2026-10-07 20:18:26 [info ] antsApplyTransforms command succeeded with the following output:
[junifer]
2026-10-07 20:18:31 [info ] Storing in <SQLiteFeatureStorage @ /tmp/tmpmkfobtvf/test.sqlite (multiple output)> [junifer]
2026-10-07 20:18:31 [info ] Fitting marker Schaefer200x17_Mean [junifer]
2026-10-07 20:18:31 [info ] Computing VBM_GM [junifer]
2026-10-07 20:18:31 [info ] Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution [junifer]
2026-10-07 20:18:31 [info ] Parcellation parameters: [junifer]
2026-10-07 20:18:31 [info ] resolution: None [junifer]
2026-10-07 20:18:31 [info ] n_rois: 200 [junifer]
2026-10-07 20:18:31 [info ] yeo_networks: 17 [junifer]
2026-10-07 20:18:31 [info ] Resolution set to None, using highest resolution. [junifer]
2026-10-07 20:18:32 [info ] Loading parcellation: /home/docker/junifer_data/v7/parcellations/Schaefer2018/Yeo2011/Schaefer2018_200Parcels_17Networks_order_FSLMNI152_1mm.nii.gz [junifer]
2026-10-07 20:18:37 [info ] Downloading template MNI152Lin (T1w in resolution 1) [junifer]
2026-10-07 20:18:38 [info ] antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpd02nlugn/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_44789f02-c28c-11f1-9c61-c662fa6c4243_zj1rm35/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpd02nlugn/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_44789f02-c28c-11f1-9c61-c662fa6c4243_zj1rm35/MNI152Lin_T1w.nii.gz -t /home/docker/junifer_data/v7/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpd02nlugn/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_44789f02-c28c-11f1-9c61-c662fa6c4243_zj1rm35/parcellation_warped.nii.gz [junifer]
2026-10-07 20:19:06 [info ] antsApplyTransforms command succeeded with the following output:
[junifer]
2026-10-07 20:19:10 [info ] Storing in <SQLiteFeatureStorage @ /tmp/tmpmkfobtvf/test.sqlite (multiple output)> [junifer]
2026-10-07 20:19:10 [info ] Marker collection fitting done [junifer]
2026-10-07 20:19:10 [info ] Getting element sub-07 [junifer]
2026-10-07 20:19:10 [info ] Fitting pipeline [junifer]
2026-10-07 20:19:10 [info ] Reading VBM_GM from /home/docker/nilearn_data/oasis1/OAS1_0007_MR1/mwrc1OAS1_0007_MR1_mpr_anon_fslswapdim_bet.nii.gz [junifer]
2026-10-07 20:19:10 [info ] VBM_GM is of type NIFTI [junifer]
2026-10-07 20:19:10 [info ] Fitting marker Schaefer100x17_TrimMean80 [junifer]
2026-10-07 20:19:10 [info ] Computing VBM_GM [junifer]
2026-10-07 20:19:10 [info ] Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution [junifer]
2026-10-07 20:19:10 [info ] Parcellation parameters: [junifer]
2026-10-07 20:19:10 [info ] resolution: None [junifer]
2026-10-07 20:19:10 [info ] n_rois: 100 [junifer]
2026-10-07 20:19:10 [info ] yeo_networks: 17 [junifer]
2026-10-07 20:19:10 [info ] Resolution set to None, using highest resolution. [junifer]
2026-10-07 20:19:11 [info ] Loading parcellation: /home/docker/junifer_data/v7/parcellations/Schaefer2018/Yeo2011/Schaefer2018_100Parcels_17Networks_order_FSLMNI152_1mm.nii.gz [junifer]
2026-10-07 20:19:17 [info ] Downloading template MNI152Lin (T1w in resolution 1) [junifer]
2026-10-07 20:19:18 [info ] antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp_nxhsmr9/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_5bc6dfde-c28c-11f1-9c61-c662fa6c4243r4t74g3z/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp_nxhsmr9/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_5bc6dfde-c28c-11f1-9c61-c662fa6c4243r4t74g3z/MNI152Lin_T1w.nii.gz -t /home/docker/junifer_data/v7/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmp_nxhsmr9/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_5bc6dfde-c28c-11f1-9c61-c662fa6c4243r4t74g3z/parcellation_warped.nii.gz [junifer]
2026-10-07 20:19:35 [info ] antsApplyTransforms command succeeded with the following output:
[junifer]
2026-10-07 20:19:39 [info ] Storing in <SQLiteFeatureStorage @ /tmp/tmpmkfobtvf/test.sqlite (multiple output)> [junifer]
2026-10-07 20:19:40 [info ] Fitting marker Schaefer200x17_Mean [junifer]
2026-10-07 20:19:40 [info ] Computing VBM_GM [junifer]
2026-10-07 20:19:40 [info ] Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution [junifer]
2026-10-07 20:19:40 [info ] Parcellation parameters: [junifer]
2026-10-07 20:19:40 [info ] resolution: None [junifer]
2026-10-07 20:19:40 [info ] n_rois: 200 [junifer]
2026-10-07 20:19:40 [info ] yeo_networks: 17 [junifer]
2026-10-07 20:19:40 [info ] Resolution set to None, using highest resolution. [junifer]
2026-10-07 20:19:40 [info ] Loading parcellation: /home/docker/junifer_data/v7/parcellations/Schaefer2018/Yeo2011/Schaefer2018_200Parcels_17Networks_order_FSLMNI152_1mm.nii.gz [junifer]
2026-10-07 20:19:46 [info ] Downloading template MNI152Lin (T1w in resolution 1) [junifer]
2026-10-07 20:19:47 [info ] antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp_nxhsmr9/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_6d35724e-c28c-11f1-9c61-c662fa6c42430qyngyhb/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp_nxhsmr9/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_6d35724e-c28c-11f1-9c61-c662fa6c42430qyngyhb/MNI152Lin_T1w.nii.gz -t /home/docker/junifer_data/v7/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmp_nxhsmr9/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_6d35724e-c28c-11f1-9c61-c662fa6c42430qyngyhb/parcellation_warped.nii.gz [junifer]
2026-10-07 20:20:22 [info ] antsApplyTransforms command succeeded with the following output:
[junifer]
2026-10-07 20:20:26 [info ] Storing in <SQLiteFeatureStorage @ /tmp/tmpmkfobtvf/test.sqlite (multiple output)> [junifer]
2026-10-07 20:20:27 [info ] Marker collection fitting done [junifer]
2026-10-07 20:20:27 [info ] Getting element sub-08 [junifer]
2026-10-07 20:20:27 [info ] Fitting pipeline [junifer]
2026-10-07 20:20:27 [info ] Reading VBM_GM from /home/docker/nilearn_data/oasis1/OAS1_0009_MR1/mwrc1OAS1_0009_MR1_mpr_anon_fslswapdim_bet.nii.gz [junifer]
2026-10-07 20:20:27 [info ] VBM_GM is of type NIFTI [junifer]
2026-10-07 20:20:27 [info ] Fitting marker Schaefer100x17_TrimMean80 [junifer]
2026-10-07 20:20:27 [info ] Computing VBM_GM [junifer]
2026-10-07 20:20:27 [info ] Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution [junifer]
2026-10-07 20:20:27 [info ] Parcellation parameters: [junifer]
2026-10-07 20:20:27 [info ] resolution: None [junifer]
2026-10-07 20:20:27 [info ] n_rois: 100 [junifer]
2026-10-07 20:20:27 [info ] yeo_networks: 17 [junifer]
2026-10-07 20:20:27 [info ] Resolution set to None, using highest resolution. [junifer]
2026-10-07 20:20:27 [info ] Loading parcellation: /home/docker/junifer_data/v7/parcellations/Schaefer2018/Yeo2011/Schaefer2018_100Parcels_17Networks_order_FSLMNI152_1mm.nii.gz [junifer]
2026-10-07 20:20:34 [info ] Downloading template MNI152Lin (T1w in resolution 1) [junifer]
2026-10-07 20:20:35 [info ] antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpiix_m5ne/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_8987415c-c28c-11f1-9c61-c662fa6c4243shzp3lc1/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpiix_m5ne/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_8987415c-c28c-11f1-9c61-c662fa6c4243shzp3lc1/MNI152Lin_T1w.nii.gz -t /home/docker/junifer_data/v7/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpiix_m5ne/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_8987415c-c28c-11f1-9c61-c662fa6c4243shzp3lc1/parcellation_warped.nii.gz [junifer]
2026-10-07 20:20:52 [info ] antsApplyTransforms command succeeded with the following output:
[junifer]
2026-10-07 20:20:56 [info ] Storing in <SQLiteFeatureStorage @ /tmp/tmpmkfobtvf/test.sqlite (multiple output)> [junifer]
2026-10-07 20:20:56 [info ] Fitting marker Schaefer200x17_Mean [junifer]
2026-10-07 20:20:56 [info ] Computing VBM_GM [junifer]
2026-10-07 20:20:56 [info ] Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution [junifer]
2026-10-07 20:20:56 [info ] Parcellation parameters: [junifer]
2026-10-07 20:20:56 [info ] resolution: None [junifer]
2026-10-07 20:20:56 [info ] n_rois: 200 [junifer]
2026-10-07 20:20:56 [info ] yeo_networks: 17 [junifer]
2026-10-07 20:20:56 [info ] Resolution set to None, using highest resolution. [junifer]
2026-10-07 20:20:56 [info ] Loading parcellation: /home/docker/junifer_data/v7/parcellations/Schaefer2018/Yeo2011/Schaefer2018_200Parcels_17Networks_order_FSLMNI152_1mm.nii.gz [junifer]
2026-10-07 20:21:02 [info ] Downloading template MNI152Lin (T1w in resolution 1) [junifer]
2026-10-07 20:21:03 [info ] antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpiix_m5ne/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_9aaf5dd4-c28c-11f1-9c61-c662fa6c4243y__3qibb/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpiix_m5ne/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_9aaf5dd4-c28c-11f1-9c61-c662fa6c4243y__3qibb/MNI152Lin_T1w.nii.gz -t /home/docker/junifer_data/v7/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpiix_m5ne/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_9aaf5dd4-c28c-11f1-9c61-c662fa6c4243y__3qibb/parcellation_warped.nii.gz [junifer]
2026-10-07 20:21:33 [info ] antsApplyTransforms command succeeded with the following output:
[junifer]
2026-10-07 20:21:38 [info ] Storing in <SQLiteFeatureStorage @ /tmp/tmpmkfobtvf/test.sqlite (multiple output)> [junifer]
2026-10-07 20:21:38 [info ] Marker collection fitting done [junifer]
2026-10-07 20:21:38 [info ] Getting element sub-09 [junifer]
2026-10-07 20:21:38 [info ] Fitting pipeline [junifer]
2026-10-07 20:21:38 [info ] Reading VBM_GM from /home/docker/nilearn_data/oasis1/OAS1_0010_MR1/mwrc1OAS1_0010_MR1_mpr_anon_fslswapdim_bet.nii.gz [junifer]
2026-10-07 20:21:38 [info ] VBM_GM is of type NIFTI [junifer]
2026-10-07 20:21:38 [info ] Fitting marker Schaefer100x17_TrimMean80 [junifer]
2026-10-07 20:21:38 [info ] Computing VBM_GM [junifer]
2026-10-07 20:21:38 [info ] Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution [junifer]
2026-10-07 20:21:38 [info ] Parcellation parameters: [junifer]
2026-10-07 20:21:38 [info ] resolution: None [junifer]
2026-10-07 20:21:38 [info ] n_rois: 100 [junifer]
2026-10-07 20:21:38 [info ] yeo_networks: 17 [junifer]
2026-10-07 20:21:38 [info ] Resolution set to None, using highest resolution. [junifer]
2026-10-07 20:21:39 [info ] Loading parcellation: /home/docker/junifer_data/v7/parcellations/Schaefer2018/Yeo2011/Schaefer2018_100Parcels_17Networks_order_FSLMNI152_1mm.nii.gz [junifer]
2026-10-07 20:21:45 [info ] Downloading template MNI152Lin (T1w in resolution 1) [junifer]
2026-10-07 20:21:46 [info ] antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmppkcvudny/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_b41c0de4-c28c-11f1-9c61-c662fa6c42430_atphgi/prewarp_parcellation.nii.gz -r /tmp/junifer/tmppkcvudny/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_b41c0de4-c28c-11f1-9c61-c662fa6c42430_atphgi/MNI152Lin_T1w.nii.gz -t /home/docker/junifer_data/v7/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmppkcvudny/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_b41c0de4-c28c-11f1-9c61-c662fa6c42430_atphgi/parcellation_warped.nii.gz [junifer]
2026-10-07 20:22:04 [info ] antsApplyTransforms command succeeded with the following output:
[junifer]
2026-10-07 20:22:09 [info ] Storing in <SQLiteFeatureStorage @ /tmp/tmpmkfobtvf/test.sqlite (multiple output)> [junifer]
2026-10-07 20:22:09 [info ] Fitting marker Schaefer200x17_Mean [junifer]
2026-10-07 20:22:09 [info ] Computing VBM_GM [junifer]
2026-10-07 20:22:09 [info ] Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution [junifer]
2026-10-07 20:22:09 [info ] Parcellation parameters: [junifer]
2026-10-07 20:22:09 [info ] resolution: None [junifer]
2026-10-07 20:22:09 [info ] n_rois: 200 [junifer]
2026-10-07 20:22:09 [info ] yeo_networks: 17 [junifer]
2026-10-07 20:22:09 [info ] Resolution set to None, using highest resolution. [junifer]
2026-10-07 20:22:10 [info ] Loading parcellation: /home/docker/junifer_data/v7/parcellations/Schaefer2018/Yeo2011/Schaefer2018_200Parcels_17Networks_order_FSLMNI152_1mm.nii.gz [junifer]
2026-10-07 20:22:17 [info ] Downloading template MNI152Lin (T1w in resolution 1) [junifer]
2026-10-07 20:22:18 [info ] antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmppkcvudny/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_c67c9846-c28c-11f1-9c61-c662fa6c4243zot1f_g1/prewarp_parcellation.nii.gz -r /tmp/junifer/tmppkcvudny/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_c67c9846-c28c-11f1-9c61-c662fa6c4243zot1f_g1/MNI152Lin_T1w.nii.gz -t /home/docker/junifer_data/v7/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmppkcvudny/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_c67c9846-c28c-11f1-9c61-c662fa6c4243zot1f_g1/parcellation_warped.nii.gz [junifer]
2026-10-07 20:22:45 [info ] antsApplyTransforms command succeeded with the following output:
[junifer]
2026-10-07 20:22:48 [info ] Storing in <SQLiteFeatureStorage @ /tmp/tmpmkfobtvf/test.sqlite (multiple output)> [junifer]
2026-10-07 20:22:48 [info ] Marker collection fitting done [junifer]
2026-10-07 20:22:48 [info ] Getting element sub-10 [junifer]
2026-10-07 20:22:48 [info ] Fitting pipeline [junifer]
2026-10-07 20:22:48 [info ] Reading VBM_GM from /home/docker/nilearn_data/oasis1/OAS1_0011_MR1/mwrc1OAS1_0011_MR1_mpr_anon_fslswapdim_bet.nii.gz [junifer]
2026-10-07 20:22:48 [info ] VBM_GM is of type NIFTI [junifer]
2026-10-07 20:22:48 [info ] Fitting marker Schaefer100x17_TrimMean80 [junifer]
2026-10-07 20:22:48 [info ] Computing VBM_GM [junifer]
2026-10-07 20:22:48 [info ] Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution [junifer]
2026-10-07 20:22:48 [info ] Parcellation parameters: [junifer]
2026-10-07 20:22:48 [info ] resolution: None [junifer]
2026-10-07 20:22:48 [info ] n_rois: 100 [junifer]
2026-10-07 20:22:48 [info ] yeo_networks: 17 [junifer]
2026-10-07 20:22:48 [info ] Resolution set to None, using highest resolution. [junifer]
2026-10-07 20:22:48 [info ] Loading parcellation: /home/docker/junifer_data/v7/parcellations/Schaefer2018/Yeo2011/Schaefer2018_100Parcels_17Networks_order_FSLMNI152_1mm.nii.gz [junifer]
2026-10-07 20:22:54 [info ] Downloading template MNI152Lin (T1w in resolution 1) [junifer]
2026-10-07 20:22:54 [info ] antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp7k1sibep/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_dd8ffffa-c28c-11f1-9c61-c662fa6c424383lmd_zt/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp7k1sibep/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_dd8ffffa-c28c-11f1-9c61-c662fa6c424383lmd_zt/MNI152Lin_T1w.nii.gz -t /home/docker/junifer_data/v7/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmp7k1sibep/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_dd8ffffa-c28c-11f1-9c61-c662fa6c424383lmd_zt/parcellation_warped.nii.gz [junifer]
2026-10-07 20:23:10 [info ] antsApplyTransforms command succeeded with the following output:
[junifer]
2026-10-07 20:23:14 [info ] Storing in <SQLiteFeatureStorage @ /tmp/tmpmkfobtvf/test.sqlite (multiple output)> [junifer]
2026-10-07 20:23:14 [info ] Fitting marker Schaefer200x17_Mean [junifer]
2026-10-07 20:23:14 [info ] Computing VBM_GM [junifer]
2026-10-07 20:23:14 [info ] Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution [junifer]
2026-10-07 20:23:14 [info ] Parcellation parameters: [junifer]
2026-10-07 20:23:14 [info ] resolution: None [junifer]
2026-10-07 20:23:14 [info ] n_rois: 200 [junifer]
2026-10-07 20:23:14 [info ] yeo_networks: 17 [junifer]
2026-10-07 20:23:14 [info ] Resolution set to None, using highest resolution. [junifer]
2026-10-07 20:23:14 [info ] Loading parcellation: /home/docker/junifer_data/v7/parcellations/Schaefer2018/Yeo2011/Schaefer2018_200Parcels_17Networks_order_FSLMNI152_1mm.nii.gz [junifer]
2026-10-07 20:23:20 [info ] Downloading template MNI152Lin (T1w in resolution 1) [junifer]
2026-10-07 20:23:21 [info ] antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp7k1sibep/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_ed1935fe-c28c-11f1-9c61-c662fa6c4243d9au0jzz/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp7k1sibep/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_ed1935fe-c28c-11f1-9c61-c662fa6c4243d9au0jzz/MNI152Lin_T1w.nii.gz -t /home/docker/junifer_data/v7/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmp7k1sibep/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_ed1935fe-c28c-11f1-9c61-c662fa6c4243d9au0jzz/parcellation_warped.nii.gz [junifer]
2026-10-07 20:23:46 [info ] antsApplyTransforms command succeeded with the following output:
[junifer]
2026-10-07 20:23:50 [info ] Storing in <SQLiteFeatureStorage @ /tmp/tmpmkfobtvf/test.sqlite (multiple output)> [junifer]
2026-10-07 20:23:50 [info ] Marker collection fitting done [junifer]
2026-10-07 20:23:50 [info ] Collecting data using SQLiteFeatureStorage [junifer]
2026-10-07 20:23:50 [info ] Collecting data from /tmp/tmpmkfobtvf/*test.sqlite [junifer]
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2026-10-07 20:23:54 [info ] Collect done [junifer]
Using julearn for machine learning: We predict the age given our vbm features and sex as a confound.
X = list(df_vbm.columns)
df_vbm[y] = age
df_vbm[confound] = sex
X_types = {
"features": X,
"confound": confound,
}
creator = PipelineCreator(problem_type="regression", apply_to="features")
creator.add("zscore", apply_to=["features", "confound"])
creator.add("confound_removal", apply_to="features", confounds="confound")
creator.add("ridge")
scores = run_cross_validation(
X=X + [confound],
y=y,
X_types=X_types,
data=df_vbm,
model=creator,
cv=3,
)
print(scores)
2026-10-07 20:23:54 [info ] Adding step zscore that applies to ColumnTypes<types={'confound', 'features'}; pattern=(?:__:type:__confound|__:type:__features)> [julearn]
2026-10-07 20:23:54 [info ] Step added [julearn]
2026-10-07 20:23:54 [info ] Adding step confound_removal that applies to ColumnTypes<types={'features'}; pattern=(?:__:type:__features)> [julearn]
2026-10-07 20:23:54 [info ] Setting hyperparameter confounds = confound [julearn]
2026-10-07 20:23:54 [info ] Step added [julearn]
2026-10-07 20:23:54 [info ] Adding step ridge that applies to ColumnTypes<types={'features'}; pattern=(?:__:type:__features)> [julearn]
2026-10-07 20:23:54 [info ] Step added [julearn]
2026-10-07 20:23:54 [info ] ==== Input Data ==== [julearn]
2026-10-07 20:23:54 [info ] Using dataframe as input [julearn]
2026-10-07 20:23:54 [info ] Features: ['LH_VisCent_ExStr_1', 'LH_VisCent_ExStr_2', 'LH_VisCent_Striate_1', 'LH_VisCent_ExStr_3', 'LH_VisCent_ExStr_4', 'LH_VisCent_ExStr_5', 'LH_VisPeri_ExStrInf_1', 'LH_VisPeri_ExStrInf_2', 'LH_VisPeri_ExStrInf_3', 'LH_VisPeri_StriCal_1', 'LH_VisPeri_ExStrSup_1', 'LH_VisPeri_ExStrSup_2', 'LH_SomMotA_1', 'LH_SomMotA_2', 'LH_SomMotA_3', 'LH_SomMotA_4', 'LH_SomMotA_5', 'LH_SomMotA_6', 'LH_SomMotA_7', 'LH_SomMotA_8', 'LH_SomMotB_Aud_1', 'LH_SomMotB_Aud_2', 'LH_SomMotB_S2_1', 'LH_SomMotB_S2_2', 'LH_SomMotB_Aud_3', 'LH_SomMotB_S2_3', 'LH_SomMotB_Cent_1', 'LH_SomMotB_Cent_2', 'LH_DorsAttnA_TempOcc_1', 'LH_DorsAttnA_TempOcc_2', 'LH_DorsAttnA_ParOcc_1', 'LH_DorsAttnA_SPL_1', 'LH_DorsAttnA_SPL_2', 'LH_DorsAttnA_SPL_3', 'LH_DorsAttnB_PostC_1', 'LH_DorsAttnB_PostC_2', 'LH_DorsAttnB_PostC_3', 'LH_DorsAttnB_PostC_4', 'LH_DorsAttnB_FEF_1', 'LH_SalVentAttnA_ParOper_1', 'LH_SalVentAttnA_Ins_1', 'LH_SalVentAttnA_FrOper_1', 'LH_SalVentAttnA_FrOper_2', 'LH_SalVentAttnA_ParMed_1', 'LH_SalVentAttnA_FrMed_1', 'LH_SalVentAttnA_FrMed_2', 'LH_SalVentAttnB_IPL_1', 'LH_SalVentAttnB_PFCl_1', 'LH_SalVentAttnB_Ins_1', 'LH_SalVentAttnB_PFCmp_1', 'LH_LimbicB_OFC_1', 'LH_LimbicB_OFC_2', 'LH_LimbicA_TempPole_1', 'LH_LimbicA_TempPole_2', 'LH_LimbicA_TempPole_3', 'LH_LimbicA_TempPole_4', 'LH_ContA_Temp_1', 'LH_ContA_IPS_1', 'LH_ContA_IPS_2', 'LH_ContA_IPS_3', 'LH_ContA_PFCd_1', 'LH_ContA_PFClv_1', 'LH_ContA_PFCl_1', 'LH_ContA_PFCl_2', 'LH_ContA_PFCl_3', 'LH_ContA_Cingm_1', 'LH_ContB_Temp_1', 'LH_ContB_IPL_1', 'LH_ContB_PFCl_1', 'LH_ContB_PFClv_1', 'LH_ContB_PFClv_2', 'LH_ContC_pCun_1', 'LH_ContC_pCun_2', 'LH_ContC_Cingp_1', 'LH_DefaultA_IPL_1', 'LH_DefaultA_PFCd_1', 'LH_DefaultA_pCunPCC_1', 'LH_DefaultA_pCunPCC_2', 'LH_DefaultA_pCunPCC_3', 'LH_DefaultA_PFCm_1', 'LH_DefaultA_PFCm_2', 'LH_DefaultA_PFCm_3', 'LH_DefaultB_Temp_1', 'LH_DefaultB_Temp_2', 'LH_DefaultB_Temp_3', 'LH_DefaultB_Temp_4', 'LH_DefaultB_IPL_1', 'LH_DefaultB_PFCd_1', 'LH_DefaultB_PFCd_2', 'LH_DefaultB_PFCd_3', 'LH_DefaultB_PFCd_4', 'LH_DefaultB_PFCv_1', 'LH_DefaultB_PFCv_2', 'LH_DefaultB_PFCv_3', 'LH_DefaultB_PFCv_4', 'LH_DefaultC_IPL_1', 'LH_DefaultC_Rsp_1', 'LH_DefaultC_PHC_1', 'LH_TempPar_1', 'LH_TempPar_2', 'RH_VisCent_ExStr_1', 'RH_VisCent_ExStr_2', 'RH_VisCent_Striate_1', 'RH_VisCent_ExStr_3', 'RH_VisCent_ExStr_4', 'RH_VisCent_ExStr_5', 'RH_VisPeri_ExStrInf_1', 'RH_VisPeri_ExStrInf_2', 'RH_VisPeri_StriCal_1', 'RH_VisPeri_ExStrSup_1', 'RH_VisPeri_ExStrSup_2', 'RH_VisPeri_ExStrSup_3', 'RH_SomMotA_1', 'RH_SomMotA_2', 'RH_SomMotA_3', 'RH_SomMotA_4', 'RH_SomMotA_5', 'RH_SomMotA_6', 'RH_SomMotA_7', 'RH_SomMotA_8', 'RH_SomMotA_9', 'RH_SomMotA_10', 'RH_SomMotA_11', 'RH_SomMotB_Aud_1', 'RH_SomMotB_Aud_2', 'RH_SomMotB_S2_1', 'RH_SomMotB_S2_2', 'RH_SomMotB_S2_3', 'RH_SomMotB_S2_4', 'RH_SomMotB_Cent_1', 'RH_DorsAttnA_TempOcc_1', 'RH_DorsAttnA_ParOcc_1', 'RH_DorsAttnA_SPL_1', 'RH_DorsAttnA_SPL_2', 'RH_DorsAttnA_SPL_3', 'RH_DorsAttnA_SPL_4', 'RH_DorsAttnB_PostC_1', 'RH_DorsAttnB_PostC_2', 'RH_DorsAttnB_PostC_3', 'RH_DorsAttnB_PostC_4', 'RH_DorsAttnB_FEF_1', 'RH_SalVentAttnA_ParOper_1', 'RH_SalVentAttnA_PrC_1', 'RH_SalVentAttnA_Ins_1', 'RH_SalVentAttnA_Ins_2', 'RH_SalVentAttnA_FrOper_1', 'RH_SalVentAttnA_FrMed_1', 'RH_SalVentAttnA_ParMed_1', 'RH_SalVentAttnA_ParMed_2', 'RH_SalVentAttnA_FrMed_2', 'RH_SalVentAttnB_IPL_1', 'RH_SalVentAttnB_PFClv_1', 'RH_SalVentAttnB_PFCl_1', 'RH_SalVentAttnB_Ins_1', 'RH_SalVentAttnB_Ins_2', 'RH_SalVentAttnB_PFCmp_1', 'RH_LimbicB_OFC_1', 'RH_LimbicB_OFC_2', 'RH_LimbicB_OFC_3', 'RH_LimbicB_OFC_4', 'RH_LimbicA_TempPole_1', 'RH_LimbicA_TempPole_2', 'RH_LimbicA_TempPole_3', 'RH_LimbicA_TempPole_4', 'RH_ContA_IPS_1', 'RH_ContA_IPS_2', 'RH_ContA_PFCd_1', 'RH_ContA_PFCl_1', 'RH_ContA_PFCl_2', 'RH_ContA_Cingm_1', 'RH_ContB_Temp_1', 'RH_ContB_Temp_2', 'RH_ContB_IPL_1', 'RH_ContB_IPL_2', 'RH_ContB_PFCld_1', 'RH_ContB_PFCld_2', 'RH_ContB_PFClv_1', 'RH_ContB_PFClv_2', 'RH_ContB_PFCmp_1', 'RH_ContB_PFCld_3', 'RH_ContC_pCun_1', 'RH_ContC_pCun_2', 'RH_ContC_Cingp_1', 'RH_DefaultA_IPL_1', 'RH_DefaultA_PFCd_1', 'RH_DefaultA_pCunPCC_1', 'RH_DefaultA_PFCm_1', 'RH_DefaultA_PFCm_2', 'RH_DefaultA_PFCm_3', 'RH_DefaultB_Temp_1', 'RH_DefaultB_AntTemp_1', 'RH_DefaultB_PFCd_1', 'RH_DefaultB_PFCv_1', 'RH_DefaultC_IPL_1', 'RH_DefaultC_Rsp_1', 'RH_DefaultC_PHC_1', 'RH_TempPar_1', 'RH_TempPar_2', 'RH_TempPar_3', 'RH_TempPar_4', 'sex'] [julearn]
2026-10-07 20:23:54 [info ] Target: age [julearn]
2026-10-07 20:23:54 [info ] Expanded features: ['LH_VisCent_ExStr_1', 'LH_VisCent_ExStr_2', 'LH_VisCent_Striate_1', 'LH_VisCent_ExStr_3', 'LH_VisCent_ExStr_4', 'LH_VisCent_ExStr_5', 'LH_VisPeri_ExStrInf_1', 'LH_VisPeri_ExStrInf_2', 'LH_VisPeri_ExStrInf_3', 'LH_VisPeri_StriCal_1', 'LH_VisPeri_ExStrSup_1', 'LH_VisPeri_ExStrSup_2', 'LH_SomMotA_1', 'LH_SomMotA_2', 'LH_SomMotA_3', 'LH_SomMotA_4', 'LH_SomMotA_5', 'LH_SomMotA_6', 'LH_SomMotA_7', 'LH_SomMotA_8', 'LH_SomMotB_Aud_1', 'LH_SomMotB_Aud_2', 'LH_SomMotB_S2_1', 'LH_SomMotB_S2_2', 'LH_SomMotB_Aud_3', 'LH_SomMotB_S2_3', 'LH_SomMotB_Cent_1', 'LH_SomMotB_Cent_2', 'LH_DorsAttnA_TempOcc_1', 'LH_DorsAttnA_TempOcc_2', 'LH_DorsAttnA_ParOcc_1', 'LH_DorsAttnA_SPL_1', 'LH_DorsAttnA_SPL_2', 'LH_DorsAttnA_SPL_3', 'LH_DorsAttnB_PostC_1', 'LH_DorsAttnB_PostC_2', 'LH_DorsAttnB_PostC_3', 'LH_DorsAttnB_PostC_4', 'LH_DorsAttnB_FEF_1', 'LH_SalVentAttnA_ParOper_1', 'LH_SalVentAttnA_Ins_1', 'LH_SalVentAttnA_FrOper_1', 'LH_SalVentAttnA_FrOper_2', 'LH_SalVentAttnA_ParMed_1', 'LH_SalVentAttnA_FrMed_1', 'LH_SalVentAttnA_FrMed_2', 'LH_SalVentAttnB_IPL_1', 'LH_SalVentAttnB_PFCl_1', 'LH_SalVentAttnB_Ins_1', 'LH_SalVentAttnB_PFCmp_1', 'LH_LimbicB_OFC_1', 'LH_LimbicB_OFC_2', 'LH_LimbicA_TempPole_1', 'LH_LimbicA_TempPole_2', 'LH_LimbicA_TempPole_3', 'LH_LimbicA_TempPole_4', 'LH_ContA_Temp_1', 'LH_ContA_IPS_1', 'LH_ContA_IPS_2', 'LH_ContA_IPS_3', 'LH_ContA_PFCd_1', 'LH_ContA_PFClv_1', 'LH_ContA_PFCl_1', 'LH_ContA_PFCl_2', 'LH_ContA_PFCl_3', 'LH_ContA_Cingm_1', 'LH_ContB_Temp_1', 'LH_ContB_IPL_1', 'LH_ContB_PFCl_1', 'LH_ContB_PFClv_1', 'LH_ContB_PFClv_2', 'LH_ContC_pCun_1', 'LH_ContC_pCun_2', 'LH_ContC_Cingp_1', 'LH_DefaultA_IPL_1', 'LH_DefaultA_PFCd_1', 'LH_DefaultA_pCunPCC_1', 'LH_DefaultA_pCunPCC_2', 'LH_DefaultA_pCunPCC_3', 'LH_DefaultA_PFCm_1', 'LH_DefaultA_PFCm_2', 'LH_DefaultA_PFCm_3', 'LH_DefaultB_Temp_1', 'LH_DefaultB_Temp_2', 'LH_DefaultB_Temp_3', 'LH_DefaultB_Temp_4', 'LH_DefaultB_IPL_1', 'LH_DefaultB_PFCd_1', 'LH_DefaultB_PFCd_2', 'LH_DefaultB_PFCd_3', 'LH_DefaultB_PFCd_4', 'LH_DefaultB_PFCv_1', 'LH_DefaultB_PFCv_2', 'LH_DefaultB_PFCv_3', 'LH_DefaultB_PFCv_4', 'LH_DefaultC_IPL_1', 'LH_DefaultC_Rsp_1', 'LH_DefaultC_PHC_1', 'LH_TempPar_1', 'LH_TempPar_2', 'RH_VisCent_ExStr_1', 'RH_VisCent_ExStr_2', 'RH_VisCent_Striate_1', 'RH_VisCent_ExStr_3', 'RH_VisCent_ExStr_4', 'RH_VisCent_ExStr_5', 'RH_VisPeri_ExStrInf_1', 'RH_VisPeri_ExStrInf_2', 'RH_VisPeri_StriCal_1', 'RH_VisPeri_ExStrSup_1', 'RH_VisPeri_ExStrSup_2', 'RH_VisPeri_ExStrSup_3', 'RH_SomMotA_1', 'RH_SomMotA_2', 'RH_SomMotA_3', 'RH_SomMotA_4', 'RH_SomMotA_5', 'RH_SomMotA_6', 'RH_SomMotA_7', 'RH_SomMotA_8', 'RH_SomMotA_9', 'RH_SomMotA_10', 'RH_SomMotA_11', 'RH_SomMotB_Aud_1', 'RH_SomMotB_Aud_2', 'RH_SomMotB_S2_1', 'RH_SomMotB_S2_2', 'RH_SomMotB_S2_3', 'RH_SomMotB_S2_4', 'RH_SomMotB_Cent_1', 'RH_DorsAttnA_TempOcc_1', 'RH_DorsAttnA_ParOcc_1', 'RH_DorsAttnA_SPL_1', 'RH_DorsAttnA_SPL_2', 'RH_DorsAttnA_SPL_3', 'RH_DorsAttnA_SPL_4', 'RH_DorsAttnB_PostC_1', 'RH_DorsAttnB_PostC_2', 'RH_DorsAttnB_PostC_3', 'RH_DorsAttnB_PostC_4', 'RH_DorsAttnB_FEF_1', 'RH_SalVentAttnA_ParOper_1', 'RH_SalVentAttnA_PrC_1', 'RH_SalVentAttnA_Ins_1', 'RH_SalVentAttnA_Ins_2', 'RH_SalVentAttnA_FrOper_1', 'RH_SalVentAttnA_FrMed_1', 'RH_SalVentAttnA_ParMed_1', 'RH_SalVentAttnA_ParMed_2', 'RH_SalVentAttnA_FrMed_2', 'RH_SalVentAttnB_IPL_1', 'RH_SalVentAttnB_PFClv_1', 'RH_SalVentAttnB_PFCl_1', 'RH_SalVentAttnB_Ins_1', 'RH_SalVentAttnB_Ins_2', 'RH_SalVentAttnB_PFCmp_1', 'RH_LimbicB_OFC_1', 'RH_LimbicB_OFC_2', 'RH_LimbicB_OFC_3', 'RH_LimbicB_OFC_4', 'RH_LimbicA_TempPole_1', 'RH_LimbicA_TempPole_2', 'RH_LimbicA_TempPole_3', 'RH_LimbicA_TempPole_4', 'RH_ContA_IPS_1', 'RH_ContA_IPS_2', 'RH_ContA_PFCd_1', 'RH_ContA_PFCl_1', 'RH_ContA_PFCl_2', 'RH_ContA_Cingm_1', 'RH_ContB_Temp_1', 'RH_ContB_Temp_2', 'RH_ContB_IPL_1', 'RH_ContB_IPL_2', 'RH_ContB_PFCld_1', 'RH_ContB_PFCld_2', 'RH_ContB_PFClv_1', 'RH_ContB_PFClv_2', 'RH_ContB_PFCmp_1', 'RH_ContB_PFCld_3', 'RH_ContC_pCun_1', 'RH_ContC_pCun_2', 'RH_ContC_Cingp_1', 'RH_DefaultA_IPL_1', 'RH_DefaultA_PFCd_1', 'RH_DefaultA_pCunPCC_1', 'RH_DefaultA_PFCm_1', 'RH_DefaultA_PFCm_2', 'RH_DefaultA_PFCm_3', 'RH_DefaultB_Temp_1', 'RH_DefaultB_AntTemp_1', 'RH_DefaultB_PFCd_1', 'RH_DefaultB_PFCv_1', 'RH_DefaultC_IPL_1', 'RH_DefaultC_Rsp_1', 'RH_DefaultC_PHC_1', 'RH_TempPar_1', 'RH_TempPar_2', 'RH_TempPar_3', 'RH_TempPar_4', 'sex'] [julearn]
2026-10-07 20:23:54 [info ] X_types:{'features': ['LH_VisCent_ExStr_1', 'LH_VisCent_ExStr_2', 'LH_VisCent_Striate_1', 'LH_VisCent_ExStr_3', 'LH_VisCent_ExStr_4', 'LH_VisCent_ExStr_5', 'LH_VisPeri_ExStrInf_1', 'LH_VisPeri_ExStrInf_2', 'LH_VisPeri_ExStrInf_3', 'LH_VisPeri_StriCal_1', 'LH_VisPeri_ExStrSup_1', 'LH_VisPeri_ExStrSup_2', 'LH_SomMotA_1', 'LH_SomMotA_2', 'LH_SomMotA_3', 'LH_SomMotA_4', 'LH_SomMotA_5', 'LH_SomMotA_6', 'LH_SomMotA_7', 'LH_SomMotA_8', 'LH_SomMotB_Aud_1', 'LH_SomMotB_Aud_2', 'LH_SomMotB_S2_1', 'LH_SomMotB_S2_2', 'LH_SomMotB_Aud_3', 'LH_SomMotB_S2_3', 'LH_SomMotB_Cent_1', 'LH_SomMotB_Cent_2', 'LH_DorsAttnA_TempOcc_1', 'LH_DorsAttnA_TempOcc_2', 'LH_DorsAttnA_ParOcc_1', 'LH_DorsAttnA_SPL_1', 'LH_DorsAttnA_SPL_2', 'LH_DorsAttnA_SPL_3', 'LH_DorsAttnB_PostC_1', 'LH_DorsAttnB_PostC_2', 'LH_DorsAttnB_PostC_3', 'LH_DorsAttnB_PostC_4', 'LH_DorsAttnB_FEF_1', 'LH_SalVentAttnA_ParOper_1', 'LH_SalVentAttnA_Ins_1', 'LH_SalVentAttnA_FrOper_1', 'LH_SalVentAttnA_FrOper_2', 'LH_SalVentAttnA_ParMed_1', 'LH_SalVentAttnA_FrMed_1', 'LH_SalVentAttnA_FrMed_2', 'LH_SalVentAttnB_IPL_1', 'LH_SalVentAttnB_PFCl_1', 'LH_SalVentAttnB_Ins_1', 'LH_SalVentAttnB_PFCmp_1', 'LH_LimbicB_OFC_1', 'LH_LimbicB_OFC_2', 'LH_LimbicA_TempPole_1', 'LH_LimbicA_TempPole_2', 'LH_LimbicA_TempPole_3', 'LH_LimbicA_TempPole_4', 'LH_ContA_Temp_1', 'LH_ContA_IPS_1', 'LH_ContA_IPS_2', 'LH_ContA_IPS_3', 'LH_ContA_PFCd_1', 'LH_ContA_PFClv_1', 'LH_ContA_PFCl_1', 'LH_ContA_PFCl_2', 'LH_ContA_PFCl_3', 'LH_ContA_Cingm_1', 'LH_ContB_Temp_1', 'LH_ContB_IPL_1', 'LH_ContB_PFCl_1', 'LH_ContB_PFClv_1', 'LH_ContB_PFClv_2', 'LH_ContC_pCun_1', 'LH_ContC_pCun_2', 'LH_ContC_Cingp_1', 'LH_DefaultA_IPL_1', 'LH_DefaultA_PFCd_1', 'LH_DefaultA_pCunPCC_1', 'LH_DefaultA_pCunPCC_2', 'LH_DefaultA_pCunPCC_3', 'LH_DefaultA_PFCm_1', 'LH_DefaultA_PFCm_2', 'LH_DefaultA_PFCm_3', 'LH_DefaultB_Temp_1', 'LH_DefaultB_Temp_2', 'LH_DefaultB_Temp_3', 'LH_DefaultB_Temp_4', 'LH_DefaultB_IPL_1', 'LH_DefaultB_PFCd_1', 'LH_DefaultB_PFCd_2', 'LH_DefaultB_PFCd_3', 'LH_DefaultB_PFCd_4', 'LH_DefaultB_PFCv_1', 'LH_DefaultB_PFCv_2', 'LH_DefaultB_PFCv_3', 'LH_DefaultB_PFCv_4', 'LH_DefaultC_IPL_1', 'LH_DefaultC_Rsp_1', 'LH_DefaultC_PHC_1', 'LH_TempPar_1', 'LH_TempPar_2', 'RH_VisCent_ExStr_1', 'RH_VisCent_ExStr_2', 'RH_VisCent_Striate_1', 'RH_VisCent_ExStr_3', 'RH_VisCent_ExStr_4', 'RH_VisCent_ExStr_5', 'RH_VisPeri_ExStrInf_1', 'RH_VisPeri_ExStrInf_2', 'RH_VisPeri_StriCal_1', 'RH_VisPeri_ExStrSup_1', 'RH_VisPeri_ExStrSup_2', 'RH_VisPeri_ExStrSup_3', 'RH_SomMotA_1', 'RH_SomMotA_2', 'RH_SomMotA_3', 'RH_SomMotA_4', 'RH_SomMotA_5', 'RH_SomMotA_6', 'RH_SomMotA_7', 'RH_SomMotA_8', 'RH_SomMotA_9', 'RH_SomMotA_10', 'RH_SomMotA_11', 'RH_SomMotB_Aud_1', 'RH_SomMotB_Aud_2', 'RH_SomMotB_S2_1', 'RH_SomMotB_S2_2', 'RH_SomMotB_S2_3', 'RH_SomMotB_S2_4', 'RH_SomMotB_Cent_1', 'RH_DorsAttnA_TempOcc_1', 'RH_DorsAttnA_ParOcc_1', 'RH_DorsAttnA_SPL_1', 'RH_DorsAttnA_SPL_2', 'RH_DorsAttnA_SPL_3', 'RH_DorsAttnA_SPL_4', 'RH_DorsAttnB_PostC_1', 'RH_DorsAttnB_PostC_2', 'RH_DorsAttnB_PostC_3', 'RH_DorsAttnB_PostC_4', 'RH_DorsAttnB_FEF_1', 'RH_SalVentAttnA_ParOper_1', 'RH_SalVentAttnA_PrC_1', 'RH_SalVentAttnA_Ins_1', 'RH_SalVentAttnA_Ins_2', 'RH_SalVentAttnA_FrOper_1', 'RH_SalVentAttnA_FrMed_1', 'RH_SalVentAttnA_ParMed_1', 'RH_SalVentAttnA_ParMed_2', 'RH_SalVentAttnA_FrMed_2', 'RH_SalVentAttnB_IPL_1', 'RH_SalVentAttnB_PFClv_1', 'RH_SalVentAttnB_PFCl_1', 'RH_SalVentAttnB_Ins_1', 'RH_SalVentAttnB_Ins_2', 'RH_SalVentAttnB_PFCmp_1', 'RH_LimbicB_OFC_1', 'RH_LimbicB_OFC_2', 'RH_LimbicB_OFC_3', 'RH_LimbicB_OFC_4', 'RH_LimbicA_TempPole_1', 'RH_LimbicA_TempPole_2', 'RH_LimbicA_TempPole_3', 'RH_LimbicA_TempPole_4', 'RH_ContA_IPS_1', 'RH_ContA_IPS_2', 'RH_ContA_PFCd_1', 'RH_ContA_PFCl_1', 'RH_ContA_PFCl_2', 'RH_ContA_Cingm_1', 'RH_ContB_Temp_1', 'RH_ContB_Temp_2', 'RH_ContB_IPL_1', 'RH_ContB_IPL_2', 'RH_ContB_PFCld_1', 'RH_ContB_PFCld_2', 'RH_ContB_PFClv_1', 'RH_ContB_PFClv_2', 'RH_ContB_PFCmp_1', 'RH_ContB_PFCld_3', 'RH_ContC_pCun_1', 'RH_ContC_pCun_2', 'RH_ContC_Cingp_1', 'RH_DefaultA_IPL_1', 'RH_DefaultA_PFCd_1', 'RH_DefaultA_pCunPCC_1', 'RH_DefaultA_PFCm_1', 'RH_DefaultA_PFCm_2', 'RH_DefaultA_PFCm_3', 'RH_DefaultB_Temp_1', 'RH_DefaultB_AntTemp_1', 'RH_DefaultB_PFCd_1', 'RH_DefaultB_PFCv_1', 'RH_DefaultC_IPL_1', 'RH_DefaultC_Rsp_1', 'RH_DefaultC_PHC_1', 'RH_TempPar_1', 'RH_TempPar_2', 'RH_TempPar_3', 'RH_TempPar_4'], 'confound': ['sex']} [julearn]
2026-10-07 20:23:54 [info ] ==================== [julearn]
2026-10-07 20:23:54 [info ] [julearn]
2026-10-07 20:23:54 [info ] = Model Parameters = [julearn]
2026-10-07 20:23:54 [info ] ==================== [julearn]
2026-10-07 20:23:54 [info ] [julearn]
2026-10-07 20:23:54 [info ] = Data Information = [julearn]
2026-10-07 20:23:54 [info ] Problem type: regression [julearn]
2026-10-07 20:23:54 [info ] Number of samples: 10 [julearn]
2026-10-07 20:23:54 [info ] Number of features: 201 [julearn]
2026-10-07 20:23:54 [info ] ==================== [julearn]
2026-10-07 20:23:54 [info ] [julearn]
2026-10-07 20:23:54 [info ] Target type: int64 [julearn]
2026-10-07 20:23:54 [info ] Using outer CV scheme KFold(n_splits=3, random_state=None, shuffle=False) [julearn]
fit_time score_time ... fold cv_mdsum
0 0.323961 0.045210 ... 0 509497eb21da473048117e0c6704d3ea
1 0.275375 0.037532 ... 1 509497eb21da473048117e0c6704d3ea
2 0.239722 0.044518 ... 2 509497eb21da473048117e0c6704d3ea
[3 rows x 8 columns]
Interpretation of results: Doing machine learning with only 10 datapoints is not meaningful. This explains the big variation in scores for different cross-validation folds.
Total running time of the script: (11 minutes 35.242 seconds)