14. What’s new#

14.1. Junifer 0.0.3 (2023-07-21)#

14.1.1. Bugfixes#

14.1.2. API Changes#

14.1.3. Improved Documentation#

  • Improve general prose, formatting and code blocks in docs and set line length for .rst files to 80 by Synchon Mandal (#220)

  • Update julearn example under examples by Synchon Mandal (#242)

14.1.4. Enhancements#

14.1.5. Features#

14.1.6. Misc#

14.2. Junifer 0.0.2 (2023-03-31)#

14.2.1. Bugfixes#

  • Fix a bug in which relative storage URIs will be computed relative to the CWD and not to the location of the YAML file by Fede Raimondo. (#127)

  • Fix junifer run to respect preprocess step specified in the pipeline by Synchon Mandal (#159)

  • Fix a bug in which only REST1 and REST2 tasks could be accessed in DataladHCP1200 and HCP1200 datagrabbers by Fede Raimondo (#183)

  • Fix a bug in which fitting a marker (e.g. SphereAggregation) on a specific type (e.g.: BOLD) will fail if another non-supported type (e.g.: BOLD_confounds) is present in the data object by Fede Raimondo (#185)

  • Fix ALFFParcels, ALFFSpheres, ReHoSpheres and ReHoParcels pass the extra_input parameter by Fede Raimondo (#187)

  • Fix several markers that did not properly handle the extra_input parameter by Fede Raimondo (#189)

  • Fix a bug in which relative paths in the YAML with directive would be computed relative to the current working directory of the process instead of the location of the YAML file by Fede Raimondo. (#191)

  • Fix an issue with datalad cache and locks in which the user-specific configuration might create a conflict in high throughput systems by Fede Raimondo (#192)

  • Fix a bug in which ParcelAggregation could yield duplicated column names if two or more parcels were used and label names were not unique by Fede Raimondo (#194)

  • Fix a bug in which count() will not be correctly applied across an axis by Fede Raimondo (#195)

  • Fix an issue with datalad cache and locks in which the overridden settings in Junifer were not propagated to subprocesses, resulting in using the default settings by Fede Raimondo (#199)

  • Fix a bug in which get_mask() fails for FunctionalConnectivityBase class, because of missing extra_input parameter by Leonard Sasse (#200)

  • Fix the output of RSSETSMarker to be 2D by Synchon Mandal (#215)

14.2.2. API Changes#

14.2.3. Improved Documentation#

  • Add more documentation on registering parcellations, coordinates, and masks by Leonard Sasse (#166)

  • Migrate and document changelog creation and maintenance via towncrier by Synchon Mandal (#203)

  • Add copy button to documentation code blocks by Synchon Mandal (#205)

  • Add sections starting and help in the documentation by Fede Raimondo (#210)

  • Shorten Sphinx references across code and docs, and add black shield in README by Synchon Mandal (#218)

14.2.4. Enhancements#

14.2.5. Features#

14.3. Junifer 0.0.1 (2022-12-20)#

14.3.1. Bugfixes#

14.3.2. API Changes#

  • Change the single_output default parameter in storage classes from False to True by Fede Raimondo (#134)

14.3.3. Improved Documentation#

14.3.4. Enhancements#

14.3.5. Features#

14.3.6. Misc#