8.3. UKB VBM GMD Extraction

Authors: Federico Raimondo

License: BSD 3 clause

2025-09-22 15:18:02,413 - JUNIFER - INFO - Registering OasisVBMTestingDataGrabber in datagrabber
2025-09-22 15:18:02,414 - JUNIFER - INFO - Registering SPMAuditoryTestingDataGrabber in datagrabber
2025-09-22 15:18:02,414 - JUNIFER - INFO - Registering PartlyCloudyTestingDataGrabber in datagrabber
2025-09-22 15:18:02,420 - JUNIFER - INFO - Registering ParcelAggregation in marker
2025-09-22 15:18:02,427 - JUNIFER - INFO - Registering SQLiteFeatureStorage in storage
2025-09-22 15:18:02,428 - JUNIFER - INFO - Validating Marker Collection
2025-09-22 15:18:02,428 - JUNIFER - INFO - DataGrabber output type: ['VBM_GM']
2025-09-22 15:18:02,428 - JUNIFER - INFO - Validating Data Reader:
2025-09-22 15:18:02,428 - JUNIFER - INFO - Data Reader output type: ['VBM_GM']
2025-09-22 15:18:02,428 - JUNIFER - INFO - Validating Marker: Schaefer1000x7_TrimMean80
2025-09-22 15:18:02,428 - JUNIFER - INFO - Marker output type: ['vector']
2025-09-22 15:18:02,428 - JUNIFER - INFO - Validating storage for Schaefer1000x7_TrimMean80
2025-09-22 15:18:02,428 - JUNIFER - INFO - Validating Marker: Schaefer1000x7_Mean
2025-09-22 15:18:02,428 - JUNIFER - INFO - Marker output type: ['vector']
2025-09-22 15:18:02,428 - JUNIFER - INFO - Validating storage for Schaefer1000x7_Mean
2025-09-22 15:18:02,428 - JUNIFER - INFO - Validating Marker: Schaefer1000x7_Std
2025-09-22 15:18:02,428 - JUNIFER - INFO - Marker output type: ['vector']
2025-09-22 15:18:02,428 - JUNIFER - INFO - Validating storage for Schaefer1000x7_Std

Added README.md to /github/home/nilearn_data


Dataset created in /github/home/nilearn_data/oasis1

Downloading data from https://www.nitrc.org/frs/download.php/6364/archive_dartel.tgz ...

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Downloaded 730021888 of 905208634 bytes (80.6%,    1.0s remaining) ...done. (5 seconds, 0 min)
Extracting data from /github/home/nilearn_data/oasis1/7088b0bf88f5650db26e32ec3afdd589/archive_dartel.tgz..... done.
2025-09-22 15:18:13,323 - JUNIFER - INFO - Getting element sub-01
2025-09-22 15:18:13,323 - JUNIFER - INFO - Fitting pipeline
2025-09-22 15:18:13,323 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0001_MR1/mwrc1OAS1_0001_MR1_mpr_anon_fslswapdim_bet.nii.gz
2025-09-22 15:18:13,323 - JUNIFER - INFO - VBM_GM is of type NIFTI
2025-09-22 15:18:13,324 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2025-09-22 15:18:13,324 - JUNIFER - INFO - Computing VBM_GM
2025-09-22 15:18:13,324 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-09-22 15:18:13,324 - JUNIFER - INFO - Parcellation parameters:
2025-09-22 15:18:13,325 - JUNIFER - INFO -      resolution: None
2025-09-22 15:18:13,325 - JUNIFER - INFO -      n_rois: 1000
2025-09-22 15:18:13,325 - JUNIFER - INFO -      yeo_networks: 7
2025-09-22 15:18:13,325 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-09-22 15:18:14,928 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v4/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-09-22 15:18:17,317 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
Downloading https://templateflow.s3.amazonaws.com/tpl-MNI152Lin/tpl-MNI152Lin_res-01_T1w.nii.gz

  0%|          | 0.00/10.7M [00:00<?, ?B/s]
 63%|██████▎   | 6.69M/10.7M [00:00<00:00, 66.9MB/s]
100%|██████████| 10.7M/10.7M [00:00<00:00, 77.1MB/s]
2025-09-22 15:18:18,186 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpi7818tzr/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_5c557adc-97c7-11f0-a4c0-5ace1b2a80e5zws2uk7u/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpi7818tzr/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_5c557adc-97c7-11f0-a4c0-5ace1b2a80e5zws2uk7u/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v4/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpi7818tzr/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_5c557adc-97c7-11f0-a4c0-5ace1b2a80e5zws2uk7u/parcellation_warped.nii.gz
2025-09-22 15:19:12,899 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-09-22 15:19:14,474 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpu42glz8x/test.sqlite (multiple output)>
2025-09-22 15:19:14,650 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2025-09-22 15:19:14,650 - JUNIFER - INFO - Computing VBM_GM
2025-09-22 15:19:14,650 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-09-22 15:19:14,650 - JUNIFER - INFO - Parcellation parameters:
2025-09-22 15:19:14,651 - JUNIFER - INFO -      resolution: None
2025-09-22 15:19:14,651 - JUNIFER - INFO -      n_rois: 1000
2025-09-22 15:19:14,651 - JUNIFER - INFO -      yeo_networks: 7
2025-09-22 15:19:14,651 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-09-22 15:19:14,726 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v4/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-09-22 15:19:17,248 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-09-22 15:19:17,759 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpi7818tzr/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_7ff98d66-97c7-11f0-a4c0-5ace1b2a80e5uqloxkha/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpi7818tzr/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_7ff98d66-97c7-11f0-a4c0-5ace1b2a80e5uqloxkha/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v4/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpi7818tzr/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_7ff98d66-97c7-11f0-a4c0-5ace1b2a80e5uqloxkha/parcellation_warped.nii.gz
2025-09-22 15:20:12,616 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-09-22 15:20:14,162 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpu42glz8x/test.sqlite (multiple output)>
2025-09-22 15:20:14,345 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2025-09-22 15:20:14,345 - JUNIFER - INFO - Computing VBM_GM
2025-09-22 15:20:14,345 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-09-22 15:20:14,345 - JUNIFER - INFO - Parcellation parameters:
2025-09-22 15:20:14,345 - JUNIFER - INFO -      resolution: None
2025-09-22 15:20:14,345 - JUNIFER - INFO -      n_rois: 1000
2025-09-22 15:20:14,345 - JUNIFER - INFO -      yeo_networks: 7
2025-09-22 15:20:14,345 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-09-22 15:20:14,422 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v4/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-09-22 15:20:16,924 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-09-22 15:20:17,446 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpi7818tzr/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a38e741c-97c7-11f0-a4c0-5ace1b2a80e551_0qf7c/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpi7818tzr/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a38e741c-97c7-11f0-a4c0-5ace1b2a80e551_0qf7c/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v4/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpi7818tzr/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a38e741c-97c7-11f0-a4c0-5ace1b2a80e551_0qf7c/parcellation_warped.nii.gz
2025-09-22 15:21:11,689 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-09-22 15:21:13,274 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpu42glz8x/test.sqlite (multiple output)>
2025-09-22 15:21:13,455 - JUNIFER - INFO - Marker collection fitting done
2025-09-22 15:21:13,462 - JUNIFER - INFO - Getting element sub-02
2025-09-22 15:21:13,463 - JUNIFER - INFO - Fitting pipeline
2025-09-22 15:21:13,463 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0002_MR1/mwrc1OAS1_0002_MR1_mpr_anon_fslswapdim_bet.nii.gz
2025-09-22 15:21:13,463 - JUNIFER - INFO - VBM_GM is of type NIFTI
2025-09-22 15:21:13,464 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2025-09-22 15:21:13,464 - JUNIFER - INFO - Computing VBM_GM
2025-09-22 15:21:13,464 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-09-22 15:21:13,464 - JUNIFER - INFO - Parcellation parameters:
2025-09-22 15:21:13,464 - JUNIFER - INFO -      resolution: None
2025-09-22 15:21:13,464 - JUNIFER - INFO -      n_rois: 1000
2025-09-22 15:21:13,464 - JUNIFER - INFO -      yeo_networks: 7
2025-09-22 15:21:13,464 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-09-22 15:21:13,539 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v4/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-09-22 15:21:16,082 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-09-22 15:21:16,592 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpp3j0np49/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_c6cab7d8-97c7-11f0-a4c0-5ace1b2a80e59xkdgeh5/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpp3j0np49/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_c6cab7d8-97c7-11f0-a4c0-5ace1b2a80e59xkdgeh5/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v4/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpp3j0np49/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_c6cab7d8-97c7-11f0-a4c0-5ace1b2a80e59xkdgeh5/parcellation_warped.nii.gz
2025-09-22 15:22:10,663 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-09-22 15:22:12,212 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpu42glz8x/test.sqlite (multiple output)>
2025-09-22 15:22:12,384 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2025-09-22 15:22:12,384 - JUNIFER - INFO - Computing VBM_GM
2025-09-22 15:22:12,384 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-09-22 15:22:12,384 - JUNIFER - INFO - Parcellation parameters:
2025-09-22 15:22:12,384 - JUNIFER - INFO -      resolution: None
2025-09-22 15:22:12,384 - JUNIFER - INFO -      n_rois: 1000
2025-09-22 15:22:12,384 - JUNIFER - INFO -      yeo_networks: 7
2025-09-22 15:22:12,384 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-09-22 15:22:12,460 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v4/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-09-22 15:22:14,938 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-09-22 15:22:15,450 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpp3j0np49/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_e9e945ae-97c7-11f0-a4c0-5ace1b2a80e5zjan6kqy/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpp3j0np49/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_e9e945ae-97c7-11f0-a4c0-5ace1b2a80e5zjan6kqy/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v4/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpp3j0np49/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_e9e945ae-97c7-11f0-a4c0-5ace1b2a80e5zjan6kqy/parcellation_warped.nii.gz
2025-09-22 15:23:09,279 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-09-22 15:23:10,864 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpu42glz8x/test.sqlite (multiple output)>
2025-09-22 15:23:11,044 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2025-09-22 15:23:11,044 - JUNIFER - INFO - Computing VBM_GM
2025-09-22 15:23:11,045 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-09-22 15:23:11,045 - JUNIFER - INFO - Parcellation parameters:
2025-09-22 15:23:11,045 - JUNIFER - INFO -      resolution: None
2025-09-22 15:23:11,045 - JUNIFER - INFO -      n_rois: 1000
2025-09-22 15:23:11,045 - JUNIFER - INFO -      yeo_networks: 7
2025-09-22 15:23:11,045 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-09-22 15:23:11,120 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v4/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-09-22 15:23:13,571 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-09-22 15:23:14,081 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpp3j0np49/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_0ce05e30-97c8-11f0-a4c0-5ace1b2a80e55l_0c5xy/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpp3j0np49/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_0ce05e30-97c8-11f0-a4c0-5ace1b2a80e55l_0c5xy/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v4/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpp3j0np49/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_0ce05e30-97c8-11f0-a4c0-5ace1b2a80e55l_0c5xy/parcellation_warped.nii.gz
2025-09-22 15:24:08,212 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-09-22 15:24:09,808 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpu42glz8x/test.sqlite (multiple output)>
2025-09-22 15:24:09,991 - JUNIFER - INFO - Marker collection fitting done
2025-09-22 15:24:09,999 - JUNIFER - INFO - Getting element sub-03
2025-09-22 15:24:10,000 - JUNIFER - INFO - Fitting pipeline
2025-09-22 15:24:10,000 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0003_MR1/mwrc1OAS1_0003_MR1_mpr_anon_fslswapdim_bet.nii.gz
2025-09-22 15:24:10,000 - JUNIFER - INFO - VBM_GM is of type NIFTI
2025-09-22 15:24:10,001 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2025-09-22 15:24:10,001 - JUNIFER - INFO - Computing VBM_GM
2025-09-22 15:24:10,001 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-09-22 15:24:10,001 - JUNIFER - INFO - Parcellation parameters:
2025-09-22 15:24:10,001 - JUNIFER - INFO -      resolution: None
2025-09-22 15:24:10,001 - JUNIFER - INFO -      n_rois: 1000
2025-09-22 15:24:10,001 - JUNIFER - INFO -      yeo_networks: 7
2025-09-22 15:24:10,001 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-09-22 15:24:10,077 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v4/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-09-22 15:24:12,542 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-09-22 15:24:13,052 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpjprx51p4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_30046780-97c8-11f0-a4c0-5ace1b2a80e5x2e6dh6b/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpjprx51p4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_30046780-97c8-11f0-a4c0-5ace1b2a80e5x2e6dh6b/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v4/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpjprx51p4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_30046780-97c8-11f0-a4c0-5ace1b2a80e5x2e6dh6b/parcellation_warped.nii.gz
2025-09-22 15:25:06,650 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-09-22 15:25:08,184 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpu42glz8x/test.sqlite (multiple output)>
2025-09-22 15:25:08,363 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2025-09-22 15:25:08,363 - JUNIFER - INFO - Computing VBM_GM
2025-09-22 15:25:08,363 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-09-22 15:25:08,363 - JUNIFER - INFO - Parcellation parameters:
2025-09-22 15:25:08,363 - JUNIFER - INFO -      resolution: None
2025-09-22 15:25:08,363 - JUNIFER - INFO -      n_rois: 1000
2025-09-22 15:25:08,363 - JUNIFER - INFO -      yeo_networks: 7
2025-09-22 15:25:08,363 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-09-22 15:25:08,439 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v4/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-09-22 15:25:10,907 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-09-22 15:25:11,417 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpjprx51p4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_52ce1ab8-97c8-11f0-a4c0-5ace1b2a80e5uf6oc0k0/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpjprx51p4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_52ce1ab8-97c8-11f0-a4c0-5ace1b2a80e5uf6oc0k0/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v4/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpjprx51p4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_52ce1ab8-97c8-11f0-a4c0-5ace1b2a80e5uf6oc0k0/parcellation_warped.nii.gz
2025-09-22 15:26:05,806 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-09-22 15:26:07,352 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpu42glz8x/test.sqlite (multiple output)>
2025-09-22 15:26:07,530 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2025-09-22 15:26:07,530 - JUNIFER - INFO - Computing VBM_GM
2025-09-22 15:26:07,530 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-09-22 15:26:07,530 - JUNIFER - INFO - Parcellation parameters:
2025-09-22 15:26:07,530 - JUNIFER - INFO -      resolution: None
2025-09-22 15:26:07,530 - JUNIFER - INFO -      n_rois: 1000
2025-09-22 15:26:07,530 - JUNIFER - INFO -      yeo_networks: 7
2025-09-22 15:26:07,530 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-09-22 15:26:07,606 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v4/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-09-22 15:26:10,069 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-09-22 15:26:10,578 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpjprx51p4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_7611f3be-97c8-11f0-a4c0-5ace1b2a80e5gemhpjgo/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpjprx51p4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_7611f3be-97c8-11f0-a4c0-5ace1b2a80e5gemhpjgo/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v4/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpjprx51p4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_7611f3be-97c8-11f0-a4c0-5ace1b2a80e5gemhpjgo/parcellation_warped.nii.gz
2025-09-22 15:27:04,876 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-09-22 15:27:06,427 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpu42glz8x/test.sqlite (multiple output)>
2025-09-22 15:27:06,613 - JUNIFER - INFO - Marker collection fitting done
2025-09-22 15:27:06,621 - JUNIFER - INFO - Getting element sub-04
2025-09-22 15:27:06,621 - JUNIFER - INFO - Fitting pipeline
2025-09-22 15:27:06,621 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0004_MR1/mwrc1OAS1_0004_MR1_mpr_anon_fslswapdim_bet.nii.gz
2025-09-22 15:27:06,621 - JUNIFER - INFO - VBM_GM is of type NIFTI
2025-09-22 15:27:06,622 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2025-09-22 15:27:06,622 - JUNIFER - INFO - Computing VBM_GM
2025-09-22 15:27:06,622 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-09-22 15:27:06,622 - JUNIFER - INFO - Parcellation parameters:
2025-09-22 15:27:06,622 - JUNIFER - INFO -      resolution: None
2025-09-22 15:27:06,622 - JUNIFER - INFO -      n_rois: 1000
2025-09-22 15:27:06,622 - JUNIFER - INFO -      yeo_networks: 7
2025-09-22 15:27:06,622 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-09-22 15:27:06,698 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v4/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-09-22 15:27:09,150 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-09-22 15:27:09,658 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp73us_m7n/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_994a8634-97c8-11f0-a4c0-5ace1b2a80e5nr9droqx/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp73us_m7n/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_994a8634-97c8-11f0-a4c0-5ace1b2a80e5nr9droqx/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v4/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmp73us_m7n/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_994a8634-97c8-11f0-a4c0-5ace1b2a80e5nr9droqx/parcellation_warped.nii.gz
2025-09-22 15:28:04,003 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-09-22 15:28:05,579 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpu42glz8x/test.sqlite (multiple output)>
2025-09-22 15:28:05,755 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2025-09-22 15:28:05,755 - JUNIFER - INFO - Computing VBM_GM
2025-09-22 15:28:05,755 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-09-22 15:28:05,756 - JUNIFER - INFO - Parcellation parameters:
2025-09-22 15:28:05,756 - JUNIFER - INFO -      resolution: None
2025-09-22 15:28:05,756 - JUNIFER - INFO -      n_rois: 1000
2025-09-22 15:28:05,756 - JUNIFER - INFO -      yeo_networks: 7
2025-09-22 15:28:05,756 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-09-22 15:28:05,831 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v4/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-09-22 15:28:08,292 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-09-22 15:28:08,804 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp73us_m7n/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_bc896fa2-97c8-11f0-a4c0-5ace1b2a80e5eq4656m_/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp73us_m7n/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_bc896fa2-97c8-11f0-a4c0-5ace1b2a80e5eq4656m_/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v4/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmp73us_m7n/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_bc896fa2-97c8-11f0-a4c0-5ace1b2a80e5eq4656m_/parcellation_warped.nii.gz
2025-09-22 15:29:02,596 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-09-22 15:29:04,155 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpu42glz8x/test.sqlite (multiple output)>
2025-09-22 15:29:04,332 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2025-09-22 15:29:04,332 - JUNIFER - INFO - Computing VBM_GM
2025-09-22 15:29:04,333 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-09-22 15:29:04,333 - JUNIFER - INFO - Parcellation parameters:
2025-09-22 15:29:04,333 - JUNIFER - INFO -      resolution: None
2025-09-22 15:29:04,333 - JUNIFER - INFO -      n_rois: 1000
2025-09-22 15:29:04,333 - JUNIFER - INFO -      yeo_networks: 7
2025-09-22 15:29:04,333 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-09-22 15:29:04,408 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v4/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-09-22 15:29:06,883 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-09-22 15:29:07,396 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp73us_m7n/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_df73722e-97c8-11f0-a4c0-5ace1b2a80e5wkv2ye77/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp73us_m7n/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_df73722e-97c8-11f0-a4c0-5ace1b2a80e5wkv2ye77/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v4/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmp73us_m7n/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_df73722e-97c8-11f0-a4c0-5ace1b2a80e5wkv2ye77/parcellation_warped.nii.gz
2025-09-22 15:30:01,927 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-09-22 15:30:03,527 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpu42glz8x/test.sqlite (multiple output)>
2025-09-22 15:30:03,721 - JUNIFER - INFO - Marker collection fitting done
2025-09-22 15:30:03,729 - JUNIFER - INFO - Getting element sub-05
2025-09-22 15:30:03,729 - JUNIFER - INFO - Fitting pipeline
2025-09-22 15:30:03,729 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0005_MR1/mwrc1OAS1_0005_MR1_mpr_anon_fslswapdim_bet.nii.gz
2025-09-22 15:30:03,729 - JUNIFER - INFO - VBM_GM is of type NIFTI
2025-09-22 15:30:03,730 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2025-09-22 15:30:03,730 - JUNIFER - INFO - Computing VBM_GM
2025-09-22 15:30:03,731 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-09-22 15:30:03,731 - JUNIFER - INFO - Parcellation parameters:
2025-09-22 15:30:03,731 - JUNIFER - INFO -      resolution: None
2025-09-22 15:30:03,731 - JUNIFER - INFO -      n_rois: 1000
2025-09-22 15:30:03,731 - JUNIFER - INFO -      yeo_networks: 7
2025-09-22 15:30:03,731 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-09-22 15:30:03,806 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v4/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-09-22 15:30:06,311 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-09-22 15:30:06,823 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpicl3zmoh/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_02dacb68-97c9-11f0-a4c0-5ace1b2a80e5iiceonyv/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpicl3zmoh/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_02dacb68-97c9-11f0-a4c0-5ace1b2a80e5iiceonyv/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v4/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpicl3zmoh/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_02dacb68-97c9-11f0-a4c0-5ace1b2a80e5iiceonyv/parcellation_warped.nii.gz
2025-09-22 15:31:01,332 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-09-22 15:31:02,890 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpu42glz8x/test.sqlite (multiple output)>
2025-09-22 15:31:03,062 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2025-09-22 15:31:03,062 - JUNIFER - INFO - Computing VBM_GM
2025-09-22 15:31:03,062 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-09-22 15:31:03,062 - JUNIFER - INFO - Parcellation parameters:
2025-09-22 15:31:03,062 - JUNIFER - INFO -      resolution: None
2025-09-22 15:31:03,062 - JUNIFER - INFO -      n_rois: 1000
2025-09-22 15:31:03,062 - JUNIFER - INFO -      yeo_networks: 7
2025-09-22 15:31:03,062 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-09-22 15:31:03,137 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v4/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-09-22 15:31:05,596 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-09-22 15:31:06,107 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpicl3zmoh/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_263826be-97c9-11f0-a4c0-5ace1b2a80e59r2fe2ex/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpicl3zmoh/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_263826be-97c9-11f0-a4c0-5ace1b2a80e59r2fe2ex/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v4/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpicl3zmoh/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_263826be-97c9-11f0-a4c0-5ace1b2a80e59r2fe2ex/parcellation_warped.nii.gz
2025-09-22 15:32:00,614 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-09-22 15:32:02,182 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpu42glz8x/test.sqlite (multiple output)>
2025-09-22 15:32:02,360 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2025-09-22 15:32:02,360 - JUNIFER - INFO - Computing VBM_GM
2025-09-22 15:32:02,360 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-09-22 15:32:02,360 - JUNIFER - INFO - Parcellation parameters:
2025-09-22 15:32:02,360 - JUNIFER - INFO -      resolution: None
2025-09-22 15:32:02,360 - JUNIFER - INFO -      n_rois: 1000
2025-09-22 15:32:02,361 - JUNIFER - INFO -      yeo_networks: 7
2025-09-22 15:32:02,361 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-09-22 15:32:02,435 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v4/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-09-22 15:32:04,902 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-09-22 15:32:05,412 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpicl3zmoh/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_4990cb5c-97c9-11f0-a4c0-5ace1b2a80e52olppoim/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpicl3zmoh/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_4990cb5c-97c9-11f0-a4c0-5ace1b2a80e52olppoim/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v4/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpicl3zmoh/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_4990cb5c-97c9-11f0-a4c0-5ace1b2a80e52olppoim/parcellation_warped.nii.gz
2025-09-22 15:32:58,444 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-09-22 15:33:00,008 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpu42glz8x/test.sqlite (multiple output)>
2025-09-22 15:33:00,193 - JUNIFER - INFO - Marker collection fitting done
2025-09-22 15:33:00,200 - JUNIFER - INFO - Getting element sub-06
2025-09-22 15:33:00,200 - JUNIFER - INFO - Fitting pipeline
2025-09-22 15:33:00,200 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0006_MR1/mwrc1OAS1_0006_MR1_mpr_anon_fslswapdim_bet.nii.gz
2025-09-22 15:33:00,201 - JUNIFER - INFO - VBM_GM is of type NIFTI
2025-09-22 15:33:00,202 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2025-09-22 15:33:00,202 - JUNIFER - INFO - Computing VBM_GM
2025-09-22 15:33:00,202 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-09-22 15:33:00,202 - JUNIFER - INFO - Parcellation parameters:
2025-09-22 15:33:00,202 - JUNIFER - INFO -      resolution: None
2025-09-22 15:33:00,202 - JUNIFER - INFO -      n_rois: 1000
2025-09-22 15:33:00,202 - JUNIFER - INFO -      yeo_networks: 7
2025-09-22 15:33:00,202 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-09-22 15:33:00,277 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v4/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-09-22 15:33:02,739 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-09-22 15:33:03,250 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp4f7qgv6h/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_6c0a7b10-97c9-11f0-a4c0-5ace1b2a80e58ow1up35/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp4f7qgv6h/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_6c0a7b10-97c9-11f0-a4c0-5ace1b2a80e58ow1up35/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v4/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmp4f7qgv6h/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_6c0a7b10-97c9-11f0-a4c0-5ace1b2a80e58ow1up35/parcellation_warped.nii.gz
2025-09-22 15:33:57,661 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-09-22 15:33:59,208 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpu42glz8x/test.sqlite (multiple output)>
2025-09-22 15:33:59,382 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2025-09-22 15:33:59,383 - JUNIFER - INFO - Computing VBM_GM
2025-09-22 15:33:59,383 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-09-22 15:33:59,383 - JUNIFER - INFO - Parcellation parameters:
2025-09-22 15:33:59,383 - JUNIFER - INFO -      resolution: None
2025-09-22 15:33:59,383 - JUNIFER - INFO -      n_rois: 1000
2025-09-22 15:33:59,383 - JUNIFER - INFO -      yeo_networks: 7
2025-09-22 15:33:59,383 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-09-22 15:33:59,459 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v4/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-09-22 15:34:01,933 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-09-22 15:34:02,444 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp4f7qgv6h/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_8f509f82-97c9-11f0-a4c0-5ace1b2a80e5pz48aslp/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp4f7qgv6h/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_8f509f82-97c9-11f0-a4c0-5ace1b2a80e5pz48aslp/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v4/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmp4f7qgv6h/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_8f509f82-97c9-11f0-a4c0-5ace1b2a80e5pz48aslp/parcellation_warped.nii.gz
2025-09-22 15:34:57,333 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-09-22 15:34:58,919 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpu42glz8x/test.sqlite (multiple output)>
2025-09-22 15:34:59,101 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2025-09-22 15:34:59,102 - JUNIFER - INFO - Computing VBM_GM
2025-09-22 15:34:59,102 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-09-22 15:34:59,102 - JUNIFER - INFO - Parcellation parameters:
2025-09-22 15:34:59,102 - JUNIFER - INFO -      resolution: None
2025-09-22 15:34:59,102 - JUNIFER - INFO -      n_rois: 1000
2025-09-22 15:34:59,102 - JUNIFER - INFO -      yeo_networks: 7
2025-09-22 15:34:59,102 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-09-22 15:34:59,179 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v4/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-09-22 15:35:01,631 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-09-22 15:35:02,142 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp4f7qgv6h/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_b2e97202-97c9-11f0-a4c0-5ace1b2a80e56xpsz8s1/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp4f7qgv6h/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_b2e97202-97c9-11f0-a4c0-5ace1b2a80e56xpsz8s1/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v4/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmp4f7qgv6h/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_b2e97202-97c9-11f0-a4c0-5ace1b2a80e56xpsz8s1/parcellation_warped.nii.gz
2025-09-22 15:35:56,897 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-09-22 15:35:58,437 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpu42glz8x/test.sqlite (multiple output)>
2025-09-22 15:35:58,621 - JUNIFER - INFO - Marker collection fitting done
2025-09-22 15:35:58,629 - JUNIFER - INFO - Getting element sub-07
2025-09-22 15:35:58,629 - JUNIFER - INFO - Fitting pipeline
2025-09-22 15:35:58,629 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0007_MR1/mwrc1OAS1_0007_MR1_mpr_anon_fslswapdim_bet.nii.gz
2025-09-22 15:35:58,629 - JUNIFER - INFO - VBM_GM is of type NIFTI
2025-09-22 15:35:58,630 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2025-09-22 15:35:58,631 - JUNIFER - INFO - Computing VBM_GM
2025-09-22 15:35:58,631 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-09-22 15:35:58,631 - JUNIFER - INFO - Parcellation parameters:
2025-09-22 15:35:58,631 - JUNIFER - INFO -      resolution: None
2025-09-22 15:35:58,631 - JUNIFER - INFO -      n_rois: 1000
2025-09-22 15:35:58,631 - JUNIFER - INFO -      yeo_networks: 7
2025-09-22 15:35:58,631 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-09-22 15:35:58,707 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v4/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-09-22 15:36:01,155 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-09-22 15:36:01,667 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpa0deui2q/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_d6649400-97c9-11f0-a4c0-5ace1b2a80e5mi9c8hi_/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpa0deui2q/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_d6649400-97c9-11f0-a4c0-5ace1b2a80e5mi9c8hi_/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v4/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpa0deui2q/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_d6649400-97c9-11f0-a4c0-5ace1b2a80e5mi9c8hi_/parcellation_warped.nii.gz
2025-09-22 15:36:55,256 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-09-22 15:36:56,824 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpu42glz8x/test.sqlite (multiple output)>
2025-09-22 15:36:57,000 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2025-09-22 15:36:57,000 - JUNIFER - INFO - Computing VBM_GM
2025-09-22 15:36:57,000 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-09-22 15:36:57,000 - JUNIFER - INFO - Parcellation parameters:
2025-09-22 15:36:57,000 - JUNIFER - INFO -      resolution: None
2025-09-22 15:36:57,000 - JUNIFER - INFO -      n_rois: 1000
2025-09-22 15:36:57,000 - JUNIFER - INFO -      yeo_networks: 7
2025-09-22 15:36:57,000 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-09-22 15:36:57,076 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v4/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-09-22 15:36:59,546 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-09-22 15:37:00,059 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpa0deui2q/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_f92ee846-97c9-11f0-a4c0-5ace1b2a80e5baxt_0h3/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpa0deui2q/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_f92ee846-97c9-11f0-a4c0-5ace1b2a80e5baxt_0h3/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v4/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpa0deui2q/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_f92ee846-97c9-11f0-a4c0-5ace1b2a80e5baxt_0h3/parcellation_warped.nii.gz
2025-09-22 15:37:54,756 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-09-22 15:37:56,299 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpu42glz8x/test.sqlite (multiple output)>
2025-09-22 15:37:56,477 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2025-09-22 15:37:56,477 - JUNIFER - INFO - Computing VBM_GM
2025-09-22 15:37:56,478 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-09-22 15:37:56,478 - JUNIFER - INFO - Parcellation parameters:
2025-09-22 15:37:56,478 - JUNIFER - INFO -      resolution: None
2025-09-22 15:37:56,478 - JUNIFER - INFO -      n_rois: 1000
2025-09-22 15:37:56,478 - JUNIFER - INFO -      yeo_networks: 7
2025-09-22 15:37:56,478 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-09-22 15:37:56,553 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v4/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-09-22 15:37:59,011 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-09-22 15:37:59,520 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpa0deui2q/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_1ca293a4-97ca-11f0-a4c0-5ace1b2a80e5ji4p1g14/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpa0deui2q/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_1ca293a4-97ca-11f0-a4c0-5ace1b2a80e5ji4p1g14/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v4/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpa0deui2q/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_1ca293a4-97ca-11f0-a4c0-5ace1b2a80e5ji4p1g14/parcellation_warped.nii.gz
2025-09-22 15:38:53,409 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-09-22 15:38:54,961 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpu42glz8x/test.sqlite (multiple output)>
2025-09-22 15:38:55,144 - JUNIFER - INFO - Marker collection fitting done
2025-09-22 15:38:55,152 - JUNIFER - INFO - Getting element sub-08
2025-09-22 15:38:55,152 - JUNIFER - INFO - Fitting pipeline
2025-09-22 15:38:55,152 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0009_MR1/mwrc1OAS1_0009_MR1_mpr_anon_fslswapdim_bet.nii.gz
2025-09-22 15:38:55,152 - JUNIFER - INFO - VBM_GM is of type NIFTI
2025-09-22 15:38:55,153 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2025-09-22 15:38:55,153 - JUNIFER - INFO - Computing VBM_GM
2025-09-22 15:38:55,153 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-09-22 15:38:55,153 - JUNIFER - INFO - Parcellation parameters:
2025-09-22 15:38:55,153 - JUNIFER - INFO -      resolution: None
2025-09-22 15:38:55,153 - JUNIFER - INFO -      n_rois: 1000
2025-09-22 15:38:55,154 - JUNIFER - INFO -      yeo_networks: 7
2025-09-22 15:38:55,154 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-09-22 15:38:55,229 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v4/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-09-22 15:38:57,663 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-09-22 15:38:58,175 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp2wd9zg4y/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_3f9b936a-97ca-11f0-a4c0-5ace1b2a80e54p7e8yha/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp2wd9zg4y/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_3f9b936a-97ca-11f0-a4c0-5ace1b2a80e54p7e8yha/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v4/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmp2wd9zg4y/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_3f9b936a-97ca-11f0-a4c0-5ace1b2a80e54p7e8yha/parcellation_warped.nii.gz
2025-09-22 15:39:51,583 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-09-22 15:39:53,132 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpu42glz8x/test.sqlite (multiple output)>
2025-09-22 15:39:53,308 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2025-09-22 15:39:53,308 - JUNIFER - INFO - Computing VBM_GM
2025-09-22 15:39:53,308 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-09-22 15:39:53,308 - JUNIFER - INFO - Parcellation parameters:
2025-09-22 15:39:53,309 - JUNIFER - INFO -      resolution: None
2025-09-22 15:39:53,309 - JUNIFER - INFO -      n_rois: 1000
2025-09-22 15:39:53,309 - JUNIFER - INFO -      yeo_networks: 7
2025-09-22 15:39:53,309 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-09-22 15:39:53,384 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v4/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-09-22 15:39:55,818 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-09-22 15:39:56,327 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp2wd9zg4y/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_62452dcc-97ca-11f0-a4c0-5ace1b2a80e5eqrufr5k/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp2wd9zg4y/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_62452dcc-97ca-11f0-a4c0-5ace1b2a80e5eqrufr5k/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v4/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmp2wd9zg4y/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_62452dcc-97ca-11f0-a4c0-5ace1b2a80e5eqrufr5k/parcellation_warped.nii.gz
2025-09-22 15:40:49,308 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-09-22 15:40:50,889 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpu42glz8x/test.sqlite (multiple output)>
2025-09-22 15:40:51,066 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2025-09-22 15:40:51,067 - JUNIFER - INFO - Computing VBM_GM
2025-09-22 15:40:51,067 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-09-22 15:40:51,067 - JUNIFER - INFO - Parcellation parameters:
2025-09-22 15:40:51,067 - JUNIFER - INFO -      resolution: None
2025-09-22 15:40:51,067 - JUNIFER - INFO -      n_rois: 1000
2025-09-22 15:40:51,067 - JUNIFER - INFO -      yeo_networks: 7
2025-09-22 15:40:51,067 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-09-22 15:40:51,144 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v4/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-09-22 15:40:53,616 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-09-22 15:40:54,127 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp2wd9zg4y/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_84b36bda-97ca-11f0-a4c0-5ace1b2a80e5vq1po8mm/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp2wd9zg4y/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_84b36bda-97ca-11f0-a4c0-5ace1b2a80e5vq1po8mm/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v4/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmp2wd9zg4y/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_84b36bda-97ca-11f0-a4c0-5ace1b2a80e5vq1po8mm/parcellation_warped.nii.gz
2025-09-22 15:41:48,189 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-09-22 15:41:49,717 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpu42glz8x/test.sqlite (multiple output)>
2025-09-22 15:41:49,900 - JUNIFER - INFO - Marker collection fitting done
2025-09-22 15:41:49,907 - JUNIFER - INFO - Getting element sub-09
2025-09-22 15:41:49,908 - JUNIFER - INFO - Fitting pipeline
2025-09-22 15:41:49,908 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0010_MR1/mwrc1OAS1_0010_MR1_mpr_anon_fslswapdim_bet.nii.gz
2025-09-22 15:41:49,908 - JUNIFER - INFO - VBM_GM is of type NIFTI
2025-09-22 15:41:49,909 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2025-09-22 15:41:49,909 - JUNIFER - INFO - Computing VBM_GM
2025-09-22 15:41:49,909 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-09-22 15:41:49,909 - JUNIFER - INFO - Parcellation parameters:
2025-09-22 15:41:49,909 - JUNIFER - INFO -      resolution: None
2025-09-22 15:41:49,909 - JUNIFER - INFO -      n_rois: 1000
2025-09-22 15:41:49,909 - JUNIFER - INFO -      yeo_networks: 7
2025-09-22 15:41:49,909 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-09-22 15:41:49,985 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v4/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-09-22 15:41:52,443 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-09-22 15:41:52,954 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpm_ijanq1/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a7c4fdc8-97ca-11f0-a4c0-5ace1b2a80e5dni282no/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpm_ijanq1/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a7c4fdc8-97ca-11f0-a4c0-5ace1b2a80e5dni282no/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v4/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpm_ijanq1/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a7c4fdc8-97ca-11f0-a4c0-5ace1b2a80e5dni282no/parcellation_warped.nii.gz
2025-09-22 15:42:46,798 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-09-22 15:42:48,388 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpu42glz8x/test.sqlite (multiple output)>
2025-09-22 15:42:48,560 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2025-09-22 15:42:48,561 - JUNIFER - INFO - Computing VBM_GM
2025-09-22 15:42:48,561 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-09-22 15:42:48,561 - JUNIFER - INFO - Parcellation parameters:
2025-09-22 15:42:48,561 - JUNIFER - INFO -      resolution: None
2025-09-22 15:42:48,561 - JUNIFER - INFO -      n_rois: 1000
2025-09-22 15:42:48,561 - JUNIFER - INFO -      yeo_networks: 7
2025-09-22 15:42:48,561 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-09-22 15:42:48,637 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v4/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-09-22 15:42:51,102 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-09-22 15:42:51,613 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpm_ijanq1/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_cabac6aa-97ca-11f0-a4c0-5ace1b2a80e56159cbgu/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpm_ijanq1/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_cabac6aa-97ca-11f0-a4c0-5ace1b2a80e56159cbgu/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v4/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpm_ijanq1/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_cabac6aa-97ca-11f0-a4c0-5ace1b2a80e56159cbgu/parcellation_warped.nii.gz
2025-09-22 15:43:45,508 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-09-22 15:43:47,025 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpu42glz8x/test.sqlite (multiple output)>
2025-09-22 15:43:47,202 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2025-09-22 15:43:47,202 - JUNIFER - INFO - Computing VBM_GM
2025-09-22 15:43:47,202 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-09-22 15:43:47,202 - JUNIFER - INFO - Parcellation parameters:
2025-09-22 15:43:47,202 - JUNIFER - INFO -      resolution: None
2025-09-22 15:43:47,202 - JUNIFER - INFO -      n_rois: 1000
2025-09-22 15:43:47,202 - JUNIFER - INFO -      yeo_networks: 7
2025-09-22 15:43:47,202 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-09-22 15:43:47,278 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v4/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-09-22 15:43:49,725 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-09-22 15:43:50,236 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpm_ijanq1/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_edaebc02-97ca-11f0-a4c0-5ace1b2a80e547lh8nf0/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpm_ijanq1/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_edaebc02-97ca-11f0-a4c0-5ace1b2a80e547lh8nf0/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v4/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpm_ijanq1/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_edaebc02-97ca-11f0-a4c0-5ace1b2a80e547lh8nf0/parcellation_warped.nii.gz
2025-09-22 15:44:45,101 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-09-22 15:44:46,633 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpu42glz8x/test.sqlite (multiple output)>
2025-09-22 15:44:46,818 - JUNIFER - INFO - Marker collection fitting done
2025-09-22 15:44:46,826 - JUNIFER - INFO - Getting element sub-10
2025-09-22 15:44:46,826 - JUNIFER - INFO - Fitting pipeline
2025-09-22 15:44:46,827 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0011_MR1/mwrc1OAS1_0011_MR1_mpr_anon_fslswapdim_bet.nii.gz
2025-09-22 15:44:46,827 - JUNIFER - INFO - VBM_GM is of type NIFTI
2025-09-22 15:44:46,828 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2025-09-22 15:44:46,828 - JUNIFER - INFO - Computing VBM_GM
2025-09-22 15:44:46,828 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-09-22 15:44:46,828 - JUNIFER - INFO - Parcellation parameters:
2025-09-22 15:44:46,828 - JUNIFER - INFO -      resolution: None
2025-09-22 15:44:46,828 - JUNIFER - INFO -      n_rois: 1000
2025-09-22 15:44:46,828 - JUNIFER - INFO -      yeo_networks: 7
2025-09-22 15:44:46,828 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-09-22 15:44:46,904 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v4/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-09-22 15:44:49,357 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-09-22 15:44:49,868 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmph158kwlp/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_1138917a-97cb-11f0-a4c0-5ace1b2a80e5f75rxkaw/prewarp_parcellation.nii.gz -r /tmp/junifer/tmph158kwlp/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_1138917a-97cb-11f0-a4c0-5ace1b2a80e5f75rxkaw/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v4/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmph158kwlp/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_1138917a-97cb-11f0-a4c0-5ace1b2a80e5f75rxkaw/parcellation_warped.nii.gz
2025-09-22 15:45:43,524 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-09-22 15:45:45,097 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpu42glz8x/test.sqlite (multiple output)>
2025-09-22 15:45:45,270 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2025-09-22 15:45:45,270 - JUNIFER - INFO - Computing VBM_GM
2025-09-22 15:45:45,270 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-09-22 15:45:45,270 - JUNIFER - INFO - Parcellation parameters:
2025-09-22 15:45:45,270 - JUNIFER - INFO -      resolution: None
2025-09-22 15:45:45,270 - JUNIFER - INFO -      n_rois: 1000
2025-09-22 15:45:45,270 - JUNIFER - INFO -      yeo_networks: 7
2025-09-22 15:45:45,270 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-09-22 15:45:45,346 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v4/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-09-22 15:45:47,785 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-09-22 15:45:48,296 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmph158kwlp/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_340eb1ca-97cb-11f0-a4c0-5ace1b2a80e5odo8bhrc/prewarp_parcellation.nii.gz -r /tmp/junifer/tmph158kwlp/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_340eb1ca-97cb-11f0-a4c0-5ace1b2a80e5odo8bhrc/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v4/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmph158kwlp/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_340eb1ca-97cb-11f0-a4c0-5ace1b2a80e5odo8bhrc/parcellation_warped.nii.gz
2025-09-22 15:46:42,753 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-09-22 15:46:44,338 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpu42glz8x/test.sqlite (multiple output)>
2025-09-22 15:46:44,515 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2025-09-22 15:46:44,516 - JUNIFER - INFO - Computing VBM_GM
2025-09-22 15:46:44,516 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-09-22 15:46:44,516 - JUNIFER - INFO - Parcellation parameters:
2025-09-22 15:46:44,516 - JUNIFER - INFO -      resolution: None
2025-09-22 15:46:44,516 - JUNIFER - INFO -      n_rois: 1000
2025-09-22 15:46:44,516 - JUNIFER - INFO -      yeo_networks: 7
2025-09-22 15:46:44,516 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-09-22 15:46:44,593 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v4/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-09-22 15:46:47,059 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-09-22 15:46:47,571 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmph158kwlp/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_575ee0e6-97cb-11f0-a4c0-5ace1b2a80e53q7dupzz/prewarp_parcellation.nii.gz -r /tmp/junifer/tmph158kwlp/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_575ee0e6-97cb-11f0-a4c0-5ace1b2a80e53q7dupzz/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v4/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmph158kwlp/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_575ee0e6-97cb-11f0-a4c0-5ace1b2a80e53q7dupzz/parcellation_warped.nii.gz
2025-09-22 15:47:41,897 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-09-22 15:47:43,505 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpu42glz8x/test.sqlite (multiple output)>
2025-09-22 15:47:43,688 - JUNIFER - INFO - Marker collection fitting done

import tempfile

import junifer.testing.registry  # noqa: F401
from junifer.api import run


datagrabber = {
    "kind": "OasisVBMTestingDataGrabber",
}

markers = [
    {
        "name": "Schaefer1000x7_TrimMean80",
        "kind": "ParcelAggregation",
        "parcellation": "Schaefer1000x7",
        "method": "trim_mean",
        "method_params": {"proportiontocut": 0.2},
    },
    {
        "name": "Schaefer1000x7_Mean",
        "kind": "ParcelAggregation",
        "parcellation": "Schaefer1000x7",
        "method": "mean",
    },
    {
        "name": "Schaefer1000x7_Std",
        "kind": "ParcelAggregation",
        "parcellation": "Schaefer1000x7",
        "method": "std",
    },
]

storage = {
    "kind": "SQLiteFeatureStorage",
}

with tempfile.TemporaryDirectory() as tmpdir:
    uri = f"{tmpdir}/test.sqlite"
    storage["uri"] = uri
    run(
        workdir="/tmp",
        datagrabber=datagrabber,
        markers=markers,
        storage=storage,
    )