8.3. UKB VBM GMD Extraction

Authors: Federico Raimondo

License: BSD 3 clause

2024-12-06 13:11:11,072 - JUNIFER - INFO - Registering OasisVBMTestingDataGrabber in datagrabber
2024-12-06 13:11:11,072 - JUNIFER - INFO - Registering SPMAuditoryTestingDataGrabber in datagrabber
2024-12-06 13:11:11,073 - JUNIFER - INFO - Registering PartlyCloudyTestingDataGrabber in datagrabber
2024-12-06 13:11:16,866 - JUNIFER - INFO - Registering ParcelAggregation in marker
2024-12-06 13:11:16,874 - JUNIFER - INFO - Registering SQLiteFeatureStorage in storage
2024-12-06 13:11:16,874 - JUNIFER - INFO - Validating Marker Collection
2024-12-06 13:11:16,874 - JUNIFER - INFO - DataGrabber output type: ['VBM_GM']
2024-12-06 13:11:16,874 - JUNIFER - INFO - Validating Data Reader:
2024-12-06 13:11:16,874 - JUNIFER - INFO - Data Reader output type: ['VBM_GM']
2024-12-06 13:11:16,875 - JUNIFER - INFO - Validating Marker: Schaefer1000x7_TrimMean80
2024-12-06 13:11:16,875 - JUNIFER - INFO - Marker output type: ['vector']
2024-12-06 13:11:16,875 - JUNIFER - INFO - Validating storage for Schaefer1000x7_TrimMean80
2024-12-06 13:11:16,875 - JUNIFER - INFO - Validating Marker: Schaefer1000x7_Mean
2024-12-06 13:11:16,875 - JUNIFER - INFO - Marker output type: ['vector']
2024-12-06 13:11:16,875 - JUNIFER - INFO - Validating storage for Schaefer1000x7_Mean
2024-12-06 13:11:16,875 - JUNIFER - INFO - Validating Marker: Schaefer1000x7_Std
2024-12-06 13:11:16,875 - JUNIFER - INFO - Marker output type: ['vector']
2024-12-06 13:11:16,875 - JUNIFER - INFO - Validating storage for Schaefer1000x7_Std

Added README.md to /github/home/nilearn_data


Dataset created in /github/home/nilearn_data/oasis1

Downloading data from https://www.nitrc.org/frs/download.php/6364/archive_dartel.tgz ...

Downloaded 19152896 of 905208634 bytes (2.1%,   46.3s remaining)
Downloaded 58384384 of 905208634 bytes (6.4%,   29.0s remaining)
Downloaded 98148352 of 905208634 bytes (10.8%,   24.8s remaining)
Downloaded 139214848 of 905208634 bytes (15.4%,   22.1s remaining)
Downloaded 180846592 of 905208634 bytes (20.0%,   20.1s remaining)
Downloaded 219734016 of 905208634 bytes (24.3%,   18.8s remaining)
Downloaded 260071424 of 905208634 bytes (28.7%,   17.4s remaining)
Downloaded 300900352 of 905208634 bytes (33.2%,   16.2s remaining)
Downloaded 340369408 of 905208634 bytes (37.6%,   15.0s remaining)
Downloaded 380592128 of 905208634 bytes (42.0%,   13.9s remaining)
Downloaded 422232064 of 905208634 bytes (46.6%,   12.6s remaining)
Downloaded 463716352 of 905208634 bytes (51.2%,   11.5s remaining)
Downloaded 504193024 of 905208634 bytes (55.7%,   10.4s remaining)
Downloaded 543662080 of 905208634 bytes (60.1%,    9.4s remaining)
Downloaded 584384512 of 905208634 bytes (64.6%,    8.3s remaining)
Downloaded 625655808 of 905208634 bytes (69.1%,    7.2s remaining)
Downloaded 665985024 of 905208634 bytes (73.6%,    6.1s remaining)
Downloaded 705101824 of 905208634 bytes (77.9%,    5.1s remaining)
Downloaded 743751680 of 905208634 bytes (82.2%,    4.1s remaining)
Downloaded 782811136 of 905208634 bytes (86.5%,    3.1s remaining)
Downloaded 822935552 of 905208634 bytes (90.9%,    2.1s remaining)
Downloaded 864280576 of 905208634 bytes (95.5%,    1.0s remaining)
Downloaded 904454144 of 905208634 bytes (99.9%,    0.0s remaining) ...done. (24 seconds, 0 min)
Extracting data from /github/home/nilearn_data/oasis1/7088b0bf88f5650db26e32ec3afdd589/archive_dartel.tgz..... done.
2024-12-06 13:11:46,462 - JUNIFER - INFO - Getting element sub-01
2024-12-06 13:11:46,462 - JUNIFER - INFO - Fitting pipeline
2024-12-06 13:11:46,462 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0001_MR1/mwrc1OAS1_0001_MR1_mpr_anon_fslswapdim_bet.nii.gz
2024-12-06 13:11:46,462 - JUNIFER - INFO - VBM_GM is of type NIFTI
2024-12-06 13:11:46,463 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2024-12-06 13:11:46,464 - JUNIFER - INFO - Computing VBM_GM
2024-12-06 13:11:46,464 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2024-12-06 13:11:46,464 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-12-06 13:11:46,464 - JUNIFER - INFO - Parcellation parameters:
2024-12-06 13:11:46,464 - JUNIFER - INFO -      resolution: None
2024-12-06 13:11:46,464 - JUNIFER - INFO -      n_rois: 1000
2024-12-06 13:11:46,464 - JUNIFER - INFO -      yeo_networks: 7
2024-12-06 13:11:46,464 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2024-12-06 13:11:46,464 - JUNIFER - INFO - At least one of the parcellation files are missing. Fetching using nilearn.

Added README.md to /github/home/junifer/data/parcellations


Dataset created in /github/home/junifer/data/parcellations/schaefer_2018

Downloading data from https://raw.githubusercontent.com/ThomasYeoLab/CBIG/v0.14.3-Update_Yeo2011_Schaefer2018_labelname/stable_projects/brain_parcellation/Schaefer2018_LocalGlobal/Parcellations/MNI/Schaefer2018_1000Parcels_7Networks_order.txt ...
 ...done. (0 seconds, 0 min)
Downloading data from https://raw.githubusercontent.com/ThomasYeoLab/CBIG/v0.14.3-Update_Yeo2011_Schaefer2018_labelname/stable_projects/brain_parcellation/Schaefer2018_LocalGlobal/Parcellations/MNI/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz ...
 ...done. (0 seconds, 0 min)
2024-12-06 13:11:46,979 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2024-12-06 13:11:47,261 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-12-06 13:11:48,383 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
Downloading https://templateflow.s3.amazonaws.com/tpl-MNI152Lin/tpl-MNI152Lin_res-01_T1w.nii.gz

  0%|          | 0.00/10.7M [00:00<?, ?B/s]
  1%|          | 69.6k/10.7M [00:00<00:21, 495kB/s]
  3%|▎         | 296k/10.7M [00:00<00:09, 1.15MB/s]
 12%|█▏        | 1.27M/10.7M [00:00<00:02, 3.77MB/s]
 47%|████▋     | 5.04M/10.7M [00:00<00:00, 12.8MB/s]
 87%|████████▋ | 9.23M/10.7M [00:00<00:00, 18.9MB/s]
100%|██████████| 10.7M/10.7M [00:00<00:00, 14.8MB/s]
2024-12-06 13:11:49,934 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp2idyh5jt/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a5c42d18-b3d3-11ef-9645-0242ac120002k3a2_1a7/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp2idyh5jt/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a5c42d18-b3d3-11ef-9645-0242ac120002k3a2_1a7/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmp2idyh5jt/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a5c42d18-b3d3-11ef-9645-0242ac120002k3a2_1a7/parcellation_warped.nii.gz
2024-12-06 13:13:11,908 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2024-12-06 13:13:13,414 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp0ymgq_18/test.sqlite (multiple output)>
2024-12-06 13:13:13,607 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2024-12-06 13:13:13,607 - JUNIFER - INFO - Computing VBM_GM
2024-12-06 13:13:13,607 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2024-12-06 13:13:13,607 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-12-06 13:13:13,607 - JUNIFER - INFO - Parcellation parameters:
2024-12-06 13:13:13,608 - JUNIFER - INFO -      resolution: None
2024-12-06 13:13:13,608 - JUNIFER - INFO -      n_rois: 1000
2024-12-06 13:13:13,608 - JUNIFER - INFO -      yeo_networks: 7
2024-12-06 13:13:13,608 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2024-12-06 13:13:13,610 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2024-12-06 13:13:13,891 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-12-06 13:13:15,031 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
2024-12-06 13:13:15,539 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp2idyh5jt/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_d966efac-b3d3-11ef-9645-0242ac1200020dx3yxz3/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp2idyh5jt/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_d966efac-b3d3-11ef-9645-0242ac1200020dx3yxz3/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmp2idyh5jt/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_d966efac-b3d3-11ef-9645-0242ac1200020dx3yxz3/parcellation_warped.nii.gz
2024-12-06 13:14:37,171 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2024-12-06 13:14:38,672 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp0ymgq_18/test.sqlite (multiple output)>
2024-12-06 13:14:38,858 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2024-12-06 13:14:38,858 - JUNIFER - INFO - Computing VBM_GM
2024-12-06 13:14:38,858 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2024-12-06 13:14:38,859 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-12-06 13:14:38,859 - JUNIFER - INFO - Parcellation parameters:
2024-12-06 13:14:38,859 - JUNIFER - INFO -      resolution: None
2024-12-06 13:14:38,859 - JUNIFER - INFO -      n_rois: 1000
2024-12-06 13:14:38,859 - JUNIFER - INFO -      yeo_networks: 7
2024-12-06 13:14:38,859 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2024-12-06 13:14:38,861 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2024-12-06 13:14:39,143 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-12-06 13:14:40,260 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
2024-12-06 13:14:40,767 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp2idyh5jt/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_0c375854-b3d4-11ef-9645-0242ac120002jys3r0o3/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp2idyh5jt/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_0c375854-b3d4-11ef-9645-0242ac120002jys3r0o3/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmp2idyh5jt/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_0c375854-b3d4-11ef-9645-0242ac120002jys3r0o3/parcellation_warped.nii.gz
2024-12-06 13:16:02,406 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2024-12-06 13:16:04,060 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp0ymgq_18/test.sqlite (multiple output)>
2024-12-06 13:16:04,247 - JUNIFER - INFO - Marker collection fitting done
2024-12-06 13:16:04,254 - JUNIFER - INFO - Getting element sub-02
2024-12-06 13:16:04,254 - JUNIFER - INFO - Fitting pipeline
2024-12-06 13:16:04,254 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0002_MR1/mwrc1OAS1_0002_MR1_mpr_anon_fslswapdim_bet.nii.gz
2024-12-06 13:16:04,254 - JUNIFER - INFO - VBM_GM is of type NIFTI
2024-12-06 13:16:04,255 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2024-12-06 13:16:04,255 - JUNIFER - INFO - Computing VBM_GM
2024-12-06 13:16:04,255 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2024-12-06 13:16:04,256 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-12-06 13:16:04,256 - JUNIFER - INFO - Parcellation parameters:
2024-12-06 13:16:04,256 - JUNIFER - INFO -      resolution: None
2024-12-06 13:16:04,256 - JUNIFER - INFO -      n_rois: 1000
2024-12-06 13:16:04,256 - JUNIFER - INFO -      yeo_networks: 7
2024-12-06 13:16:04,256 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2024-12-06 13:16:04,258 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2024-12-06 13:16:04,542 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-12-06 13:16:05,704 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
2024-12-06 13:16:06,216 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpbgpekftk/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_3f1e3184-b3d4-11ef-9645-0242ac1200025pj9vvqk/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpbgpekftk/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_3f1e3184-b3d4-11ef-9645-0242ac1200025pj9vvqk/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpbgpekftk/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_3f1e3184-b3d4-11ef-9645-0242ac1200025pj9vvqk/parcellation_warped.nii.gz
2024-12-06 13:17:28,455 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2024-12-06 13:17:29,947 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp0ymgq_18/test.sqlite (multiple output)>
2024-12-06 13:17:30,122 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2024-12-06 13:17:30,122 - JUNIFER - INFO - Computing VBM_GM
2024-12-06 13:17:30,123 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2024-12-06 13:17:30,123 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-12-06 13:17:30,123 - JUNIFER - INFO - Parcellation parameters:
2024-12-06 13:17:30,123 - JUNIFER - INFO -      resolution: None
2024-12-06 13:17:30,123 - JUNIFER - INFO -      n_rois: 1000
2024-12-06 13:17:30,123 - JUNIFER - INFO -      yeo_networks: 7
2024-12-06 13:17:30,123 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2024-12-06 13:17:30,125 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2024-12-06 13:17:30,402 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-12-06 13:17:31,554 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
2024-12-06 13:17:32,084 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpbgpekftk/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_724b7508-b3d4-11ef-9645-0242ac1200021orhsqjo/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpbgpekftk/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_724b7508-b3d4-11ef-9645-0242ac1200021orhsqjo/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpbgpekftk/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_724b7508-b3d4-11ef-9645-0242ac1200021orhsqjo/parcellation_warped.nii.gz
2024-12-06 13:18:53,429 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2024-12-06 13:18:54,916 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp0ymgq_18/test.sqlite (multiple output)>
2024-12-06 13:18:55,098 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2024-12-06 13:18:55,098 - JUNIFER - INFO - Computing VBM_GM
2024-12-06 13:18:55,098 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2024-12-06 13:18:55,098 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-12-06 13:18:55,098 - JUNIFER - INFO - Parcellation parameters:
2024-12-06 13:18:55,098 - JUNIFER - INFO -      resolution: None
2024-12-06 13:18:55,098 - JUNIFER - INFO -      n_rois: 1000
2024-12-06 13:18:55,099 - JUNIFER - INFO -      yeo_networks: 7
2024-12-06 13:18:55,099 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2024-12-06 13:18:55,101 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2024-12-06 13:18:55,378 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-12-06 13:18:56,491 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
2024-12-06 13:18:57,002 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpbgpekftk/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a4f1c304-b3d4-11ef-9645-0242ac120002rwrpxf58/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpbgpekftk/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a4f1c304-b3d4-11ef-9645-0242ac120002rwrpxf58/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpbgpekftk/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a4f1c304-b3d4-11ef-9645-0242ac120002rwrpxf58/parcellation_warped.nii.gz
2024-12-06 13:20:18,911 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2024-12-06 13:20:20,406 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp0ymgq_18/test.sqlite (multiple output)>
2024-12-06 13:20:20,588 - JUNIFER - INFO - Marker collection fitting done
2024-12-06 13:20:20,595 - JUNIFER - INFO - Getting element sub-03
2024-12-06 13:20:20,595 - JUNIFER - INFO - Fitting pipeline
2024-12-06 13:20:20,595 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0003_MR1/mwrc1OAS1_0003_MR1_mpr_anon_fslswapdim_bet.nii.gz
2024-12-06 13:20:20,595 - JUNIFER - INFO - VBM_GM is of type NIFTI
2024-12-06 13:20:20,596 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2024-12-06 13:20:20,596 - JUNIFER - INFO - Computing VBM_GM
2024-12-06 13:20:20,596 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2024-12-06 13:20:20,596 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-12-06 13:20:20,596 - JUNIFER - INFO - Parcellation parameters:
2024-12-06 13:20:20,596 - JUNIFER - INFO -      resolution: None
2024-12-06 13:20:20,596 - JUNIFER - INFO -      n_rois: 1000
2024-12-06 13:20:20,596 - JUNIFER - INFO -      yeo_networks: 7
2024-12-06 13:20:20,596 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2024-12-06 13:20:20,599 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2024-12-06 13:20:20,877 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-12-06 13:20:22,021 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
2024-12-06 13:20:22,531 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpl16j5mpw/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_d7e7d532-b3d4-11ef-9645-0242ac120002jt8pyfri/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpl16j5mpw/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_d7e7d532-b3d4-11ef-9645-0242ac120002jt8pyfri/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpl16j5mpw/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_d7e7d532-b3d4-11ef-9645-0242ac120002jt8pyfri/parcellation_warped.nii.gz
2024-12-06 13:21:43,928 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2024-12-06 13:21:45,450 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp0ymgq_18/test.sqlite (multiple output)>
2024-12-06 13:21:45,625 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2024-12-06 13:21:45,625 - JUNIFER - INFO - Computing VBM_GM
2024-12-06 13:21:45,625 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2024-12-06 13:21:45,625 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-12-06 13:21:45,625 - JUNIFER - INFO - Parcellation parameters:
2024-12-06 13:21:45,625 - JUNIFER - INFO -      resolution: None
2024-12-06 13:21:45,625 - JUNIFER - INFO -      n_rois: 1000
2024-12-06 13:21:45,625 - JUNIFER - INFO -      yeo_networks: 7
2024-12-06 13:21:45,625 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2024-12-06 13:21:45,627 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2024-12-06 13:21:45,906 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-12-06 13:21:47,061 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
2024-12-06 13:21:47,572 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpl16j5mpw/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_0a964234-b3d5-11ef-9645-0242ac120002avq6ga89/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpl16j5mpw/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_0a964234-b3d5-11ef-9645-0242ac120002avq6ga89/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpl16j5mpw/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_0a964234-b3d5-11ef-9645-0242ac120002avq6ga89/parcellation_warped.nii.gz
2024-12-06 13:23:08,572 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2024-12-06 13:23:10,107 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp0ymgq_18/test.sqlite (multiple output)>
2024-12-06 13:23:10,289 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2024-12-06 13:23:10,289 - JUNIFER - INFO - Computing VBM_GM
2024-12-06 13:23:10,289 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2024-12-06 13:23:10,289 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-12-06 13:23:10,289 - JUNIFER - INFO - Parcellation parameters:
2024-12-06 13:23:10,289 - JUNIFER - INFO -      resolution: None
2024-12-06 13:23:10,289 - JUNIFER - INFO -      n_rois: 1000
2024-12-06 13:23:10,289 - JUNIFER - INFO -      yeo_networks: 7
2024-12-06 13:23:10,289 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2024-12-06 13:23:10,292 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2024-12-06 13:23:10,570 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-12-06 13:23:11,709 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
2024-12-06 13:23:12,220 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpl16j5mpw/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_3d0cedf8-b3d5-11ef-9645-0242ac1200027104ws04/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpl16j5mpw/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_3d0cedf8-b3d5-11ef-9645-0242ac1200027104ws04/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpl16j5mpw/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_3d0cedf8-b3d5-11ef-9645-0242ac1200027104ws04/parcellation_warped.nii.gz
2024-12-06 13:24:34,239 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2024-12-06 13:24:35,736 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp0ymgq_18/test.sqlite (multiple output)>
2024-12-06 13:24:35,920 - JUNIFER - INFO - Marker collection fitting done
2024-12-06 13:24:35,927 - JUNIFER - INFO - Getting element sub-04
2024-12-06 13:24:35,927 - JUNIFER - INFO - Fitting pipeline
2024-12-06 13:24:35,927 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0004_MR1/mwrc1OAS1_0004_MR1_mpr_anon_fslswapdim_bet.nii.gz
2024-12-06 13:24:35,927 - JUNIFER - INFO - VBM_GM is of type NIFTI
2024-12-06 13:24:35,928 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2024-12-06 13:24:35,928 - JUNIFER - INFO - Computing VBM_GM
2024-12-06 13:24:35,928 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2024-12-06 13:24:35,928 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-12-06 13:24:35,928 - JUNIFER - INFO - Parcellation parameters:
2024-12-06 13:24:35,928 - JUNIFER - INFO -      resolution: None
2024-12-06 13:24:35,928 - JUNIFER - INFO -      n_rois: 1000
2024-12-06 13:24:35,928 - JUNIFER - INFO -      yeo_networks: 7
2024-12-06 13:24:35,928 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2024-12-06 13:24:35,931 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2024-12-06 13:24:36,209 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-12-06 13:24:37,351 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
2024-12-06 13:24:37,861 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpgl08ywv7/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_701859c6-b3d5-11ef-9645-0242ac1200028663cbg7/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpgl08ywv7/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_701859c6-b3d5-11ef-9645-0242ac1200028663cbg7/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpgl08ywv7/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_701859c6-b3d5-11ef-9645-0242ac1200028663cbg7/parcellation_warped.nii.gz
2024-12-06 13:25:59,263 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2024-12-06 13:26:00,823 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp0ymgq_18/test.sqlite (multiple output)>
2024-12-06 13:26:00,999 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2024-12-06 13:26:00,999 - JUNIFER - INFO - Computing VBM_GM
2024-12-06 13:26:01,000 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2024-12-06 13:26:01,000 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-12-06 13:26:01,000 - JUNIFER - INFO - Parcellation parameters:
2024-12-06 13:26:01,000 - JUNIFER - INFO -      resolution: None
2024-12-06 13:26:01,000 - JUNIFER - INFO -      n_rois: 1000
2024-12-06 13:26:01,000 - JUNIFER - INFO -      yeo_networks: 7
2024-12-06 13:26:01,000 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2024-12-06 13:26:01,002 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2024-12-06 13:26:01,282 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-12-06 13:26:02,435 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
2024-12-06 13:26:02,947 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpgl08ywv7/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a2cd7d7e-b3d5-11ef-9645-0242ac1200023jq1epg0/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpgl08ywv7/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a2cd7d7e-b3d5-11ef-9645-0242ac1200023jq1epg0/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpgl08ywv7/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a2cd7d7e-b3d5-11ef-9645-0242ac1200023jq1epg0/parcellation_warped.nii.gz
2024-12-06 13:27:25,227 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2024-12-06 13:27:26,730 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp0ymgq_18/test.sqlite (multiple output)>
2024-12-06 13:27:26,908 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2024-12-06 13:27:26,908 - JUNIFER - INFO - Computing VBM_GM
2024-12-06 13:27:26,908 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2024-12-06 13:27:26,908 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-12-06 13:27:26,908 - JUNIFER - INFO - Parcellation parameters:
2024-12-06 13:27:26,908 - JUNIFER - INFO -      resolution: None
2024-12-06 13:27:26,908 - JUNIFER - INFO -      n_rois: 1000
2024-12-06 13:27:26,908 - JUNIFER - INFO -      yeo_networks: 7
2024-12-06 13:27:26,908 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2024-12-06 13:27:26,910 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2024-12-06 13:27:27,188 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-12-06 13:27:28,277 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
2024-12-06 13:27:28,787 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpgl08ywv7/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_d601ca92-b3d5-11ef-9645-0242ac120002snb02ntf/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpgl08ywv7/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_d601ca92-b3d5-11ef-9645-0242ac120002snb02ntf/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpgl08ywv7/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_d601ca92-b3d5-11ef-9645-0242ac120002snb02ntf/parcellation_warped.nii.gz
2024-12-06 13:28:50,740 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2024-12-06 13:28:52,322 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp0ymgq_18/test.sqlite (multiple output)>
2024-12-06 13:28:52,509 - JUNIFER - INFO - Marker collection fitting done
2024-12-06 13:28:52,516 - JUNIFER - INFO - Getting element sub-05
2024-12-06 13:28:52,516 - JUNIFER - INFO - Fitting pipeline
2024-12-06 13:28:52,516 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0005_MR1/mwrc1OAS1_0005_MR1_mpr_anon_fslswapdim_bet.nii.gz
2024-12-06 13:28:52,516 - JUNIFER - INFO - VBM_GM is of type NIFTI
2024-12-06 13:28:52,517 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2024-12-06 13:28:52,517 - JUNIFER - INFO - Computing VBM_GM
2024-12-06 13:28:52,517 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2024-12-06 13:28:52,517 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-12-06 13:28:52,517 - JUNIFER - INFO - Parcellation parameters:
2024-12-06 13:28:52,517 - JUNIFER - INFO -      resolution: None
2024-12-06 13:28:52,518 - JUNIFER - INFO -      n_rois: 1000
2024-12-06 13:28:52,518 - JUNIFER - INFO -      yeo_networks: 7
2024-12-06 13:28:52,518 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2024-12-06 13:28:52,520 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2024-12-06 13:28:52,800 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-12-06 13:28:53,930 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
2024-12-06 13:28:54,441 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmppbtbvzv2/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_09090c2a-b3d6-11ef-9645-0242ac1200027ax2d73h/prewarp_parcellation.nii.gz -r /tmp/junifer/tmppbtbvzv2/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_09090c2a-b3d6-11ef-9645-0242ac1200027ax2d73h/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmppbtbvzv2/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_09090c2a-b3d6-11ef-9645-0242ac1200027ax2d73h/parcellation_warped.nii.gz
2024-12-06 13:30:16,672 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2024-12-06 13:30:18,287 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp0ymgq_18/test.sqlite (multiple output)>
2024-12-06 13:30:18,467 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2024-12-06 13:30:18,467 - JUNIFER - INFO - Computing VBM_GM
2024-12-06 13:30:18,467 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2024-12-06 13:30:18,468 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-12-06 13:30:18,468 - JUNIFER - INFO - Parcellation parameters:
2024-12-06 13:30:18,468 - JUNIFER - INFO -      resolution: None
2024-12-06 13:30:18,468 - JUNIFER - INFO -      n_rois: 1000
2024-12-06 13:30:18,468 - JUNIFER - INFO -      yeo_networks: 7
2024-12-06 13:30:18,468 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2024-12-06 13:30:18,470 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2024-12-06 13:30:18,750 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-12-06 13:30:19,886 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
2024-12-06 13:30:20,401 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmppbtbvzv2/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_3c43eeac-b3d6-11ef-9645-0242ac1200025kedekj1/prewarp_parcellation.nii.gz -r /tmp/junifer/tmppbtbvzv2/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_3c43eeac-b3d6-11ef-9645-0242ac1200025kedekj1/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmppbtbvzv2/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_3c43eeac-b3d6-11ef-9645-0242ac1200025kedekj1/parcellation_warped.nii.gz
2024-12-06 13:31:42,009 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2024-12-06 13:31:43,630 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp0ymgq_18/test.sqlite (multiple output)>
2024-12-06 13:31:43,813 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2024-12-06 13:31:43,813 - JUNIFER - INFO - Computing VBM_GM
2024-12-06 13:31:43,813 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2024-12-06 13:31:43,814 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-12-06 13:31:43,814 - JUNIFER - INFO - Parcellation parameters:
2024-12-06 13:31:43,814 - JUNIFER - INFO -      resolution: None
2024-12-06 13:31:43,814 - JUNIFER - INFO -      n_rois: 1000
2024-12-06 13:31:43,814 - JUNIFER - INFO -      yeo_networks: 7
2024-12-06 13:31:43,814 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2024-12-06 13:31:43,816 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2024-12-06 13:31:44,094 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-12-06 13:31:45,203 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
2024-12-06 13:31:45,713 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmppbtbvzv2/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_6f22909e-b3d6-11ef-9645-0242ac120002id5ufssb/prewarp_parcellation.nii.gz -r /tmp/junifer/tmppbtbvzv2/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_6f22909e-b3d6-11ef-9645-0242ac120002id5ufssb/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmppbtbvzv2/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_6f22909e-b3d6-11ef-9645-0242ac120002id5ufssb/parcellation_warped.nii.gz
2024-12-06 13:33:06,032 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2024-12-06 13:33:07,588 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp0ymgq_18/test.sqlite (multiple output)>
2024-12-06 13:33:07,774 - JUNIFER - INFO - Marker collection fitting done
2024-12-06 13:33:07,781 - JUNIFER - INFO - Getting element sub-06
2024-12-06 13:33:07,781 - JUNIFER - INFO - Fitting pipeline
2024-12-06 13:33:07,781 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0006_MR1/mwrc1OAS1_0006_MR1_mpr_anon_fslswapdim_bet.nii.gz
2024-12-06 13:33:07,781 - JUNIFER - INFO - VBM_GM is of type NIFTI
2024-12-06 13:33:07,782 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2024-12-06 13:33:07,783 - JUNIFER - INFO - Computing VBM_GM
2024-12-06 13:33:07,783 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2024-12-06 13:33:07,783 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-12-06 13:33:07,783 - JUNIFER - INFO - Parcellation parameters:
2024-12-06 13:33:07,783 - JUNIFER - INFO -      resolution: None
2024-12-06 13:33:07,783 - JUNIFER - INFO -      n_rois: 1000
2024-12-06 13:33:07,783 - JUNIFER - INFO -      yeo_networks: 7
2024-12-06 13:33:07,783 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2024-12-06 13:33:07,785 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2024-12-06 13:33:08,066 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-12-06 13:33:09,184 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
2024-12-06 13:33:09,695 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpoym28osr/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a12f8006-b3d6-11ef-9645-0242ac120002nag1_zry/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpoym28osr/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a12f8006-b3d6-11ef-9645-0242ac120002nag1_zry/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpoym28osr/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a12f8006-b3d6-11ef-9645-0242ac120002nag1_zry/parcellation_warped.nii.gz
2024-12-06 13:34:30,759 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2024-12-06 13:34:32,193 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp0ymgq_18/test.sqlite (multiple output)>
2024-12-06 13:34:32,365 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2024-12-06 13:34:32,365 - JUNIFER - INFO - Computing VBM_GM
2024-12-06 13:34:32,365 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2024-12-06 13:34:32,366 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-12-06 13:34:32,366 - JUNIFER - INFO - Parcellation parameters:
2024-12-06 13:34:32,366 - JUNIFER - INFO -      resolution: None
2024-12-06 13:34:32,366 - JUNIFER - INFO -      n_rois: 1000
2024-12-06 13:34:32,366 - JUNIFER - INFO -      yeo_networks: 7
2024-12-06 13:34:32,366 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2024-12-06 13:34:32,368 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2024-12-06 13:34:32,645 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-12-06 13:34:33,723 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
2024-12-06 13:34:34,232 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpoym28osr/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_d3994fb8-b3d6-11ef-9645-0242ac1200025t7cfdmm/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpoym28osr/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_d3994fb8-b3d6-11ef-9645-0242ac1200025t7cfdmm/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpoym28osr/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_d3994fb8-b3d6-11ef-9645-0242ac1200025t7cfdmm/parcellation_warped.nii.gz
2024-12-06 13:35:56,102 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2024-12-06 13:35:57,532 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp0ymgq_18/test.sqlite (multiple output)>
2024-12-06 13:35:57,710 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2024-12-06 13:35:57,710 - JUNIFER - INFO - Computing VBM_GM
2024-12-06 13:35:57,710 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2024-12-06 13:35:57,710 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-12-06 13:35:57,710 - JUNIFER - INFO - Parcellation parameters:
2024-12-06 13:35:57,710 - JUNIFER - INFO -      resolution: None
2024-12-06 13:35:57,710 - JUNIFER - INFO -      n_rois: 1000
2024-12-06 13:35:57,710 - JUNIFER - INFO -      yeo_networks: 7
2024-12-06 13:35:57,710 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2024-12-06 13:35:57,712 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2024-12-06 13:35:57,989 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-12-06 13:35:59,058 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
2024-12-06 13:35:59,568 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpoym28osr/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_0677c3f6-b3d7-11ef-9645-0242ac120002kbyhsf8s/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpoym28osr/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_0677c3f6-b3d7-11ef-9645-0242ac120002kbyhsf8s/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpoym28osr/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_0677c3f6-b3d7-11ef-9645-0242ac120002kbyhsf8s/parcellation_warped.nii.gz
2024-12-06 13:37:21,805 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2024-12-06 13:37:23,284 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp0ymgq_18/test.sqlite (multiple output)>
2024-12-06 13:37:23,467 - JUNIFER - INFO - Marker collection fitting done
2024-12-06 13:37:23,474 - JUNIFER - INFO - Getting element sub-07
2024-12-06 13:37:23,474 - JUNIFER - INFO - Fitting pipeline
2024-12-06 13:37:23,474 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0007_MR1/mwrc1OAS1_0007_MR1_mpr_anon_fslswapdim_bet.nii.gz
2024-12-06 13:37:23,474 - JUNIFER - INFO - VBM_GM is of type NIFTI
2024-12-06 13:37:23,475 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2024-12-06 13:37:23,475 - JUNIFER - INFO - Computing VBM_GM
2024-12-06 13:37:23,475 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2024-12-06 13:37:23,475 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-12-06 13:37:23,475 - JUNIFER - INFO - Parcellation parameters:
2024-12-06 13:37:23,475 - JUNIFER - INFO -      resolution: None
2024-12-06 13:37:23,475 - JUNIFER - INFO -      n_rois: 1000
2024-12-06 13:37:23,475 - JUNIFER - INFO -      yeo_networks: 7
2024-12-06 13:37:23,475 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2024-12-06 13:37:23,477 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2024-12-06 13:37:23,757 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-12-06 13:37:24,840 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
2024-12-06 13:37:25,349 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpo2aa6xrk/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_3996e41a-b3d7-11ef-9645-0242ac120002e0genpwg/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpo2aa6xrk/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_3996e41a-b3d7-11ef-9645-0242ac120002e0genpwg/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpo2aa6xrk/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_3996e41a-b3d7-11ef-9645-0242ac120002e0genpwg/parcellation_warped.nii.gz
2024-12-06 13:38:47,950 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2024-12-06 13:38:49,399 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp0ymgq_18/test.sqlite (multiple output)>
2024-12-06 13:38:49,587 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2024-12-06 13:38:49,587 - JUNIFER - INFO - Computing VBM_GM
2024-12-06 13:38:49,588 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2024-12-06 13:38:49,588 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-12-06 13:38:49,588 - JUNIFER - INFO - Parcellation parameters:
2024-12-06 13:38:49,588 - JUNIFER - INFO -      resolution: None
2024-12-06 13:38:49,588 - JUNIFER - INFO -      n_rois: 1000
2024-12-06 13:38:49,588 - JUNIFER - INFO -      yeo_networks: 7
2024-12-06 13:38:49,588 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2024-12-06 13:38:49,590 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2024-12-06 13:38:49,869 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-12-06 13:38:50,943 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
2024-12-06 13:38:51,458 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpo2aa6xrk/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_6cea9f46-b3d7-11ef-9645-0242ac120002x8uhkdtn/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpo2aa6xrk/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_6cea9f46-b3d7-11ef-9645-0242ac120002x8uhkdtn/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpo2aa6xrk/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_6cea9f46-b3d7-11ef-9645-0242ac120002x8uhkdtn/parcellation_warped.nii.gz
2024-12-06 13:40:15,366 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2024-12-06 13:40:16,893 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp0ymgq_18/test.sqlite (multiple output)>
2024-12-06 13:40:17,073 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2024-12-06 13:40:17,073 - JUNIFER - INFO - Computing VBM_GM
2024-12-06 13:40:17,073 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2024-12-06 13:40:17,073 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-12-06 13:40:17,073 - JUNIFER - INFO - Parcellation parameters:
2024-12-06 13:40:17,073 - JUNIFER - INFO -      resolution: None
2024-12-06 13:40:17,073 - JUNIFER - INFO -      n_rois: 1000
2024-12-06 13:40:17,073 - JUNIFER - INFO -      yeo_networks: 7
2024-12-06 13:40:17,074 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2024-12-06 13:40:17,076 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2024-12-06 13:40:17,356 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-12-06 13:40:18,442 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
2024-12-06 13:40:18,953 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpo2aa6xrk/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a1100374-b3d7-11ef-9645-0242ac1200020mwtukbd/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpo2aa6xrk/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a1100374-b3d7-11ef-9645-0242ac1200020mwtukbd/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpo2aa6xrk/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a1100374-b3d7-11ef-9645-0242ac1200020mwtukbd/parcellation_warped.nii.gz
2024-12-06 13:41:41,351 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2024-12-06 13:41:42,905 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp0ymgq_18/test.sqlite (multiple output)>
2024-12-06 13:41:43,090 - JUNIFER - INFO - Marker collection fitting done
2024-12-06 13:41:43,097 - JUNIFER - INFO - Getting element sub-08
2024-12-06 13:41:43,097 - JUNIFER - INFO - Fitting pipeline
2024-12-06 13:41:43,097 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0009_MR1/mwrc1OAS1_0009_MR1_mpr_anon_fslswapdim_bet.nii.gz
2024-12-06 13:41:43,097 - JUNIFER - INFO - VBM_GM is of type NIFTI
2024-12-06 13:41:43,098 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2024-12-06 13:41:43,099 - JUNIFER - INFO - Computing VBM_GM
2024-12-06 13:41:43,099 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2024-12-06 13:41:43,099 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-12-06 13:41:43,099 - JUNIFER - INFO - Parcellation parameters:
2024-12-06 13:41:43,099 - JUNIFER - INFO -      resolution: None
2024-12-06 13:41:43,099 - JUNIFER - INFO -      n_rois: 1000
2024-12-06 13:41:43,099 - JUNIFER - INFO -      yeo_networks: 7
2024-12-06 13:41:43,099 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2024-12-06 13:41:43,101 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2024-12-06 13:41:43,380 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-12-06 13:41:44,493 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
2024-12-06 13:41:45,003 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpifspnpz3/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_d45639ce-b3d7-11ef-9645-0242ac120002foscfug_/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpifspnpz3/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_d45639ce-b3d7-11ef-9645-0242ac120002foscfug_/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpifspnpz3/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_d45639ce-b3d7-11ef-9645-0242ac120002foscfug_/parcellation_warped.nii.gz
2024-12-06 13:43:06,726 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2024-12-06 13:43:08,297 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp0ymgq_18/test.sqlite (multiple output)>
2024-12-06 13:43:08,473 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2024-12-06 13:43:08,473 - JUNIFER - INFO - Computing VBM_GM
2024-12-06 13:43:08,473 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2024-12-06 13:43:08,473 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-12-06 13:43:08,473 - JUNIFER - INFO - Parcellation parameters:
2024-12-06 13:43:08,473 - JUNIFER - INFO -      resolution: None
2024-12-06 13:43:08,473 - JUNIFER - INFO -      n_rois: 1000
2024-12-06 13:43:08,473 - JUNIFER - INFO -      yeo_networks: 7
2024-12-06 13:43:08,473 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2024-12-06 13:43:08,476 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2024-12-06 13:43:08,754 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-12-06 13:43:09,851 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
2024-12-06 13:43:10,362 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpifspnpz3/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_07394e76-b3d8-11ef-9645-0242ac120002v3gpw1il/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpifspnpz3/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_07394e76-b3d8-11ef-9645-0242ac120002v3gpw1il/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpifspnpz3/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_07394e76-b3d8-11ef-9645-0242ac120002v3gpw1il/parcellation_warped.nii.gz
2024-12-06 13:44:32,309 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2024-12-06 13:44:33,820 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp0ymgq_18/test.sqlite (multiple output)>
2024-12-06 13:44:34,001 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2024-12-06 13:44:34,001 - JUNIFER - INFO - Computing VBM_GM
2024-12-06 13:44:34,001 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2024-12-06 13:44:34,001 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-12-06 13:44:34,001 - JUNIFER - INFO - Parcellation parameters:
2024-12-06 13:44:34,001 - JUNIFER - INFO -      resolution: None
2024-12-06 13:44:34,001 - JUNIFER - INFO -      n_rois: 1000
2024-12-06 13:44:34,001 - JUNIFER - INFO -      yeo_networks: 7
2024-12-06 13:44:34,001 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2024-12-06 13:44:34,004 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2024-12-06 13:44:34,283 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-12-06 13:44:35,385 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
2024-12-06 13:44:35,894 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpifspnpz3/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_3a341950-b3d8-11ef-9645-0242ac120002_guw4t5n/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpifspnpz3/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_3a341950-b3d8-11ef-9645-0242ac120002_guw4t5n/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpifspnpz3/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_3a341950-b3d8-11ef-9645-0242ac120002_guw4t5n/parcellation_warped.nii.gz
2024-12-06 13:45:57,927 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2024-12-06 13:45:59,439 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp0ymgq_18/test.sqlite (multiple output)>
2024-12-06 13:45:59,629 - JUNIFER - INFO - Marker collection fitting done
2024-12-06 13:45:59,636 - JUNIFER - INFO - Getting element sub-09
2024-12-06 13:45:59,636 - JUNIFER - INFO - Fitting pipeline
2024-12-06 13:45:59,637 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0010_MR1/mwrc1OAS1_0010_MR1_mpr_anon_fslswapdim_bet.nii.gz
2024-12-06 13:45:59,637 - JUNIFER - INFO - VBM_GM is of type NIFTI
2024-12-06 13:45:59,638 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2024-12-06 13:45:59,638 - JUNIFER - INFO - Computing VBM_GM
2024-12-06 13:45:59,638 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2024-12-06 13:45:59,638 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-12-06 13:45:59,638 - JUNIFER - INFO - Parcellation parameters:
2024-12-06 13:45:59,638 - JUNIFER - INFO -      resolution: None
2024-12-06 13:45:59,638 - JUNIFER - INFO -      n_rois: 1000
2024-12-06 13:45:59,638 - JUNIFER - INFO -      yeo_networks: 7
2024-12-06 13:45:59,638 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2024-12-06 13:45:59,640 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2024-12-06 13:45:59,919 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-12-06 13:46:01,031 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
2024-12-06 13:46:01,545 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpc072d_d6/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_6d3efd1a-b3d8-11ef-9645-0242ac120002l0ylh4iv/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpc072d_d6/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_6d3efd1a-b3d8-11ef-9645-0242ac120002l0ylh4iv/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpc072d_d6/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_6d3efd1a-b3d8-11ef-9645-0242ac120002l0ylh4iv/parcellation_warped.nii.gz
2024-12-06 13:47:23,514 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2024-12-06 13:47:25,051 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp0ymgq_18/test.sqlite (multiple output)>
2024-12-06 13:47:25,223 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2024-12-06 13:47:25,223 - JUNIFER - INFO - Computing VBM_GM
2024-12-06 13:47:25,223 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2024-12-06 13:47:25,223 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-12-06 13:47:25,223 - JUNIFER - INFO - Parcellation parameters:
2024-12-06 13:47:25,223 - JUNIFER - INFO -      resolution: None
2024-12-06 13:47:25,223 - JUNIFER - INFO -      n_rois: 1000
2024-12-06 13:47:25,223 - JUNIFER - INFO -      yeo_networks: 7
2024-12-06 13:47:25,223 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2024-12-06 13:47:25,225 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2024-12-06 13:47:25,500 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-12-06 13:47:26,581 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
2024-12-06 13:47:27,091 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpc072d_d6/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a041afc8-b3d8-11ef-9645-0242ac120002clldluh2/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpc072d_d6/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a041afc8-b3d8-11ef-9645-0242ac120002clldluh2/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpc072d_d6/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a041afc8-b3d8-11ef-9645-0242ac120002clldluh2/parcellation_warped.nii.gz
2024-12-06 13:48:48,830 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2024-12-06 13:48:50,262 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp0ymgq_18/test.sqlite (multiple output)>
2024-12-06 13:48:50,439 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2024-12-06 13:48:50,439 - JUNIFER - INFO - Computing VBM_GM
2024-12-06 13:48:50,439 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2024-12-06 13:48:50,439 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-12-06 13:48:50,439 - JUNIFER - INFO - Parcellation parameters:
2024-12-06 13:48:50,439 - JUNIFER - INFO -      resolution: None
2024-12-06 13:48:50,439 - JUNIFER - INFO -      n_rois: 1000
2024-12-06 13:48:50,439 - JUNIFER - INFO -      yeo_networks: 7
2024-12-06 13:48:50,439 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2024-12-06 13:48:50,442 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2024-12-06 13:48:50,717 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-12-06 13:48:51,787 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
2024-12-06 13:48:52,296 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpc072d_d6/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_d30cc294-b3d8-11ef-9645-0242ac1200021foxm3i7/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpc072d_d6/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_d30cc294-b3d8-11ef-9645-0242ac1200021foxm3i7/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpc072d_d6/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_d30cc294-b3d8-11ef-9645-0242ac1200021foxm3i7/parcellation_warped.nii.gz
2024-12-06 13:50:14,489 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2024-12-06 13:50:15,936 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp0ymgq_18/test.sqlite (multiple output)>
2024-12-06 13:50:16,116 - JUNIFER - INFO - Marker collection fitting done
2024-12-06 13:50:16,123 - JUNIFER - INFO - Getting element sub-10
2024-12-06 13:50:16,123 - JUNIFER - INFO - Fitting pipeline
2024-12-06 13:50:16,123 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0011_MR1/mwrc1OAS1_0011_MR1_mpr_anon_fslswapdim_bet.nii.gz
2024-12-06 13:50:16,123 - JUNIFER - INFO - VBM_GM is of type NIFTI
2024-12-06 13:50:16,124 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2024-12-06 13:50:16,124 - JUNIFER - INFO - Computing VBM_GM
2024-12-06 13:50:16,124 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2024-12-06 13:50:16,124 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-12-06 13:50:16,124 - JUNIFER - INFO - Parcellation parameters:
2024-12-06 13:50:16,124 - JUNIFER - INFO -      resolution: None
2024-12-06 13:50:16,124 - JUNIFER - INFO -      n_rois: 1000
2024-12-06 13:50:16,124 - JUNIFER - INFO -      yeo_networks: 7
2024-12-06 13:50:16,125 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2024-12-06 13:50:16,127 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2024-12-06 13:50:16,403 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-12-06 13:50:17,478 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
2024-12-06 13:50:17,989 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpqxbkwr6t/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_061f66b4-b3d9-11ef-9645-0242ac120002dhx5iwsx/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpqxbkwr6t/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_061f66b4-b3d9-11ef-9645-0242ac120002dhx5iwsx/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpqxbkwr6t/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_061f66b4-b3d9-11ef-9645-0242ac120002dhx5iwsx/parcellation_warped.nii.gz
2024-12-06 13:51:39,924 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2024-12-06 13:51:41,401 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp0ymgq_18/test.sqlite (multiple output)>
2024-12-06 13:51:41,573 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2024-12-06 13:51:41,573 - JUNIFER - INFO - Computing VBM_GM
2024-12-06 13:51:41,573 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2024-12-06 13:51:41,573 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-12-06 13:51:41,573 - JUNIFER - INFO - Parcellation parameters:
2024-12-06 13:51:41,573 - JUNIFER - INFO -      resolution: None
2024-12-06 13:51:41,573 - JUNIFER - INFO -      n_rois: 1000
2024-12-06 13:51:41,573 - JUNIFER - INFO -      yeo_networks: 7
2024-12-06 13:51:41,573 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2024-12-06 13:51:41,575 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2024-12-06 13:51:41,853 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-12-06 13:51:42,937 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
2024-12-06 13:51:43,446 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpqxbkwr6t/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_390e135e-b3d9-11ef-9645-0242ac120002d2p7us7z/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpqxbkwr6t/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_390e135e-b3d9-11ef-9645-0242ac120002d2p7us7z/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpqxbkwr6t/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_390e135e-b3d9-11ef-9645-0242ac120002d2p7us7z/parcellation_warped.nii.gz
2024-12-06 13:53:05,131 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2024-12-06 13:53:06,691 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp0ymgq_18/test.sqlite (multiple output)>
2024-12-06 13:53:06,874 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2024-12-06 13:53:06,874 - JUNIFER - INFO - Computing VBM_GM
2024-12-06 13:53:06,874 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2024-12-06 13:53:06,875 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-12-06 13:53:06,875 - JUNIFER - INFO - Parcellation parameters:
2024-12-06 13:53:06,875 - JUNIFER - INFO -      resolution: None
2024-12-06 13:53:06,875 - JUNIFER - INFO -      n_rois: 1000
2024-12-06 13:53:06,875 - JUNIFER - INFO -      yeo_networks: 7
2024-12-06 13:53:06,875 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2024-12-06 13:53:06,877 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2024-12-06 13:53:07,157 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-12-06 13:53:08,269 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
2024-12-06 13:53:08,779 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpqxbkwr6t/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_6be65e08-b3d9-11ef-9645-0242ac120002yzpzv093/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpqxbkwr6t/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_6be65e08-b3d9-11ef-9645-0242ac120002yzpzv093/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpqxbkwr6t/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_6be65e08-b3d9-11ef-9645-0242ac120002yzpzv093/parcellation_warped.nii.gz
2024-12-06 13:54:31,336 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2024-12-06 13:54:32,870 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp0ymgq_18/test.sqlite (multiple output)>
2024-12-06 13:54:33,058 - JUNIFER - INFO - Marker collection fitting done

import tempfile

import junifer.testing.registry  # noqa: F401
from junifer.api import run


datagrabber = {
    "kind": "OasisVBMTestingDataGrabber",
}

markers = [
    {
        "name": "Schaefer1000x7_TrimMean80",
        "kind": "ParcelAggregation",
        "parcellation": "Schaefer1000x7",
        "method": "trim_mean",
        "method_params": {"proportiontocut": 0.2},
    },
    {
        "name": "Schaefer1000x7_Mean",
        "kind": "ParcelAggregation",
        "parcellation": "Schaefer1000x7",
        "method": "mean",
    },
    {
        "name": "Schaefer1000x7_Std",
        "kind": "ParcelAggregation",
        "parcellation": "Schaefer1000x7",
        "method": "std",
    },
]

storage = {
    "kind": "SQLiteFeatureStorage",
}

with tempfile.TemporaryDirectory() as tmpdir:
    uri = f"{tmpdir}/test.sqlite"
    storage["uri"] = uri
    run(
        workdir="/tmp",
        datagrabber=datagrabber,
        markers=markers,
        storage=storage,
    )