.. DO NOT EDIT.
.. THIS FILE WAS AUTOMATICALLY GENERATED BY SPHINX-GALLERY.
.. TO MAKE CHANGES, EDIT THE SOURCE PYTHON FILE:
.. "auto_examples/run_run_gmd_mean.py"
.. LINE NUMBERS ARE GIVEN BELOW.

.. only:: html

    .. note::
        :class: sphx-glr-download-link-note

        :ref:`Go to the end <sphx_glr_download_auto_examples_run_run_gmd_mean.py>`
        to download the full example code.

.. rst-class:: sphx-glr-example-title

.. _sphx_glr_auto_examples_run_run_gmd_mean.py:


UKB VBM GMD Extraction
======================

Authors: Federico Raimondo

License: BSD 3 clause

.. GENERATED FROM PYTHON SOURCE LINES 9-54




.. rst-class:: sphx-glr-script-out

 .. code-block:: none

    2024-12-06 13:11:11,072 - JUNIFER - INFO - Registering OasisVBMTestingDataGrabber in datagrabber
    2024-12-06 13:11:11,072 - JUNIFER - INFO - Registering SPMAuditoryTestingDataGrabber in datagrabber
    2024-12-06 13:11:11,073 - JUNIFER - INFO - Registering PartlyCloudyTestingDataGrabber in datagrabber
    2024-12-06 13:11:16,866 - JUNIFER - INFO - Registering ParcelAggregation in marker
    2024-12-06 13:11:16,874 - JUNIFER - INFO - Registering SQLiteFeatureStorage in storage
    2024-12-06 13:11:16,874 - JUNIFER - INFO - Validating Marker Collection
    2024-12-06 13:11:16,874 - JUNIFER - INFO - DataGrabber output type: ['VBM_GM']
    2024-12-06 13:11:16,874 - JUNIFER - INFO - Validating Data Reader:
    2024-12-06 13:11:16,874 - JUNIFER - INFO - Data Reader output type: ['VBM_GM']
    2024-12-06 13:11:16,875 - JUNIFER - INFO - Validating Marker: Schaefer1000x7_TrimMean80
    2024-12-06 13:11:16,875 - JUNIFER - INFO - Marker output type: ['vector']
    2024-12-06 13:11:16,875 - JUNIFER - INFO - Validating storage for Schaefer1000x7_TrimMean80
    2024-12-06 13:11:16,875 - JUNIFER - INFO - Validating Marker: Schaefer1000x7_Mean
    2024-12-06 13:11:16,875 - JUNIFER - INFO - Marker output type: ['vector']
    2024-12-06 13:11:16,875 - JUNIFER - INFO - Validating storage for Schaefer1000x7_Mean
    2024-12-06 13:11:16,875 - JUNIFER - INFO - Validating Marker: Schaefer1000x7_Std
    2024-12-06 13:11:16,875 - JUNIFER - INFO - Marker output type: ['vector']
    2024-12-06 13:11:16,875 - JUNIFER - INFO - Validating storage for Schaefer1000x7_Std

    Added README.md to /github/home/nilearn_data


    Dataset created in /github/home/nilearn_data/oasis1

    Downloading data from https://www.nitrc.org/frs/download.php/6364/archive_dartel.tgz ...

    Downloaded 19152896 of 905208634 bytes (2.1%,   46.3s remaining)
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    Downloaded 864280576 of 905208634 bytes (95.5%,    1.0s remaining)
    Downloaded 904454144 of 905208634 bytes (99.9%,    0.0s remaining) ...done. (24 seconds, 0 min)
    Extracting data from /github/home/nilearn_data/oasis1/7088b0bf88f5650db26e32ec3afdd589/archive_dartel.tgz..... done.
    2024-12-06 13:11:46,462 - JUNIFER - INFO - Getting element sub-01
    2024-12-06 13:11:46,462 - JUNIFER - INFO - Fitting pipeline
    2024-12-06 13:11:46,462 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0001_MR1/mwrc1OAS1_0001_MR1_mpr_anon_fslswapdim_bet.nii.gz
    2024-12-06 13:11:46,462 - JUNIFER - INFO - VBM_GM is of type NIFTI
    2024-12-06 13:11:46,463 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
    2024-12-06 13:11:46,464 - JUNIFER - INFO - Computing VBM_GM
    2024-12-06 13:11:46,464 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
    2024-12-06 13:11:46,464 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
    2024-12-06 13:11:46,464 - JUNIFER - INFO - Parcellation parameters:
    2024-12-06 13:11:46,464 - JUNIFER - INFO -      resolution: None
    2024-12-06 13:11:46,464 - JUNIFER - INFO -      n_rois: 1000
    2024-12-06 13:11:46,464 - JUNIFER - INFO -      yeo_networks: 7
    2024-12-06 13:11:46,464 - JUNIFER - INFO - Resolution set to None, using highest resolution.
    2024-12-06 13:11:46,464 - JUNIFER - INFO - At least one of the parcellation files are missing. Fetching using nilearn.

    Added README.md to /github/home/junifer/data/parcellations


    Dataset created in /github/home/junifer/data/parcellations/schaefer_2018

    Downloading data from https://raw.githubusercontent.com/ThomasYeoLab/CBIG/v0.14.3-Update_Yeo2011_Schaefer2018_labelname/stable_projects/brain_parcellation/Schaefer2018_LocalGlobal/Parcellations/MNI/Schaefer2018_1000Parcels_7Networks_order.txt ...
     ...done. (0 seconds, 0 min)
    Downloading data from https://raw.githubusercontent.com/ThomasYeoLab/CBIG/v0.14.3-Update_Yeo2011_Schaefer2018_labelname/stable_projects/brain_parcellation/Schaefer2018_LocalGlobal/Parcellations/MNI/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz ...
     ...done. (0 seconds, 0 min)
    2024-12-06 13:11:46,979 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
    2024-12-06 13:11:47,261 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
    2024-12-06 13:11:48,383 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
    Downloading https://templateflow.s3.amazonaws.com/tpl-MNI152Lin/tpl-MNI152Lin_res-01_T1w.nii.gz

      0%|          | 0.00/10.7M [00:00<?, ?B/s]
      1%|          | 69.6k/10.7M [00:00<00:21, 495kB/s]
      3%|▎         | 296k/10.7M [00:00<00:09, 1.15MB/s]
     12%|█▏        | 1.27M/10.7M [00:00<00:02, 3.77MB/s]
     47%|████▋     | 5.04M/10.7M [00:00<00:00, 12.8MB/s]
     87%|████████▋ | 9.23M/10.7M [00:00<00:00, 18.9MB/s]
    100%|██████████| 10.7M/10.7M [00:00<00:00, 14.8MB/s]
    2024-12-06 13:11:49,934 - JUNIFER - INFO - antsApplyTransforms command to be executed:
    antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp2idyh5jt/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a5c42d18-b3d3-11ef-9645-0242ac120002k3a2_1a7/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp2idyh5jt/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a5c42d18-b3d3-11ef-9645-0242ac120002k3a2_1a7/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmp2idyh5jt/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a5c42d18-b3d3-11ef-9645-0242ac120002k3a2_1a7/parcellation_warped.nii.gz
    2024-12-06 13:13:11,908 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

    2024-12-06 13:13:13,414 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp0ymgq_18/test.sqlite (multiple output)>
    2024-12-06 13:13:13,607 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
    2024-12-06 13:13:13,607 - JUNIFER - INFO - Computing VBM_GM
    2024-12-06 13:13:13,607 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
    2024-12-06 13:13:13,607 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
    2024-12-06 13:13:13,607 - JUNIFER - INFO - Parcellation parameters:
    2024-12-06 13:13:13,608 - JUNIFER - INFO -      resolution: None
    2024-12-06 13:13:13,608 - JUNIFER - INFO -      n_rois: 1000
    2024-12-06 13:13:13,608 - JUNIFER - INFO -      yeo_networks: 7
    2024-12-06 13:13:13,608 - JUNIFER - INFO - Resolution set to None, using highest resolution.
    2024-12-06 13:13:13,610 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
    2024-12-06 13:13:13,891 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
    2024-12-06 13:13:15,031 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
    2024-12-06 13:13:15,539 - JUNIFER - INFO - antsApplyTransforms command to be executed:
    antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp2idyh5jt/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_d966efac-b3d3-11ef-9645-0242ac1200020dx3yxz3/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp2idyh5jt/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_d966efac-b3d3-11ef-9645-0242ac1200020dx3yxz3/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmp2idyh5jt/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_d966efac-b3d3-11ef-9645-0242ac1200020dx3yxz3/parcellation_warped.nii.gz
    2024-12-06 13:14:37,171 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

    2024-12-06 13:14:38,672 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp0ymgq_18/test.sqlite (multiple output)>
    2024-12-06 13:14:38,858 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
    2024-12-06 13:14:38,858 - JUNIFER - INFO - Computing VBM_GM
    2024-12-06 13:14:38,858 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
    2024-12-06 13:14:38,859 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
    2024-12-06 13:14:38,859 - JUNIFER - INFO - Parcellation parameters:
    2024-12-06 13:14:38,859 - JUNIFER - INFO -      resolution: None
    2024-12-06 13:14:38,859 - JUNIFER - INFO -      n_rois: 1000
    2024-12-06 13:14:38,859 - JUNIFER - INFO -      yeo_networks: 7
    2024-12-06 13:14:38,859 - JUNIFER - INFO - Resolution set to None, using highest resolution.
    2024-12-06 13:14:38,861 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
    2024-12-06 13:14:39,143 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
    2024-12-06 13:14:40,260 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
    2024-12-06 13:14:40,767 - JUNIFER - INFO - antsApplyTransforms command to be executed:
    antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp2idyh5jt/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_0c375854-b3d4-11ef-9645-0242ac120002jys3r0o3/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp2idyh5jt/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_0c375854-b3d4-11ef-9645-0242ac120002jys3r0o3/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmp2idyh5jt/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_0c375854-b3d4-11ef-9645-0242ac120002jys3r0o3/parcellation_warped.nii.gz
    2024-12-06 13:16:02,406 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

    2024-12-06 13:16:04,060 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp0ymgq_18/test.sqlite (multiple output)>
    2024-12-06 13:16:04,247 - JUNIFER - INFO - Marker collection fitting done
    2024-12-06 13:16:04,254 - JUNIFER - INFO - Getting element sub-02
    2024-12-06 13:16:04,254 - JUNIFER - INFO - Fitting pipeline
    2024-12-06 13:16:04,254 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0002_MR1/mwrc1OAS1_0002_MR1_mpr_anon_fslswapdim_bet.nii.gz
    2024-12-06 13:16:04,254 - JUNIFER - INFO - VBM_GM is of type NIFTI
    2024-12-06 13:16:04,255 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
    2024-12-06 13:16:04,255 - JUNIFER - INFO - Computing VBM_GM
    2024-12-06 13:16:04,255 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
    2024-12-06 13:16:04,256 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
    2024-12-06 13:16:04,256 - JUNIFER - INFO - Parcellation parameters:
    2024-12-06 13:16:04,256 - JUNIFER - INFO -      resolution: None
    2024-12-06 13:16:04,256 - JUNIFER - INFO -      n_rois: 1000
    2024-12-06 13:16:04,256 - JUNIFER - INFO -      yeo_networks: 7
    2024-12-06 13:16:04,256 - JUNIFER - INFO - Resolution set to None, using highest resolution.
    2024-12-06 13:16:04,258 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
    2024-12-06 13:16:04,542 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
    2024-12-06 13:16:05,704 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
    2024-12-06 13:16:06,216 - JUNIFER - INFO - antsApplyTransforms command to be executed:
    antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpbgpekftk/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_3f1e3184-b3d4-11ef-9645-0242ac1200025pj9vvqk/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpbgpekftk/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_3f1e3184-b3d4-11ef-9645-0242ac1200025pj9vvqk/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpbgpekftk/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_3f1e3184-b3d4-11ef-9645-0242ac1200025pj9vvqk/parcellation_warped.nii.gz
    2024-12-06 13:17:28,455 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

    2024-12-06 13:17:29,947 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp0ymgq_18/test.sqlite (multiple output)>
    2024-12-06 13:17:30,122 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
    2024-12-06 13:17:30,122 - JUNIFER - INFO - Computing VBM_GM
    2024-12-06 13:17:30,123 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
    2024-12-06 13:17:30,123 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
    2024-12-06 13:17:30,123 - JUNIFER - INFO - Parcellation parameters:
    2024-12-06 13:17:30,123 - JUNIFER - INFO -      resolution: None
    2024-12-06 13:17:30,123 - JUNIFER - INFO -      n_rois: 1000
    2024-12-06 13:17:30,123 - JUNIFER - INFO -      yeo_networks: 7
    2024-12-06 13:17:30,123 - JUNIFER - INFO - Resolution set to None, using highest resolution.
    2024-12-06 13:17:30,125 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
    2024-12-06 13:17:30,402 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
    2024-12-06 13:17:31,554 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
    2024-12-06 13:17:32,084 - JUNIFER - INFO - antsApplyTransforms command to be executed:
    antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpbgpekftk/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_724b7508-b3d4-11ef-9645-0242ac1200021orhsqjo/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpbgpekftk/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_724b7508-b3d4-11ef-9645-0242ac1200021orhsqjo/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpbgpekftk/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_724b7508-b3d4-11ef-9645-0242ac1200021orhsqjo/parcellation_warped.nii.gz
    2024-12-06 13:18:53,429 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

    2024-12-06 13:18:54,916 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp0ymgq_18/test.sqlite (multiple output)>
    2024-12-06 13:18:55,098 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
    2024-12-06 13:18:55,098 - JUNIFER - INFO - Computing VBM_GM
    2024-12-06 13:18:55,098 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
    2024-12-06 13:18:55,098 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
    2024-12-06 13:18:55,098 - JUNIFER - INFO - Parcellation parameters:
    2024-12-06 13:18:55,098 - JUNIFER - INFO -      resolution: None
    2024-12-06 13:18:55,098 - JUNIFER - INFO -      n_rois: 1000
    2024-12-06 13:18:55,099 - JUNIFER - INFO -      yeo_networks: 7
    2024-12-06 13:18:55,099 - JUNIFER - INFO - Resolution set to None, using highest resolution.
    2024-12-06 13:18:55,101 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
    2024-12-06 13:18:55,378 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
    2024-12-06 13:18:56,491 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
    2024-12-06 13:18:57,002 - JUNIFER - INFO - antsApplyTransforms command to be executed:
    antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpbgpekftk/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a4f1c304-b3d4-11ef-9645-0242ac120002rwrpxf58/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpbgpekftk/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a4f1c304-b3d4-11ef-9645-0242ac120002rwrpxf58/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpbgpekftk/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a4f1c304-b3d4-11ef-9645-0242ac120002rwrpxf58/parcellation_warped.nii.gz
    2024-12-06 13:20:18,911 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

    2024-12-06 13:20:20,406 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp0ymgq_18/test.sqlite (multiple output)>
    2024-12-06 13:20:20,588 - JUNIFER - INFO - Marker collection fitting done
    2024-12-06 13:20:20,595 - JUNIFER - INFO - Getting element sub-03
    2024-12-06 13:20:20,595 - JUNIFER - INFO - Fitting pipeline
    2024-12-06 13:20:20,595 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0003_MR1/mwrc1OAS1_0003_MR1_mpr_anon_fslswapdim_bet.nii.gz
    2024-12-06 13:20:20,595 - JUNIFER - INFO - VBM_GM is of type NIFTI
    2024-12-06 13:20:20,596 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
    2024-12-06 13:20:20,596 - JUNIFER - INFO - Computing VBM_GM
    2024-12-06 13:20:20,596 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
    2024-12-06 13:20:20,596 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
    2024-12-06 13:20:20,596 - JUNIFER - INFO - Parcellation parameters:
    2024-12-06 13:20:20,596 - JUNIFER - INFO -      resolution: None
    2024-12-06 13:20:20,596 - JUNIFER - INFO -      n_rois: 1000
    2024-12-06 13:20:20,596 - JUNIFER - INFO -      yeo_networks: 7
    2024-12-06 13:20:20,596 - JUNIFER - INFO - Resolution set to None, using highest resolution.
    2024-12-06 13:20:20,599 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
    2024-12-06 13:20:20,877 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
    2024-12-06 13:20:22,021 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
    2024-12-06 13:20:22,531 - JUNIFER - INFO - antsApplyTransforms command to be executed:
    antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpl16j5mpw/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_d7e7d532-b3d4-11ef-9645-0242ac120002jt8pyfri/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpl16j5mpw/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_d7e7d532-b3d4-11ef-9645-0242ac120002jt8pyfri/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpl16j5mpw/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_d7e7d532-b3d4-11ef-9645-0242ac120002jt8pyfri/parcellation_warped.nii.gz
    2024-12-06 13:21:43,928 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

    2024-12-06 13:21:45,450 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp0ymgq_18/test.sqlite (multiple output)>
    2024-12-06 13:21:45,625 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
    2024-12-06 13:21:45,625 - JUNIFER - INFO - Computing VBM_GM
    2024-12-06 13:21:45,625 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
    2024-12-06 13:21:45,625 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
    2024-12-06 13:21:45,625 - JUNIFER - INFO - Parcellation parameters:
    2024-12-06 13:21:45,625 - JUNIFER - INFO -      resolution: None
    2024-12-06 13:21:45,625 - JUNIFER - INFO -      n_rois: 1000
    2024-12-06 13:21:45,625 - JUNIFER - INFO -      yeo_networks: 7
    2024-12-06 13:21:45,625 - JUNIFER - INFO - Resolution set to None, using highest resolution.
    2024-12-06 13:21:45,627 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
    2024-12-06 13:21:45,906 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
    2024-12-06 13:21:47,061 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
    2024-12-06 13:21:47,572 - JUNIFER - INFO - antsApplyTransforms command to be executed:
    antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpl16j5mpw/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_0a964234-b3d5-11ef-9645-0242ac120002avq6ga89/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpl16j5mpw/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_0a964234-b3d5-11ef-9645-0242ac120002avq6ga89/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpl16j5mpw/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_0a964234-b3d5-11ef-9645-0242ac120002avq6ga89/parcellation_warped.nii.gz
    2024-12-06 13:23:08,572 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

    2024-12-06 13:23:10,107 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp0ymgq_18/test.sqlite (multiple output)>
    2024-12-06 13:23:10,289 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
    2024-12-06 13:23:10,289 - JUNIFER - INFO - Computing VBM_GM
    2024-12-06 13:23:10,289 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
    2024-12-06 13:23:10,289 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
    2024-12-06 13:23:10,289 - JUNIFER - INFO - Parcellation parameters:
    2024-12-06 13:23:10,289 - JUNIFER - INFO -      resolution: None
    2024-12-06 13:23:10,289 - JUNIFER - INFO -      n_rois: 1000
    2024-12-06 13:23:10,289 - JUNIFER - INFO -      yeo_networks: 7
    2024-12-06 13:23:10,289 - JUNIFER - INFO - Resolution set to None, using highest resolution.
    2024-12-06 13:23:10,292 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
    2024-12-06 13:23:10,570 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
    2024-12-06 13:23:11,709 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
    2024-12-06 13:23:12,220 - JUNIFER - INFO - antsApplyTransforms command to be executed:
    antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpl16j5mpw/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_3d0cedf8-b3d5-11ef-9645-0242ac1200027104ws04/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpl16j5mpw/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_3d0cedf8-b3d5-11ef-9645-0242ac1200027104ws04/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpl16j5mpw/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_3d0cedf8-b3d5-11ef-9645-0242ac1200027104ws04/parcellation_warped.nii.gz
    2024-12-06 13:24:34,239 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

    2024-12-06 13:24:35,736 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp0ymgq_18/test.sqlite (multiple output)>
    2024-12-06 13:24:35,920 - JUNIFER - INFO - Marker collection fitting done
    2024-12-06 13:24:35,927 - JUNIFER - INFO - Getting element sub-04
    2024-12-06 13:24:35,927 - JUNIFER - INFO - Fitting pipeline
    2024-12-06 13:24:35,927 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0004_MR1/mwrc1OAS1_0004_MR1_mpr_anon_fslswapdim_bet.nii.gz
    2024-12-06 13:24:35,927 - JUNIFER - INFO - VBM_GM is of type NIFTI
    2024-12-06 13:24:35,928 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
    2024-12-06 13:24:35,928 - JUNIFER - INFO - Computing VBM_GM
    2024-12-06 13:24:35,928 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
    2024-12-06 13:24:35,928 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
    2024-12-06 13:24:35,928 - JUNIFER - INFO - Parcellation parameters:
    2024-12-06 13:24:35,928 - JUNIFER - INFO -      resolution: None
    2024-12-06 13:24:35,928 - JUNIFER - INFO -      n_rois: 1000
    2024-12-06 13:24:35,928 - JUNIFER - INFO -      yeo_networks: 7
    2024-12-06 13:24:35,928 - JUNIFER - INFO - Resolution set to None, using highest resolution.
    2024-12-06 13:24:35,931 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
    2024-12-06 13:24:36,209 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
    2024-12-06 13:24:37,351 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
    2024-12-06 13:24:37,861 - JUNIFER - INFO - antsApplyTransforms command to be executed:
    antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpgl08ywv7/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_701859c6-b3d5-11ef-9645-0242ac1200028663cbg7/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpgl08ywv7/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_701859c6-b3d5-11ef-9645-0242ac1200028663cbg7/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpgl08ywv7/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_701859c6-b3d5-11ef-9645-0242ac1200028663cbg7/parcellation_warped.nii.gz
    2024-12-06 13:25:59,263 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

    2024-12-06 13:26:00,823 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp0ymgq_18/test.sqlite (multiple output)>
    2024-12-06 13:26:00,999 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
    2024-12-06 13:26:00,999 - JUNIFER - INFO - Computing VBM_GM
    2024-12-06 13:26:01,000 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
    2024-12-06 13:26:01,000 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
    2024-12-06 13:26:01,000 - JUNIFER - INFO - Parcellation parameters:
    2024-12-06 13:26:01,000 - JUNIFER - INFO -      resolution: None
    2024-12-06 13:26:01,000 - JUNIFER - INFO -      n_rois: 1000
    2024-12-06 13:26:01,000 - JUNIFER - INFO -      yeo_networks: 7
    2024-12-06 13:26:01,000 - JUNIFER - INFO - Resolution set to None, using highest resolution.
    2024-12-06 13:26:01,002 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
    2024-12-06 13:26:01,282 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
    2024-12-06 13:26:02,435 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
    2024-12-06 13:26:02,947 - JUNIFER - INFO - antsApplyTransforms command to be executed:
    antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpgl08ywv7/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a2cd7d7e-b3d5-11ef-9645-0242ac1200023jq1epg0/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpgl08ywv7/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a2cd7d7e-b3d5-11ef-9645-0242ac1200023jq1epg0/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpgl08ywv7/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a2cd7d7e-b3d5-11ef-9645-0242ac1200023jq1epg0/parcellation_warped.nii.gz
    2024-12-06 13:27:25,227 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

    2024-12-06 13:27:26,730 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp0ymgq_18/test.sqlite (multiple output)>
    2024-12-06 13:27:26,908 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
    2024-12-06 13:27:26,908 - JUNIFER - INFO - Computing VBM_GM
    2024-12-06 13:27:26,908 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
    2024-12-06 13:27:26,908 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
    2024-12-06 13:27:26,908 - JUNIFER - INFO - Parcellation parameters:
    2024-12-06 13:27:26,908 - JUNIFER - INFO -      resolution: None
    2024-12-06 13:27:26,908 - JUNIFER - INFO -      n_rois: 1000
    2024-12-06 13:27:26,908 - JUNIFER - INFO -      yeo_networks: 7
    2024-12-06 13:27:26,908 - JUNIFER - INFO - Resolution set to None, using highest resolution.
    2024-12-06 13:27:26,910 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
    2024-12-06 13:27:27,188 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
    2024-12-06 13:27:28,277 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
    2024-12-06 13:27:28,787 - JUNIFER - INFO - antsApplyTransforms command to be executed:
    antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpgl08ywv7/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_d601ca92-b3d5-11ef-9645-0242ac120002snb02ntf/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpgl08ywv7/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_d601ca92-b3d5-11ef-9645-0242ac120002snb02ntf/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpgl08ywv7/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_d601ca92-b3d5-11ef-9645-0242ac120002snb02ntf/parcellation_warped.nii.gz
    2024-12-06 13:28:50,740 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

    2024-12-06 13:28:52,322 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp0ymgq_18/test.sqlite (multiple output)>
    2024-12-06 13:28:52,509 - JUNIFER - INFO - Marker collection fitting done
    2024-12-06 13:28:52,516 - JUNIFER - INFO - Getting element sub-05
    2024-12-06 13:28:52,516 - JUNIFER - INFO - Fitting pipeline
    2024-12-06 13:28:52,516 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0005_MR1/mwrc1OAS1_0005_MR1_mpr_anon_fslswapdim_bet.nii.gz
    2024-12-06 13:28:52,516 - JUNIFER - INFO - VBM_GM is of type NIFTI
    2024-12-06 13:28:52,517 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
    2024-12-06 13:28:52,517 - JUNIFER - INFO - Computing VBM_GM
    2024-12-06 13:28:52,517 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
    2024-12-06 13:28:52,517 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
    2024-12-06 13:28:52,517 - JUNIFER - INFO - Parcellation parameters:
    2024-12-06 13:28:52,517 - JUNIFER - INFO -      resolution: None
    2024-12-06 13:28:52,518 - JUNIFER - INFO -      n_rois: 1000
    2024-12-06 13:28:52,518 - JUNIFER - INFO -      yeo_networks: 7
    2024-12-06 13:28:52,518 - JUNIFER - INFO - Resolution set to None, using highest resolution.
    2024-12-06 13:28:52,520 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
    2024-12-06 13:28:52,800 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
    2024-12-06 13:28:53,930 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
    2024-12-06 13:28:54,441 - JUNIFER - INFO - antsApplyTransforms command to be executed:
    antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmppbtbvzv2/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_09090c2a-b3d6-11ef-9645-0242ac1200027ax2d73h/prewarp_parcellation.nii.gz -r /tmp/junifer/tmppbtbvzv2/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_09090c2a-b3d6-11ef-9645-0242ac1200027ax2d73h/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmppbtbvzv2/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_09090c2a-b3d6-11ef-9645-0242ac1200027ax2d73h/parcellation_warped.nii.gz
    2024-12-06 13:30:16,672 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

    2024-12-06 13:30:18,287 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp0ymgq_18/test.sqlite (multiple output)>
    2024-12-06 13:30:18,467 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
    2024-12-06 13:30:18,467 - JUNIFER - INFO - Computing VBM_GM
    2024-12-06 13:30:18,467 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
    2024-12-06 13:30:18,468 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
    2024-12-06 13:30:18,468 - JUNIFER - INFO - Parcellation parameters:
    2024-12-06 13:30:18,468 - JUNIFER - INFO -      resolution: None
    2024-12-06 13:30:18,468 - JUNIFER - INFO -      n_rois: 1000
    2024-12-06 13:30:18,468 - JUNIFER - INFO -      yeo_networks: 7
    2024-12-06 13:30:18,468 - JUNIFER - INFO - Resolution set to None, using highest resolution.
    2024-12-06 13:30:18,470 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
    2024-12-06 13:30:18,750 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
    2024-12-06 13:30:19,886 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
    2024-12-06 13:30:20,401 - JUNIFER - INFO - antsApplyTransforms command to be executed:
    antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmppbtbvzv2/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_3c43eeac-b3d6-11ef-9645-0242ac1200025kedekj1/prewarp_parcellation.nii.gz -r /tmp/junifer/tmppbtbvzv2/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_3c43eeac-b3d6-11ef-9645-0242ac1200025kedekj1/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmppbtbvzv2/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_3c43eeac-b3d6-11ef-9645-0242ac1200025kedekj1/parcellation_warped.nii.gz
    2024-12-06 13:31:42,009 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

    2024-12-06 13:31:43,630 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp0ymgq_18/test.sqlite (multiple output)>
    2024-12-06 13:31:43,813 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
    2024-12-06 13:31:43,813 - JUNIFER - INFO - Computing VBM_GM
    2024-12-06 13:31:43,813 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
    2024-12-06 13:31:43,814 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
    2024-12-06 13:31:43,814 - JUNIFER - INFO - Parcellation parameters:
    2024-12-06 13:31:43,814 - JUNIFER - INFO -      resolution: None
    2024-12-06 13:31:43,814 - JUNIFER - INFO -      n_rois: 1000
    2024-12-06 13:31:43,814 - JUNIFER - INFO -      yeo_networks: 7
    2024-12-06 13:31:43,814 - JUNIFER - INFO - Resolution set to None, using highest resolution.
    2024-12-06 13:31:43,816 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
    2024-12-06 13:31:44,094 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
    2024-12-06 13:31:45,203 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
    2024-12-06 13:31:45,713 - JUNIFER - INFO - antsApplyTransforms command to be executed:
    antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmppbtbvzv2/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_6f22909e-b3d6-11ef-9645-0242ac120002id5ufssb/prewarp_parcellation.nii.gz -r /tmp/junifer/tmppbtbvzv2/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_6f22909e-b3d6-11ef-9645-0242ac120002id5ufssb/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmppbtbvzv2/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_6f22909e-b3d6-11ef-9645-0242ac120002id5ufssb/parcellation_warped.nii.gz
    2024-12-06 13:33:06,032 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

    2024-12-06 13:33:07,588 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp0ymgq_18/test.sqlite (multiple output)>
    2024-12-06 13:33:07,774 - JUNIFER - INFO - Marker collection fitting done
    2024-12-06 13:33:07,781 - JUNIFER - INFO - Getting element sub-06
    2024-12-06 13:33:07,781 - JUNIFER - INFO - Fitting pipeline
    2024-12-06 13:33:07,781 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0006_MR1/mwrc1OAS1_0006_MR1_mpr_anon_fslswapdim_bet.nii.gz
    2024-12-06 13:33:07,781 - JUNIFER - INFO - VBM_GM is of type NIFTI
    2024-12-06 13:33:07,782 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
    2024-12-06 13:33:07,783 - JUNIFER - INFO - Computing VBM_GM
    2024-12-06 13:33:07,783 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
    2024-12-06 13:33:07,783 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
    2024-12-06 13:33:07,783 - JUNIFER - INFO - Parcellation parameters:
    2024-12-06 13:33:07,783 - JUNIFER - INFO -      resolution: None
    2024-12-06 13:33:07,783 - JUNIFER - INFO -      n_rois: 1000
    2024-12-06 13:33:07,783 - JUNIFER - INFO -      yeo_networks: 7
    2024-12-06 13:33:07,783 - JUNIFER - INFO - Resolution set to None, using highest resolution.
    2024-12-06 13:33:07,785 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
    2024-12-06 13:33:08,066 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
    2024-12-06 13:33:09,184 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
    2024-12-06 13:33:09,695 - JUNIFER - INFO - antsApplyTransforms command to be executed:
    antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpoym28osr/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a12f8006-b3d6-11ef-9645-0242ac120002nag1_zry/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpoym28osr/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a12f8006-b3d6-11ef-9645-0242ac120002nag1_zry/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpoym28osr/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a12f8006-b3d6-11ef-9645-0242ac120002nag1_zry/parcellation_warped.nii.gz
    2024-12-06 13:34:30,759 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

    2024-12-06 13:34:32,193 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp0ymgq_18/test.sqlite (multiple output)>
    2024-12-06 13:34:32,365 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
    2024-12-06 13:34:32,365 - JUNIFER - INFO - Computing VBM_GM
    2024-12-06 13:34:32,365 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
    2024-12-06 13:34:32,366 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
    2024-12-06 13:34:32,366 - JUNIFER - INFO - Parcellation parameters:
    2024-12-06 13:34:32,366 - JUNIFER - INFO -      resolution: None
    2024-12-06 13:34:32,366 - JUNIFER - INFO -      n_rois: 1000
    2024-12-06 13:34:32,366 - JUNIFER - INFO -      yeo_networks: 7
    2024-12-06 13:34:32,366 - JUNIFER - INFO - Resolution set to None, using highest resolution.
    2024-12-06 13:34:32,368 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
    2024-12-06 13:34:32,645 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
    2024-12-06 13:34:33,723 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
    2024-12-06 13:34:34,232 - JUNIFER - INFO - antsApplyTransforms command to be executed:
    antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpoym28osr/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_d3994fb8-b3d6-11ef-9645-0242ac1200025t7cfdmm/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpoym28osr/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_d3994fb8-b3d6-11ef-9645-0242ac1200025t7cfdmm/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpoym28osr/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_d3994fb8-b3d6-11ef-9645-0242ac1200025t7cfdmm/parcellation_warped.nii.gz
    2024-12-06 13:35:56,102 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

    2024-12-06 13:35:57,532 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp0ymgq_18/test.sqlite (multiple output)>
    2024-12-06 13:35:57,710 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
    2024-12-06 13:35:57,710 - JUNIFER - INFO - Computing VBM_GM
    2024-12-06 13:35:57,710 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
    2024-12-06 13:35:57,710 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
    2024-12-06 13:35:57,710 - JUNIFER - INFO - Parcellation parameters:
    2024-12-06 13:35:57,710 - JUNIFER - INFO -      resolution: None
    2024-12-06 13:35:57,710 - JUNIFER - INFO -      n_rois: 1000
    2024-12-06 13:35:57,710 - JUNIFER - INFO -      yeo_networks: 7
    2024-12-06 13:35:57,710 - JUNIFER - INFO - Resolution set to None, using highest resolution.
    2024-12-06 13:35:57,712 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
    2024-12-06 13:35:57,989 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
    2024-12-06 13:35:59,058 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
    2024-12-06 13:35:59,568 - JUNIFER - INFO - antsApplyTransforms command to be executed:
    antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpoym28osr/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_0677c3f6-b3d7-11ef-9645-0242ac120002kbyhsf8s/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpoym28osr/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_0677c3f6-b3d7-11ef-9645-0242ac120002kbyhsf8s/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpoym28osr/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_0677c3f6-b3d7-11ef-9645-0242ac120002kbyhsf8s/parcellation_warped.nii.gz
    2024-12-06 13:37:21,805 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

    2024-12-06 13:37:23,284 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp0ymgq_18/test.sqlite (multiple output)>
    2024-12-06 13:37:23,467 - JUNIFER - INFO - Marker collection fitting done
    2024-12-06 13:37:23,474 - JUNIFER - INFO - Getting element sub-07
    2024-12-06 13:37:23,474 - JUNIFER - INFO - Fitting pipeline
    2024-12-06 13:37:23,474 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0007_MR1/mwrc1OAS1_0007_MR1_mpr_anon_fslswapdim_bet.nii.gz
    2024-12-06 13:37:23,474 - JUNIFER - INFO - VBM_GM is of type NIFTI
    2024-12-06 13:37:23,475 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
    2024-12-06 13:37:23,475 - JUNIFER - INFO - Computing VBM_GM
    2024-12-06 13:37:23,475 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
    2024-12-06 13:37:23,475 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
    2024-12-06 13:37:23,475 - JUNIFER - INFO - Parcellation parameters:
    2024-12-06 13:37:23,475 - JUNIFER - INFO -      resolution: None
    2024-12-06 13:37:23,475 - JUNIFER - INFO -      n_rois: 1000
    2024-12-06 13:37:23,475 - JUNIFER - INFO -      yeo_networks: 7
    2024-12-06 13:37:23,475 - JUNIFER - INFO - Resolution set to None, using highest resolution.
    2024-12-06 13:37:23,477 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
    2024-12-06 13:37:23,757 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
    2024-12-06 13:37:24,840 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
    2024-12-06 13:37:25,349 - JUNIFER - INFO - antsApplyTransforms command to be executed:
    antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpo2aa6xrk/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_3996e41a-b3d7-11ef-9645-0242ac120002e0genpwg/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpo2aa6xrk/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_3996e41a-b3d7-11ef-9645-0242ac120002e0genpwg/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpo2aa6xrk/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_3996e41a-b3d7-11ef-9645-0242ac120002e0genpwg/parcellation_warped.nii.gz
    2024-12-06 13:38:47,950 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

    2024-12-06 13:38:49,399 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp0ymgq_18/test.sqlite (multiple output)>
    2024-12-06 13:38:49,587 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
    2024-12-06 13:38:49,587 - JUNIFER - INFO - Computing VBM_GM
    2024-12-06 13:38:49,588 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
    2024-12-06 13:38:49,588 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
    2024-12-06 13:38:49,588 - JUNIFER - INFO - Parcellation parameters:
    2024-12-06 13:38:49,588 - JUNIFER - INFO -      resolution: None
    2024-12-06 13:38:49,588 - JUNIFER - INFO -      n_rois: 1000
    2024-12-06 13:38:49,588 - JUNIFER - INFO -      yeo_networks: 7
    2024-12-06 13:38:49,588 - JUNIFER - INFO - Resolution set to None, using highest resolution.
    2024-12-06 13:38:49,590 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
    2024-12-06 13:38:49,869 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
    2024-12-06 13:38:50,943 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
    2024-12-06 13:38:51,458 - JUNIFER - INFO - antsApplyTransforms command to be executed:
    antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpo2aa6xrk/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_6cea9f46-b3d7-11ef-9645-0242ac120002x8uhkdtn/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpo2aa6xrk/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_6cea9f46-b3d7-11ef-9645-0242ac120002x8uhkdtn/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpo2aa6xrk/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_6cea9f46-b3d7-11ef-9645-0242ac120002x8uhkdtn/parcellation_warped.nii.gz
    2024-12-06 13:40:15,366 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

    2024-12-06 13:40:16,893 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp0ymgq_18/test.sqlite (multiple output)>
    2024-12-06 13:40:17,073 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
    2024-12-06 13:40:17,073 - JUNIFER - INFO - Computing VBM_GM
    2024-12-06 13:40:17,073 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
    2024-12-06 13:40:17,073 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
    2024-12-06 13:40:17,073 - JUNIFER - INFO - Parcellation parameters:
    2024-12-06 13:40:17,073 - JUNIFER - INFO -      resolution: None
    2024-12-06 13:40:17,073 - JUNIFER - INFO -      n_rois: 1000
    2024-12-06 13:40:17,073 - JUNIFER - INFO -      yeo_networks: 7
    2024-12-06 13:40:17,074 - JUNIFER - INFO - Resolution set to None, using highest resolution.
    2024-12-06 13:40:17,076 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
    2024-12-06 13:40:17,356 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
    2024-12-06 13:40:18,442 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
    2024-12-06 13:40:18,953 - JUNIFER - INFO - antsApplyTransforms command to be executed:
    antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpo2aa6xrk/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a1100374-b3d7-11ef-9645-0242ac1200020mwtukbd/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpo2aa6xrk/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a1100374-b3d7-11ef-9645-0242ac1200020mwtukbd/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpo2aa6xrk/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a1100374-b3d7-11ef-9645-0242ac1200020mwtukbd/parcellation_warped.nii.gz
    2024-12-06 13:41:41,351 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

    2024-12-06 13:41:42,905 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp0ymgq_18/test.sqlite (multiple output)>
    2024-12-06 13:41:43,090 - JUNIFER - INFO - Marker collection fitting done
    2024-12-06 13:41:43,097 - JUNIFER - INFO - Getting element sub-08
    2024-12-06 13:41:43,097 - JUNIFER - INFO - Fitting pipeline
    2024-12-06 13:41:43,097 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0009_MR1/mwrc1OAS1_0009_MR1_mpr_anon_fslswapdim_bet.nii.gz
    2024-12-06 13:41:43,097 - JUNIFER - INFO - VBM_GM is of type NIFTI
    2024-12-06 13:41:43,098 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
    2024-12-06 13:41:43,099 - JUNIFER - INFO - Computing VBM_GM
    2024-12-06 13:41:43,099 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
    2024-12-06 13:41:43,099 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
    2024-12-06 13:41:43,099 - JUNIFER - INFO - Parcellation parameters:
    2024-12-06 13:41:43,099 - JUNIFER - INFO -      resolution: None
    2024-12-06 13:41:43,099 - JUNIFER - INFO -      n_rois: 1000
    2024-12-06 13:41:43,099 - JUNIFER - INFO -      yeo_networks: 7
    2024-12-06 13:41:43,099 - JUNIFER - INFO - Resolution set to None, using highest resolution.
    2024-12-06 13:41:43,101 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
    2024-12-06 13:41:43,380 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
    2024-12-06 13:41:44,493 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
    2024-12-06 13:41:45,003 - JUNIFER - INFO - antsApplyTransforms command to be executed:
    antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpifspnpz3/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_d45639ce-b3d7-11ef-9645-0242ac120002foscfug_/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpifspnpz3/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_d45639ce-b3d7-11ef-9645-0242ac120002foscfug_/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpifspnpz3/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_d45639ce-b3d7-11ef-9645-0242ac120002foscfug_/parcellation_warped.nii.gz
    2024-12-06 13:43:06,726 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

    2024-12-06 13:43:08,297 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp0ymgq_18/test.sqlite (multiple output)>
    2024-12-06 13:43:08,473 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
    2024-12-06 13:43:08,473 - JUNIFER - INFO - Computing VBM_GM
    2024-12-06 13:43:08,473 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
    2024-12-06 13:43:08,473 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
    2024-12-06 13:43:08,473 - JUNIFER - INFO - Parcellation parameters:
    2024-12-06 13:43:08,473 - JUNIFER - INFO -      resolution: None
    2024-12-06 13:43:08,473 - JUNIFER - INFO -      n_rois: 1000
    2024-12-06 13:43:08,473 - JUNIFER - INFO -      yeo_networks: 7
    2024-12-06 13:43:08,473 - JUNIFER - INFO - Resolution set to None, using highest resolution.
    2024-12-06 13:43:08,476 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
    2024-12-06 13:43:08,754 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
    2024-12-06 13:43:09,851 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
    2024-12-06 13:43:10,362 - JUNIFER - INFO - antsApplyTransforms command to be executed:
    antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpifspnpz3/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_07394e76-b3d8-11ef-9645-0242ac120002v3gpw1il/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpifspnpz3/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_07394e76-b3d8-11ef-9645-0242ac120002v3gpw1il/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpifspnpz3/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_07394e76-b3d8-11ef-9645-0242ac120002v3gpw1il/parcellation_warped.nii.gz
    2024-12-06 13:44:32,309 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

    2024-12-06 13:44:33,820 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp0ymgq_18/test.sqlite (multiple output)>
    2024-12-06 13:44:34,001 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
    2024-12-06 13:44:34,001 - JUNIFER - INFO - Computing VBM_GM
    2024-12-06 13:44:34,001 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
    2024-12-06 13:44:34,001 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
    2024-12-06 13:44:34,001 - JUNIFER - INFO - Parcellation parameters:
    2024-12-06 13:44:34,001 - JUNIFER - INFO -      resolution: None
    2024-12-06 13:44:34,001 - JUNIFER - INFO -      n_rois: 1000
    2024-12-06 13:44:34,001 - JUNIFER - INFO -      yeo_networks: 7
    2024-12-06 13:44:34,001 - JUNIFER - INFO - Resolution set to None, using highest resolution.
    2024-12-06 13:44:34,004 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
    2024-12-06 13:44:34,283 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
    2024-12-06 13:44:35,385 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
    2024-12-06 13:44:35,894 - JUNIFER - INFO - antsApplyTransforms command to be executed:
    antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpifspnpz3/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_3a341950-b3d8-11ef-9645-0242ac120002_guw4t5n/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpifspnpz3/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_3a341950-b3d8-11ef-9645-0242ac120002_guw4t5n/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpifspnpz3/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_3a341950-b3d8-11ef-9645-0242ac120002_guw4t5n/parcellation_warped.nii.gz
    2024-12-06 13:45:57,927 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

    2024-12-06 13:45:59,439 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp0ymgq_18/test.sqlite (multiple output)>
    2024-12-06 13:45:59,629 - JUNIFER - INFO - Marker collection fitting done
    2024-12-06 13:45:59,636 - JUNIFER - INFO - Getting element sub-09
    2024-12-06 13:45:59,636 - JUNIFER - INFO - Fitting pipeline
    2024-12-06 13:45:59,637 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0010_MR1/mwrc1OAS1_0010_MR1_mpr_anon_fslswapdim_bet.nii.gz
    2024-12-06 13:45:59,637 - JUNIFER - INFO - VBM_GM is of type NIFTI
    2024-12-06 13:45:59,638 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
    2024-12-06 13:45:59,638 - JUNIFER - INFO - Computing VBM_GM
    2024-12-06 13:45:59,638 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
    2024-12-06 13:45:59,638 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
    2024-12-06 13:45:59,638 - JUNIFER - INFO - Parcellation parameters:
    2024-12-06 13:45:59,638 - JUNIFER - INFO -      resolution: None
    2024-12-06 13:45:59,638 - JUNIFER - INFO -      n_rois: 1000
    2024-12-06 13:45:59,638 - JUNIFER - INFO -      yeo_networks: 7
    2024-12-06 13:45:59,638 - JUNIFER - INFO - Resolution set to None, using highest resolution.
    2024-12-06 13:45:59,640 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
    2024-12-06 13:45:59,919 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
    2024-12-06 13:46:01,031 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
    2024-12-06 13:46:01,545 - JUNIFER - INFO - antsApplyTransforms command to be executed:
    antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpc072d_d6/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_6d3efd1a-b3d8-11ef-9645-0242ac120002l0ylh4iv/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpc072d_d6/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_6d3efd1a-b3d8-11ef-9645-0242ac120002l0ylh4iv/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpc072d_d6/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_6d3efd1a-b3d8-11ef-9645-0242ac120002l0ylh4iv/parcellation_warped.nii.gz
    2024-12-06 13:47:23,514 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

    2024-12-06 13:47:25,051 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp0ymgq_18/test.sqlite (multiple output)>
    2024-12-06 13:47:25,223 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
    2024-12-06 13:47:25,223 - JUNIFER - INFO - Computing VBM_GM
    2024-12-06 13:47:25,223 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
    2024-12-06 13:47:25,223 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
    2024-12-06 13:47:25,223 - JUNIFER - INFO - Parcellation parameters:
    2024-12-06 13:47:25,223 - JUNIFER - INFO -      resolution: None
    2024-12-06 13:47:25,223 - JUNIFER - INFO -      n_rois: 1000
    2024-12-06 13:47:25,223 - JUNIFER - INFO -      yeo_networks: 7
    2024-12-06 13:47:25,223 - JUNIFER - INFO - Resolution set to None, using highest resolution.
    2024-12-06 13:47:25,225 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
    2024-12-06 13:47:25,500 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
    2024-12-06 13:47:26,581 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
    2024-12-06 13:47:27,091 - JUNIFER - INFO - antsApplyTransforms command to be executed:
    antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpc072d_d6/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a041afc8-b3d8-11ef-9645-0242ac120002clldluh2/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpc072d_d6/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a041afc8-b3d8-11ef-9645-0242ac120002clldluh2/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpc072d_d6/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a041afc8-b3d8-11ef-9645-0242ac120002clldluh2/parcellation_warped.nii.gz
    2024-12-06 13:48:48,830 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

    2024-12-06 13:48:50,262 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp0ymgq_18/test.sqlite (multiple output)>
    2024-12-06 13:48:50,439 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
    2024-12-06 13:48:50,439 - JUNIFER - INFO - Computing VBM_GM
    2024-12-06 13:48:50,439 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
    2024-12-06 13:48:50,439 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
    2024-12-06 13:48:50,439 - JUNIFER - INFO - Parcellation parameters:
    2024-12-06 13:48:50,439 - JUNIFER - INFO -      resolution: None
    2024-12-06 13:48:50,439 - JUNIFER - INFO -      n_rois: 1000
    2024-12-06 13:48:50,439 - JUNIFER - INFO -      yeo_networks: 7
    2024-12-06 13:48:50,439 - JUNIFER - INFO - Resolution set to None, using highest resolution.
    2024-12-06 13:48:50,442 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
    2024-12-06 13:48:50,717 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
    2024-12-06 13:48:51,787 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
    2024-12-06 13:48:52,296 - JUNIFER - INFO - antsApplyTransforms command to be executed:
    antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpc072d_d6/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_d30cc294-b3d8-11ef-9645-0242ac1200021foxm3i7/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpc072d_d6/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_d30cc294-b3d8-11ef-9645-0242ac1200021foxm3i7/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpc072d_d6/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_d30cc294-b3d8-11ef-9645-0242ac1200021foxm3i7/parcellation_warped.nii.gz
    2024-12-06 13:50:14,489 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

    2024-12-06 13:50:15,936 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp0ymgq_18/test.sqlite (multiple output)>
    2024-12-06 13:50:16,116 - JUNIFER - INFO - Marker collection fitting done
    2024-12-06 13:50:16,123 - JUNIFER - INFO - Getting element sub-10
    2024-12-06 13:50:16,123 - JUNIFER - INFO - Fitting pipeline
    2024-12-06 13:50:16,123 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0011_MR1/mwrc1OAS1_0011_MR1_mpr_anon_fslswapdim_bet.nii.gz
    2024-12-06 13:50:16,123 - JUNIFER - INFO - VBM_GM is of type NIFTI
    2024-12-06 13:50:16,124 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
    2024-12-06 13:50:16,124 - JUNIFER - INFO - Computing VBM_GM
    2024-12-06 13:50:16,124 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
    2024-12-06 13:50:16,124 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
    2024-12-06 13:50:16,124 - JUNIFER - INFO - Parcellation parameters:
    2024-12-06 13:50:16,124 - JUNIFER - INFO -      resolution: None
    2024-12-06 13:50:16,124 - JUNIFER - INFO -      n_rois: 1000
    2024-12-06 13:50:16,124 - JUNIFER - INFO -      yeo_networks: 7
    2024-12-06 13:50:16,125 - JUNIFER - INFO - Resolution set to None, using highest resolution.
    2024-12-06 13:50:16,127 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
    2024-12-06 13:50:16,403 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
    2024-12-06 13:50:17,478 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
    2024-12-06 13:50:17,989 - JUNIFER - INFO - antsApplyTransforms command to be executed:
    antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpqxbkwr6t/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_061f66b4-b3d9-11ef-9645-0242ac120002dhx5iwsx/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpqxbkwr6t/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_061f66b4-b3d9-11ef-9645-0242ac120002dhx5iwsx/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpqxbkwr6t/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_061f66b4-b3d9-11ef-9645-0242ac120002dhx5iwsx/parcellation_warped.nii.gz
    2024-12-06 13:51:39,924 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

    2024-12-06 13:51:41,401 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp0ymgq_18/test.sqlite (multiple output)>
    2024-12-06 13:51:41,573 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
    2024-12-06 13:51:41,573 - JUNIFER - INFO - Computing VBM_GM
    2024-12-06 13:51:41,573 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
    2024-12-06 13:51:41,573 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
    2024-12-06 13:51:41,573 - JUNIFER - INFO - Parcellation parameters:
    2024-12-06 13:51:41,573 - JUNIFER - INFO -      resolution: None
    2024-12-06 13:51:41,573 - JUNIFER - INFO -      n_rois: 1000
    2024-12-06 13:51:41,573 - JUNIFER - INFO -      yeo_networks: 7
    2024-12-06 13:51:41,573 - JUNIFER - INFO - Resolution set to None, using highest resolution.
    2024-12-06 13:51:41,575 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
    2024-12-06 13:51:41,853 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
    2024-12-06 13:51:42,937 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
    2024-12-06 13:51:43,446 - JUNIFER - INFO - antsApplyTransforms command to be executed:
    antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpqxbkwr6t/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_390e135e-b3d9-11ef-9645-0242ac120002d2p7us7z/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpqxbkwr6t/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_390e135e-b3d9-11ef-9645-0242ac120002d2p7us7z/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpqxbkwr6t/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_390e135e-b3d9-11ef-9645-0242ac120002d2p7us7z/parcellation_warped.nii.gz
    2024-12-06 13:53:05,131 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

    2024-12-06 13:53:06,691 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp0ymgq_18/test.sqlite (multiple output)>
    2024-12-06 13:53:06,874 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
    2024-12-06 13:53:06,874 - JUNIFER - INFO - Computing VBM_GM
    2024-12-06 13:53:06,874 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
    2024-12-06 13:53:06,875 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
    2024-12-06 13:53:06,875 - JUNIFER - INFO - Parcellation parameters:
    2024-12-06 13:53:06,875 - JUNIFER - INFO -      resolution: None
    2024-12-06 13:53:06,875 - JUNIFER - INFO -      n_rois: 1000
    2024-12-06 13:53:06,875 - JUNIFER - INFO -      yeo_networks: 7
    2024-12-06 13:53:06,875 - JUNIFER - INFO - Resolution set to None, using highest resolution.
    2024-12-06 13:53:06,877 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
    2024-12-06 13:53:07,157 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
    2024-12-06 13:53:08,269 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
    2024-12-06 13:53:08,779 - JUNIFER - INFO - antsApplyTransforms command to be executed:
    antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpqxbkwr6t/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_6be65e08-b3d9-11ef-9645-0242ac120002yzpzv093/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpqxbkwr6t/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_6be65e08-b3d9-11ef-9645-0242ac120002yzpzv093/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpqxbkwr6t/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_6be65e08-b3d9-11ef-9645-0242ac120002yzpzv093/parcellation_warped.nii.gz
    2024-12-06 13:54:31,336 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

    2024-12-06 13:54:32,870 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp0ymgq_18/test.sqlite (multiple output)>
    2024-12-06 13:54:33,058 - JUNIFER - INFO - Marker collection fitting done






|

.. code-block:: Python

    import tempfile

    import junifer.testing.registry  # noqa: F401
    from junifer.api import run


    datagrabber = {
        "kind": "OasisVBMTestingDataGrabber",
    }

    markers = [
        {
            "name": "Schaefer1000x7_TrimMean80",
            "kind": "ParcelAggregation",
            "parcellation": "Schaefer1000x7",
            "method": "trim_mean",
            "method_params": {"proportiontocut": 0.2},
        },
        {
            "name": "Schaefer1000x7_Mean",
            "kind": "ParcelAggregation",
            "parcellation": "Schaefer1000x7",
            "method": "mean",
        },
        {
            "name": "Schaefer1000x7_Std",
            "kind": "ParcelAggregation",
            "parcellation": "Schaefer1000x7",
            "method": "std",
        },
    ]

    storage = {
        "kind": "SQLiteFeatureStorage",
    }

    with tempfile.TemporaryDirectory() as tmpdir:
        uri = f"{tmpdir}/test.sqlite"
        storage["uri"] = uri
        run(
            workdir="/tmp",
            datagrabber=datagrabber,
            markers=markers,
            storage=storage,
        )


.. rst-class:: sphx-glr-timing

   **Total running time of the script:** (43 minutes 21.995 seconds)


.. _sphx_glr_download_auto_examples_run_run_gmd_mean.py:

.. only:: html

  .. container:: sphx-glr-footer sphx-glr-footer-example

    .. container:: sphx-glr-download sphx-glr-download-jupyter

      :download:`Download Jupyter notebook: run_run_gmd_mean.ipynb <run_run_gmd_mean.ipynb>`

    .. container:: sphx-glr-download sphx-glr-download-python

      :download:`Download Python source code: run_run_gmd_mean.py <run_run_gmd_mean.py>`

    .. container:: sphx-glr-download sphx-glr-download-zip

      :download:`Download zipped: run_run_gmd_mean.zip <run_run_gmd_mean.zip>`


.. only:: html

 .. rst-class:: sphx-glr-signature

    `Gallery generated by Sphinx-Gallery <https://sphinx-gallery.github.io>`_