8.3. UKB VBM GMD Extraction

Authors: Federico Raimondo

License: BSD 3 clause

2025-01-27 10:40:59,001 - JUNIFER - INFO - Registering OasisVBMTestingDataGrabber in datagrabber
2025-01-27 10:40:59,001 - JUNIFER - INFO - Registering SPMAuditoryTestingDataGrabber in datagrabber
2025-01-27 10:40:59,001 - JUNIFER - INFO - Registering PartlyCloudyTestingDataGrabber in datagrabber
2025-01-27 10:41:05,237 - JUNIFER - INFO - Registering ParcelAggregation in marker
2025-01-27 10:41:05,245 - JUNIFER - INFO - Registering SQLiteFeatureStorage in storage
2025-01-27 10:41:05,245 - JUNIFER - INFO - Validating Marker Collection
2025-01-27 10:41:05,245 - JUNIFER - INFO - DataGrabber output type: ['VBM_GM']
2025-01-27 10:41:05,245 - JUNIFER - INFO - Validating Data Reader:
2025-01-27 10:41:05,245 - JUNIFER - INFO - Data Reader output type: ['VBM_GM']
2025-01-27 10:41:05,245 - JUNIFER - INFO - Validating Marker: Schaefer1000x7_TrimMean80
2025-01-27 10:41:05,245 - JUNIFER - INFO - Marker output type: ['vector']
2025-01-27 10:41:05,245 - JUNIFER - INFO - Validating storage for Schaefer1000x7_TrimMean80
2025-01-27 10:41:05,245 - JUNIFER - INFO - Validating Marker: Schaefer1000x7_Mean
2025-01-27 10:41:05,245 - JUNIFER - INFO - Marker output type: ['vector']
2025-01-27 10:41:05,245 - JUNIFER - INFO - Validating storage for Schaefer1000x7_Mean
2025-01-27 10:41:05,245 - JUNIFER - INFO - Validating Marker: Schaefer1000x7_Std
2025-01-27 10:41:05,245 - JUNIFER - INFO - Marker output type: ['vector']
2025-01-27 10:41:05,245 - JUNIFER - INFO - Validating storage for Schaefer1000x7_Std

Added README.md to /github/home/nilearn_data


Dataset created in /github/home/nilearn_data/oasis1

Downloading data from https://www.nitrc.org/frs/download.php/6364/archive_dartel.tgz ...

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Extracting data from /github/home/nilearn_data/oasis1/7088b0bf88f5650db26e32ec3afdd589/archive_dartel.tgz..... done.
2025-01-27 10:41:19,400 - JUNIFER - INFO - Getting element sub-01
2025-01-27 10:41:19,400 - JUNIFER - INFO - Fitting pipeline
2025-01-27 10:41:19,400 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0001_MR1/mwrc1OAS1_0001_MR1_mpr_anon_fslswapdim_bet.nii.gz
2025-01-27 10:41:19,400 - JUNIFER - INFO - VBM_GM is of type NIFTI
2025-01-27 10:41:19,401 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2025-01-27 10:41:19,401 - JUNIFER - INFO - Computing VBM_GM
2025-01-27 10:41:19,401 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-01-27 10:41:19,402 - JUNIFER - INFO - Parcellation parameters:
2025-01-27 10:41:19,402 - JUNIFER - INFO -      resolution: None
2025-01-27 10:41:19,402 - JUNIFER - INFO -      n_rois: 1000
2025-01-27 10:41:19,402 - JUNIFER - INFO -      yeo_networks: 7
2025-01-27 10:41:19,402 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-01-27 10:41:25,721 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v1.0.0/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-01-27 10:48:09,542 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
Downloading https://templateflow.s3.amazonaws.com/tpl-MNI152Lin/tpl-MNI152Lin_res-01_T1w.nii.gz

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 64%|██████▍   | 6.85M/10.7M [00:00<00:00, 68.5MB/s]
100%|██████████| 10.7M/10.7M [00:00<00:00, 77.1MB/s]
2025-01-27 10:48:10,281 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpslb_u23i/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_42282520-dc9b-11ef-bd11-0242ac120002c0x3mkaa/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpslb_u23i/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_42282520-dc9b-11ef-bd11-0242ac120002c0x3mkaa/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v1.0.0/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpslb_u23i/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_42282520-dc9b-11ef-bd11-0242ac120002c0x3mkaa/parcellation_warped.nii.gz
2025-01-27 10:49:03,418 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-01-27 10:49:04,824 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpjl5ivtrc/test.sqlite (multiple output)>
2025-01-27 10:49:05,000 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2025-01-27 10:49:05,000 - JUNIFER - INFO - Computing VBM_GM
2025-01-27 10:49:05,000 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-01-27 10:49:05,000 - JUNIFER - INFO - Parcellation parameters:
2025-01-27 10:49:05,001 - JUNIFER - INFO -      resolution: None
2025-01-27 10:49:05,001 - JUNIFER - INFO -      n_rois: 1000
2025-01-27 10:49:05,001 - JUNIFER - INFO -      yeo_networks: 7
2025-01-27 10:49:05,001 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-01-27 10:49:06,664 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v1.0.0/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-01-27 10:49:08,938 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-01-27 10:49:09,447 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpslb_u23i/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_54e63bf6-dc9c-11ef-bd11-0242ac120002alm5f3ba/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpslb_u23i/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_54e63bf6-dc9c-11ef-bd11-0242ac120002alm5f3ba/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v1.0.0/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpslb_u23i/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_54e63bf6-dc9c-11ef-bd11-0242ac120002alm5f3ba/parcellation_warped.nii.gz
2025-01-27 10:50:03,979 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-01-27 10:50:05,394 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpjl5ivtrc/test.sqlite (multiple output)>
2025-01-27 10:50:05,573 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2025-01-27 10:50:05,573 - JUNIFER - INFO - Computing VBM_GM
2025-01-27 10:50:05,573 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-01-27 10:50:05,573 - JUNIFER - INFO - Parcellation parameters:
2025-01-27 10:50:05,573 - JUNIFER - INFO -      resolution: None
2025-01-27 10:50:05,573 - JUNIFER - INFO -      n_rois: 1000
2025-01-27 10:50:05,573 - JUNIFER - INFO -      yeo_networks: 7
2025-01-27 10:50:05,573 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-01-27 10:50:06,940 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v1.0.0/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-01-27 10:50:09,231 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-01-27 10:50:09,738 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpslb_u23i/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_78d34c48-dc9c-11ef-bd11-0242ac1200025gieuyyg/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpslb_u23i/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_78d34c48-dc9c-11ef-bd11-0242ac1200025gieuyyg/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v1.0.0/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpslb_u23i/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_78d34c48-dc9c-11ef-bd11-0242ac1200025gieuyyg/parcellation_warped.nii.gz
2025-01-27 10:51:02,912 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-01-27 10:51:04,301 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpjl5ivtrc/test.sqlite (multiple output)>
2025-01-27 10:51:04,484 - JUNIFER - INFO - Marker collection fitting done
2025-01-27 10:51:04,491 - JUNIFER - INFO - Getting element sub-02
2025-01-27 10:51:04,491 - JUNIFER - INFO - Fitting pipeline
2025-01-27 10:51:04,491 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0002_MR1/mwrc1OAS1_0002_MR1_mpr_anon_fslswapdim_bet.nii.gz
2025-01-27 10:51:04,491 - JUNIFER - INFO - VBM_GM is of type NIFTI
2025-01-27 10:51:04,492 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2025-01-27 10:51:04,492 - JUNIFER - INFO - Computing VBM_GM
2025-01-27 10:51:04,492 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-01-27 10:51:04,492 - JUNIFER - INFO - Parcellation parameters:
2025-01-27 10:51:04,492 - JUNIFER - INFO -      resolution: None
2025-01-27 10:51:04,492 - JUNIFER - INFO -      n_rois: 1000
2025-01-27 10:51:04,492 - JUNIFER - INFO -      yeo_networks: 7
2025-01-27 10:51:04,493 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-01-27 10:51:05,912 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v1.0.0/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-01-27 10:51:07,779 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-01-27 10:51:08,286 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmppp4vfjx6/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_9bf9c8f0-dc9c-11ef-bd11-0242ac120002pobmb2_h/prewarp_parcellation.nii.gz -r /tmp/junifer/tmppp4vfjx6/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_9bf9c8f0-dc9c-11ef-bd11-0242ac120002pobmb2_h/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v1.0.0/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmppp4vfjx6/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_9bf9c8f0-dc9c-11ef-bd11-0242ac120002pobmb2_h/parcellation_warped.nii.gz
2025-01-27 10:52:02,174 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-01-27 10:52:03,554 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpjl5ivtrc/test.sqlite (multiple output)>
2025-01-27 10:52:03,727 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2025-01-27 10:52:03,728 - JUNIFER - INFO - Computing VBM_GM
2025-01-27 10:52:03,728 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-01-27 10:52:03,728 - JUNIFER - INFO - Parcellation parameters:
2025-01-27 10:52:03,728 - JUNIFER - INFO -      resolution: None
2025-01-27 10:52:03,728 - JUNIFER - INFO -      n_rois: 1000
2025-01-27 10:52:03,728 - JUNIFER - INFO -      yeo_networks: 7
2025-01-27 10:52:03,728 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-01-27 10:52:04,946 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v1.0.0/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-01-27 10:52:06,810 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-01-27 10:52:07,317 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmppp4vfjx6/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_bf299de6-dc9c-11ef-bd11-0242ac12000256969wre/prewarp_parcellation.nii.gz -r /tmp/junifer/tmppp4vfjx6/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_bf299de6-dc9c-11ef-bd11-0242ac12000256969wre/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v1.0.0/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmppp4vfjx6/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_bf299de6-dc9c-11ef-bd11-0242ac12000256969wre/parcellation_warped.nii.gz
2025-01-27 10:53:01,401 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-01-27 10:53:02,786 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpjl5ivtrc/test.sqlite (multiple output)>
2025-01-27 10:53:02,964 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2025-01-27 10:53:02,964 - JUNIFER - INFO - Computing VBM_GM
2025-01-27 10:53:02,964 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-01-27 10:53:02,964 - JUNIFER - INFO - Parcellation parameters:
2025-01-27 10:53:02,964 - JUNIFER - INFO -      resolution: None
2025-01-27 10:53:02,964 - JUNIFER - INFO -      n_rois: 1000
2025-01-27 10:53:02,965 - JUNIFER - INFO -      yeo_networks: 7
2025-01-27 10:53:02,965 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-01-27 10:53:04,361 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v1.0.0/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-01-27 10:53:06,329 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-01-27 10:53:06,839 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmppp4vfjx6/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_e293b99c-dc9c-11ef-bd11-0242ac120002fkk8nokg/prewarp_parcellation.nii.gz -r /tmp/junifer/tmppp4vfjx6/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_e293b99c-dc9c-11ef-bd11-0242ac120002fkk8nokg/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v1.0.0/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmppp4vfjx6/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_e293b99c-dc9c-11ef-bd11-0242ac120002fkk8nokg/parcellation_warped.nii.gz
2025-01-27 10:54:00,104 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-01-27 10:54:01,467 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpjl5ivtrc/test.sqlite (multiple output)>
2025-01-27 10:54:01,648 - JUNIFER - INFO - Marker collection fitting done
2025-01-27 10:54:01,654 - JUNIFER - INFO - Getting element sub-03
2025-01-27 10:54:01,654 - JUNIFER - INFO - Fitting pipeline
2025-01-27 10:54:01,654 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0003_MR1/mwrc1OAS1_0003_MR1_mpr_anon_fslswapdim_bet.nii.gz
2025-01-27 10:54:01,655 - JUNIFER - INFO - VBM_GM is of type NIFTI
2025-01-27 10:54:01,655 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2025-01-27 10:54:01,656 - JUNIFER - INFO - Computing VBM_GM
2025-01-27 10:54:01,656 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-01-27 10:54:01,656 - JUNIFER - INFO - Parcellation parameters:
2025-01-27 10:54:01,656 - JUNIFER - INFO -      resolution: None
2025-01-27 10:54:01,656 - JUNIFER - INFO -      n_rois: 1000
2025-01-27 10:54:01,656 - JUNIFER - INFO -      yeo_networks: 7
2025-01-27 10:54:01,656 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-01-27 10:54:02,982 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v1.0.0/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-01-27 10:54:04,837 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-01-27 10:54:05,348 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmplofpvgzu/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_0584e0fc-dc9d-11ef-bd11-0242ac120002mjdh95am/prewarp_parcellation.nii.gz -r /tmp/junifer/tmplofpvgzu/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_0584e0fc-dc9d-11ef-bd11-0242ac120002mjdh95am/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v1.0.0/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmplofpvgzu/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_0584e0fc-dc9d-11ef-bd11-0242ac120002mjdh95am/parcellation_warped.nii.gz
2025-01-27 10:54:59,553 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-01-27 10:55:00,942 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpjl5ivtrc/test.sqlite (multiple output)>
2025-01-27 10:55:01,117 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2025-01-27 10:55:01,117 - JUNIFER - INFO - Computing VBM_GM
2025-01-27 10:55:01,117 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-01-27 10:55:01,117 - JUNIFER - INFO - Parcellation parameters:
2025-01-27 10:55:01,117 - JUNIFER - INFO -      resolution: None
2025-01-27 10:55:01,117 - JUNIFER - INFO -      n_rois: 1000
2025-01-27 10:55:01,117 - JUNIFER - INFO -      yeo_networks: 7
2025-01-27 10:55:01,117 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-01-27 10:55:03,224 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v1.0.0/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-01-27 10:55:05,734 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-01-27 10:55:06,241 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmplofpvgzu/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_296cd2ae-dc9d-11ef-bd11-0242ac120002gjv_u876/prewarp_parcellation.nii.gz -r /tmp/junifer/tmplofpvgzu/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_296cd2ae-dc9d-11ef-bd11-0242ac120002gjv_u876/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v1.0.0/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmplofpvgzu/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_296cd2ae-dc9d-11ef-bd11-0242ac120002gjv_u876/parcellation_warped.nii.gz
2025-01-27 10:55:59,557 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-01-27 10:56:00,908 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpjl5ivtrc/test.sqlite (multiple output)>
2025-01-27 10:56:01,085 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2025-01-27 10:56:01,085 - JUNIFER - INFO - Computing VBM_GM
2025-01-27 10:56:01,085 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-01-27 10:56:01,085 - JUNIFER - INFO - Parcellation parameters:
2025-01-27 10:56:01,085 - JUNIFER - INFO -      resolution: None
2025-01-27 10:56:01,085 - JUNIFER - INFO -      n_rois: 1000
2025-01-27 10:56:01,085 - JUNIFER - INFO -      yeo_networks: 7
2025-01-27 10:56:01,085 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-01-27 10:56:03,053 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v1.0.0/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-01-27 10:56:05,156 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-01-27 10:56:05,663 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmplofpvgzu/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_4d162976-dc9d-11ef-bd11-0242ac120002l639o81e/prewarp_parcellation.nii.gz -r /tmp/junifer/tmplofpvgzu/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_4d162976-dc9d-11ef-bd11-0242ac120002l639o81e/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v1.0.0/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmplofpvgzu/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_4d162976-dc9d-11ef-bd11-0242ac120002l639o81e/parcellation_warped.nii.gz
2025-01-27 10:56:59,466 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-01-27 10:57:00,834 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpjl5ivtrc/test.sqlite (multiple output)>
2025-01-27 10:57:01,012 - JUNIFER - INFO - Marker collection fitting done
2025-01-27 10:57:01,019 - JUNIFER - INFO - Getting element sub-04
2025-01-27 10:57:01,019 - JUNIFER - INFO - Fitting pipeline
2025-01-27 10:57:01,020 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0004_MR1/mwrc1OAS1_0004_MR1_mpr_anon_fslswapdim_bet.nii.gz
2025-01-27 10:57:01,020 - JUNIFER - INFO - VBM_GM is of type NIFTI
2025-01-27 10:57:01,020 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2025-01-27 10:57:01,021 - JUNIFER - INFO - Computing VBM_GM
2025-01-27 10:57:01,021 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-01-27 10:57:01,021 - JUNIFER - INFO - Parcellation parameters:
2025-01-27 10:57:01,021 - JUNIFER - INFO -      resolution: None
2025-01-27 10:57:01,021 - JUNIFER - INFO -      n_rois: 1000
2025-01-27 10:57:01,021 - JUNIFER - INFO -      yeo_networks: 7
2025-01-27 10:57:01,021 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-01-27 10:57:02,532 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v1.0.0/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-01-27 10:57:04,353 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-01-27 10:57:04,862 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpojw8y0am/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_7089c390-dc9d-11ef-bd11-0242ac12000294zafmiu/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpojw8y0am/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_7089c390-dc9d-11ef-bd11-0242ac12000294zafmiu/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v1.0.0/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpojw8y0am/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_7089c390-dc9d-11ef-bd11-0242ac12000294zafmiu/parcellation_warped.nii.gz
2025-01-27 10:57:59,260 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-01-27 10:58:00,628 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpjl5ivtrc/test.sqlite (multiple output)>
2025-01-27 10:58:00,796 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2025-01-27 10:58:00,796 - JUNIFER - INFO - Computing VBM_GM
2025-01-27 10:58:00,797 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-01-27 10:58:00,797 - JUNIFER - INFO - Parcellation parameters:
2025-01-27 10:58:00,797 - JUNIFER - INFO -      resolution: None
2025-01-27 10:58:00,797 - JUNIFER - INFO -      n_rois: 1000
2025-01-27 10:58:00,797 - JUNIFER - INFO -      yeo_networks: 7
2025-01-27 10:58:00,797 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-01-27 10:58:03,425 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v1.0.0/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-01-27 10:58:05,273 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-01-27 10:58:05,780 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpojw8y0am/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_94d532c0-dc9d-11ef-bd11-0242ac120002h31erx7p/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpojw8y0am/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_94d532c0-dc9d-11ef-bd11-0242ac120002h31erx7p/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v1.0.0/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpojw8y0am/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_94d532c0-dc9d-11ef-bd11-0242ac120002h31erx7p/parcellation_warped.nii.gz
2025-01-27 10:58:59,731 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-01-27 10:59:01,088 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpjl5ivtrc/test.sqlite (multiple output)>
2025-01-27 10:59:01,265 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2025-01-27 10:59:01,265 - JUNIFER - INFO - Computing VBM_GM
2025-01-27 10:59:01,265 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-01-27 10:59:01,265 - JUNIFER - INFO - Parcellation parameters:
2025-01-27 10:59:01,265 - JUNIFER - INFO -      resolution: None
2025-01-27 10:59:01,265 - JUNIFER - INFO -      n_rois: 1000
2025-01-27 10:59:01,265 - JUNIFER - INFO -      yeo_networks: 7
2025-01-27 10:59:01,265 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-01-27 10:59:02,436 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v1.0.0/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-01-27 10:59:04,256 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-01-27 10:59:04,765 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpojw8y0am/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_b8017dd0-dc9d-11ef-bd11-0242ac120002jj50pac1/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpojw8y0am/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_b8017dd0-dc9d-11ef-bd11-0242ac120002jj50pac1/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v1.0.0/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpojw8y0am/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_b8017dd0-dc9d-11ef-bd11-0242ac120002jj50pac1/parcellation_warped.nii.gz
2025-01-27 10:59:58,306 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-01-27 10:59:59,698 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpjl5ivtrc/test.sqlite (multiple output)>
2025-01-27 10:59:59,873 - JUNIFER - INFO - Marker collection fitting done
2025-01-27 10:59:59,880 - JUNIFER - INFO - Getting element sub-05
2025-01-27 10:59:59,880 - JUNIFER - INFO - Fitting pipeline
2025-01-27 10:59:59,880 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0005_MR1/mwrc1OAS1_0005_MR1_mpr_anon_fslswapdim_bet.nii.gz
2025-01-27 10:59:59,880 - JUNIFER - INFO - VBM_GM is of type NIFTI
2025-01-27 10:59:59,881 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2025-01-27 10:59:59,881 - JUNIFER - INFO - Computing VBM_GM
2025-01-27 10:59:59,881 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-01-27 10:59:59,881 - JUNIFER - INFO - Parcellation parameters:
2025-01-27 10:59:59,881 - JUNIFER - INFO -      resolution: None
2025-01-27 10:59:59,881 - JUNIFER - INFO -      n_rois: 1000
2025-01-27 10:59:59,881 - JUNIFER - INFO -      yeo_networks: 7
2025-01-27 10:59:59,881 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-01-27 11:00:01,119 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v1.0.0/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-01-27 11:00:02,987 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-01-27 11:00:03,494 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpwdogk9re/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_dafc9ab8-dc9d-11ef-bd11-0242ac120002vi4wt989/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpwdogk9re/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_dafc9ab8-dc9d-11ef-bd11-0242ac120002vi4wt989/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v1.0.0/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpwdogk9re/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_dafc9ab8-dc9d-11ef-bd11-0242ac120002vi4wt989/parcellation_warped.nii.gz
2025-01-27 11:00:56,139 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-01-27 11:00:57,514 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpjl5ivtrc/test.sqlite (multiple output)>
2025-01-27 11:00:57,684 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2025-01-27 11:00:57,684 - JUNIFER - INFO - Computing VBM_GM
2025-01-27 11:00:57,684 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-01-27 11:00:57,684 - JUNIFER - INFO - Parcellation parameters:
2025-01-27 11:00:57,684 - JUNIFER - INFO -      resolution: None
2025-01-27 11:00:57,684 - JUNIFER - INFO -      n_rois: 1000
2025-01-27 11:00:57,684 - JUNIFER - INFO -      yeo_networks: 7
2025-01-27 11:00:57,684 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-01-27 11:00:59,400 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v1.0.0/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-01-27 11:01:01,321 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-01-27 11:01:01,831 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpwdogk9re/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_fdb8ec46-dc9d-11ef-bd11-0242ac120002d8lwv5bx/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpwdogk9re/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_fdb8ec46-dc9d-11ef-bd11-0242ac120002d8lwv5bx/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v1.0.0/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpwdogk9re/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_fdb8ec46-dc9d-11ef-bd11-0242ac120002d8lwv5bx/parcellation_warped.nii.gz
2025-01-27 11:01:56,065 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-01-27 11:01:57,427 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpjl5ivtrc/test.sqlite (multiple output)>
2025-01-27 11:01:57,600 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2025-01-27 11:01:57,600 - JUNIFER - INFO - Computing VBM_GM
2025-01-27 11:01:57,600 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-01-27 11:01:57,600 - JUNIFER - INFO - Parcellation parameters:
2025-01-27 11:01:57,600 - JUNIFER - INFO -      resolution: None
2025-01-27 11:01:57,600 - JUNIFER - INFO -      n_rois: 1000
2025-01-27 11:01:57,600 - JUNIFER - INFO -      yeo_networks: 7
2025-01-27 11:01:57,600 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-01-27 11:01:59,419 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v1.0.0/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-01-27 11:02:01,769 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-01-27 11:02:02,276 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpwdogk9re/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_217f6024-dc9e-11ef-bd11-0242ac120002d5jdm9c9/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpwdogk9re/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_217f6024-dc9e-11ef-bd11-0242ac120002d5jdm9c9/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v1.0.0/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpwdogk9re/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_217f6024-dc9e-11ef-bd11-0242ac120002d5jdm9c9/parcellation_warped.nii.gz
2025-01-27 11:02:55,909 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-01-27 11:02:57,282 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpjl5ivtrc/test.sqlite (multiple output)>
2025-01-27 11:02:57,459 - JUNIFER - INFO - Marker collection fitting done
2025-01-27 11:02:57,465 - JUNIFER - INFO - Getting element sub-06
2025-01-27 11:02:57,466 - JUNIFER - INFO - Fitting pipeline
2025-01-27 11:02:57,466 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0006_MR1/mwrc1OAS1_0006_MR1_mpr_anon_fslswapdim_bet.nii.gz
2025-01-27 11:02:57,466 - JUNIFER - INFO - VBM_GM is of type NIFTI
2025-01-27 11:02:57,467 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2025-01-27 11:02:57,467 - JUNIFER - INFO - Computing VBM_GM
2025-01-27 11:02:57,467 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-01-27 11:02:57,467 - JUNIFER - INFO - Parcellation parameters:
2025-01-27 11:02:57,467 - JUNIFER - INFO -      resolution: None
2025-01-27 11:02:57,467 - JUNIFER - INFO -      n_rois: 1000
2025-01-27 11:02:57,467 - JUNIFER - INFO -      yeo_networks: 7
2025-01-27 11:02:57,467 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-01-27 11:02:58,703 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v1.0.0/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-01-27 11:03:00,597 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-01-27 11:03:01,105 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpgzfdj0wi/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_44d53b2a-dc9e-11ef-bd11-0242ac120002k1z0njaj/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpgzfdj0wi/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_44d53b2a-dc9e-11ef-bd11-0242ac120002k1z0njaj/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v1.0.0/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpgzfdj0wi/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_44d53b2a-dc9e-11ef-bd11-0242ac120002k1z0njaj/parcellation_warped.nii.gz
2025-01-27 11:03:55,197 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-01-27 11:03:56,605 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpjl5ivtrc/test.sqlite (multiple output)>
2025-01-27 11:03:56,777 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2025-01-27 11:03:56,777 - JUNIFER - INFO - Computing VBM_GM
2025-01-27 11:03:56,777 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-01-27 11:03:56,777 - JUNIFER - INFO - Parcellation parameters:
2025-01-27 11:03:56,777 - JUNIFER - INFO -      resolution: None
2025-01-27 11:03:56,777 - JUNIFER - INFO -      n_rois: 1000
2025-01-27 11:03:56,777 - JUNIFER - INFO -      yeo_networks: 7
2025-01-27 11:03:56,777 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-01-27 11:03:58,248 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v1.0.0/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-01-27 11:04:00,069 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-01-27 11:04:00,579 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpgzfdj0wi/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_6852d152-dc9e-11ef-bd11-0242ac1200022ohj0qck/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpgzfdj0wi/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_6852d152-dc9e-11ef-bd11-0242ac1200022ohj0qck/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v1.0.0/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpgzfdj0wi/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_6852d152-dc9e-11ef-bd11-0242ac1200022ohj0qck/parcellation_warped.nii.gz
2025-01-27 11:04:53,628 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-01-27 11:04:54,971 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpjl5ivtrc/test.sqlite (multiple output)>
2025-01-27 11:04:55,145 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2025-01-27 11:04:55,145 - JUNIFER - INFO - Computing VBM_GM
2025-01-27 11:04:55,145 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-01-27 11:04:55,145 - JUNIFER - INFO - Parcellation parameters:
2025-01-27 11:04:55,145 - JUNIFER - INFO -      resolution: None
2025-01-27 11:04:55,145 - JUNIFER - INFO -      n_rois: 1000
2025-01-27 11:04:55,145 - JUNIFER - INFO -      yeo_networks: 7
2025-01-27 11:04:55,145 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-01-27 11:04:56,465 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v1.0.0/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-01-27 11:04:58,321 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-01-27 11:04:58,830 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpgzfdj0wi/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_8b06217c-dc9e-11ef-bd11-0242ac120002p1cbdld7/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpgzfdj0wi/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_8b06217c-dc9e-11ef-bd11-0242ac120002p1cbdld7/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v1.0.0/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpgzfdj0wi/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_8b06217c-dc9e-11ef-bd11-0242ac120002p1cbdld7/parcellation_warped.nii.gz
2025-01-27 11:05:52,663 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-01-27 11:05:54,040 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpjl5ivtrc/test.sqlite (multiple output)>
2025-01-27 11:05:54,213 - JUNIFER - INFO - Marker collection fitting done
2025-01-27 11:05:54,220 - JUNIFER - INFO - Getting element sub-07
2025-01-27 11:05:54,220 - JUNIFER - INFO - Fitting pipeline
2025-01-27 11:05:54,220 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0007_MR1/mwrc1OAS1_0007_MR1_mpr_anon_fslswapdim_bet.nii.gz
2025-01-27 11:05:54,220 - JUNIFER - INFO - VBM_GM is of type NIFTI
2025-01-27 11:05:54,221 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2025-01-27 11:05:54,221 - JUNIFER - INFO - Computing VBM_GM
2025-01-27 11:05:54,221 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-01-27 11:05:54,221 - JUNIFER - INFO - Parcellation parameters:
2025-01-27 11:05:54,221 - JUNIFER - INFO -      resolution: None
2025-01-27 11:05:54,221 - JUNIFER - INFO -      n_rois: 1000
2025-01-27 11:05:54,221 - JUNIFER - INFO -      yeo_networks: 7
2025-01-27 11:05:54,221 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-01-27 11:05:55,374 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v1.0.0/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-01-27 11:05:57,206 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-01-27 11:05:57,713 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpx1gm1yrh/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_ae231b6a-dc9e-11ef-bd11-0242ac120002dbvj3v9o/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpx1gm1yrh/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_ae231b6a-dc9e-11ef-bd11-0242ac120002dbvj3v9o/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v1.0.0/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpx1gm1yrh/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_ae231b6a-dc9e-11ef-bd11-0242ac120002dbvj3v9o/parcellation_warped.nii.gz
2025-01-27 11:06:51,173 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-01-27 11:06:52,579 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpjl5ivtrc/test.sqlite (multiple output)>
2025-01-27 11:06:52,751 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2025-01-27 11:06:52,751 - JUNIFER - INFO - Computing VBM_GM
2025-01-27 11:06:52,752 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-01-27 11:06:52,752 - JUNIFER - INFO - Parcellation parameters:
2025-01-27 11:06:52,752 - JUNIFER - INFO -      resolution: None
2025-01-27 11:06:52,752 - JUNIFER - INFO -      n_rois: 1000
2025-01-27 11:06:52,752 - JUNIFER - INFO -      yeo_networks: 7
2025-01-27 11:06:52,752 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-01-27 11:06:53,964 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v1.0.0/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-01-27 11:06:55,912 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-01-27 11:06:56,419 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpx1gm1yrh/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_d10f6994-dc9e-11ef-bd11-0242ac120002tacia96c/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpx1gm1yrh/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_d10f6994-dc9e-11ef-bd11-0242ac120002tacia96c/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v1.0.0/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpx1gm1yrh/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_d10f6994-dc9e-11ef-bd11-0242ac120002tacia96c/parcellation_warped.nii.gz
2025-01-27 11:07:50,100 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-01-27 11:07:51,475 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpjl5ivtrc/test.sqlite (multiple output)>
2025-01-27 11:07:51,650 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2025-01-27 11:07:51,650 - JUNIFER - INFO - Computing VBM_GM
2025-01-27 11:07:51,651 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-01-27 11:07:51,651 - JUNIFER - INFO - Parcellation parameters:
2025-01-27 11:07:51,651 - JUNIFER - INFO -      resolution: None
2025-01-27 11:07:51,651 - JUNIFER - INFO -      n_rois: 1000
2025-01-27 11:07:51,651 - JUNIFER - INFO -      yeo_networks: 7
2025-01-27 11:07:51,651 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-01-27 11:07:53,078 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v1.0.0/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-01-27 11:07:55,003 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-01-27 11:07:55,510 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpx1gm1yrh/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_f44b30fa-dc9e-11ef-bd11-0242ac120002_a5yirij/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpx1gm1yrh/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_f44b30fa-dc9e-11ef-bd11-0242ac120002_a5yirij/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v1.0.0/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpx1gm1yrh/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_f44b30fa-dc9e-11ef-bd11-0242ac120002_a5yirij/parcellation_warped.nii.gz
2025-01-27 11:08:49,176 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-01-27 11:08:50,574 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpjl5ivtrc/test.sqlite (multiple output)>
2025-01-27 11:08:50,753 - JUNIFER - INFO - Marker collection fitting done
2025-01-27 11:08:50,760 - JUNIFER - INFO - Getting element sub-08
2025-01-27 11:08:50,760 - JUNIFER - INFO - Fitting pipeline
2025-01-27 11:08:50,760 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0009_MR1/mwrc1OAS1_0009_MR1_mpr_anon_fslswapdim_bet.nii.gz
2025-01-27 11:08:50,760 - JUNIFER - INFO - VBM_GM is of type NIFTI
2025-01-27 11:08:50,761 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2025-01-27 11:08:50,761 - JUNIFER - INFO - Computing VBM_GM
2025-01-27 11:08:50,761 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-01-27 11:08:50,761 - JUNIFER - INFO - Parcellation parameters:
2025-01-27 11:08:50,761 - JUNIFER - INFO -      resolution: None
2025-01-27 11:08:50,761 - JUNIFER - INFO -      n_rois: 1000
2025-01-27 11:08:50,761 - JUNIFER - INFO -      yeo_networks: 7
2025-01-27 11:08:50,762 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-01-27 11:08:52,340 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v1.0.0/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-01-27 11:08:54,588 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-01-27 11:08:55,097 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp7oue_9pb/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_179dc2e8-dc9f-11ef-bd11-0242ac120002zkcb248s/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp7oue_9pb/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_179dc2e8-dc9f-11ef-bd11-0242ac120002zkcb248s/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v1.0.0/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmp7oue_9pb/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_179dc2e8-dc9f-11ef-bd11-0242ac120002zkcb248s/parcellation_warped.nii.gz
2025-01-27 11:09:48,698 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-01-27 11:09:50,116 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpjl5ivtrc/test.sqlite (multiple output)>
2025-01-27 11:09:50,291 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2025-01-27 11:09:50,291 - JUNIFER - INFO - Computing VBM_GM
2025-01-27 11:09:50,291 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-01-27 11:09:50,291 - JUNIFER - INFO - Parcellation parameters:
2025-01-27 11:09:50,291 - JUNIFER - INFO -      resolution: None
2025-01-27 11:09:50,291 - JUNIFER - INFO -      n_rois: 1000
2025-01-27 11:09:50,291 - JUNIFER - INFO -      yeo_networks: 7
2025-01-27 11:09:50,291 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-01-27 11:09:51,421 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v1.0.0/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-01-27 11:09:53,377 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-01-27 11:09:53,884 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp7oue_9pb/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_3ad4f59c-dc9f-11ef-bd11-0242ac1200028e4rljgy/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp7oue_9pb/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_3ad4f59c-dc9f-11ef-bd11-0242ac1200028e4rljgy/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v1.0.0/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmp7oue_9pb/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_3ad4f59c-dc9f-11ef-bd11-0242ac1200028e4rljgy/parcellation_warped.nii.gz
2025-01-27 11:10:47,281 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-01-27 11:10:48,642 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpjl5ivtrc/test.sqlite (multiple output)>
2025-01-27 11:10:48,814 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2025-01-27 11:10:48,814 - JUNIFER - INFO - Computing VBM_GM
2025-01-27 11:10:48,814 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-01-27 11:10:48,814 - JUNIFER - INFO - Parcellation parameters:
2025-01-27 11:10:48,815 - JUNIFER - INFO -      resolution: None
2025-01-27 11:10:48,815 - JUNIFER - INFO -      n_rois: 1000
2025-01-27 11:10:48,815 - JUNIFER - INFO -      yeo_networks: 7
2025-01-27 11:10:48,815 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-01-27 11:10:49,977 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v1.0.0/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-01-27 11:10:51,800 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-01-27 11:10:52,307 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp7oue_9pb/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_5dbbc496-dc9f-11ef-bd11-0242ac12000285i0le18/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp7oue_9pb/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_5dbbc496-dc9f-11ef-bd11-0242ac12000285i0le18/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v1.0.0/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmp7oue_9pb/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_5dbbc496-dc9f-11ef-bd11-0242ac12000285i0le18/parcellation_warped.nii.gz
2025-01-27 11:11:46,129 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-01-27 11:11:47,539 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpjl5ivtrc/test.sqlite (multiple output)>
2025-01-27 11:11:47,716 - JUNIFER - INFO - Marker collection fitting done
2025-01-27 11:11:47,723 - JUNIFER - INFO - Getting element sub-09
2025-01-27 11:11:47,723 - JUNIFER - INFO - Fitting pipeline
2025-01-27 11:11:47,723 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0010_MR1/mwrc1OAS1_0010_MR1_mpr_anon_fslswapdim_bet.nii.gz
2025-01-27 11:11:47,723 - JUNIFER - INFO - VBM_GM is of type NIFTI
2025-01-27 11:11:47,724 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2025-01-27 11:11:47,724 - JUNIFER - INFO - Computing VBM_GM
2025-01-27 11:11:47,724 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-01-27 11:11:47,724 - JUNIFER - INFO - Parcellation parameters:
2025-01-27 11:11:47,724 - JUNIFER - INFO -      resolution: None
2025-01-27 11:11:47,724 - JUNIFER - INFO -      n_rois: 1000
2025-01-27 11:11:47,724 - JUNIFER - INFO -      yeo_networks: 7
2025-01-27 11:11:47,724 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-01-27 11:11:49,124 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v1.0.0/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-01-27 11:11:51,040 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-01-27 11:11:51,548 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpapq36ozl/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_80fd1888-dc9f-11ef-bd11-0242ac1200023pv5gqg8/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpapq36ozl/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_80fd1888-dc9f-11ef-bd11-0242ac1200023pv5gqg8/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v1.0.0/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpapq36ozl/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_80fd1888-dc9f-11ef-bd11-0242ac1200023pv5gqg8/parcellation_warped.nii.gz
2025-01-27 11:12:45,930 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-01-27 11:12:47,347 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpjl5ivtrc/test.sqlite (multiple output)>
2025-01-27 11:12:47,518 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2025-01-27 11:12:47,518 - JUNIFER - INFO - Computing VBM_GM
2025-01-27 11:12:47,519 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-01-27 11:12:47,519 - JUNIFER - INFO - Parcellation parameters:
2025-01-27 11:12:47,519 - JUNIFER - INFO -      resolution: None
2025-01-27 11:12:47,519 - JUNIFER - INFO -      n_rois: 1000
2025-01-27 11:12:47,519 - JUNIFER - INFO -      yeo_networks: 7
2025-01-27 11:12:47,519 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-01-27 11:12:48,831 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v1.0.0/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-01-27 11:12:50,763 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-01-27 11:12:51,271 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpapq36ozl/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a4932dbe-dc9f-11ef-bd11-0242ac120002klajd0p9/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpapq36ozl/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a4932dbe-dc9f-11ef-bd11-0242ac120002klajd0p9/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v1.0.0/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpapq36ozl/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a4932dbe-dc9f-11ef-bd11-0242ac120002klajd0p9/parcellation_warped.nii.gz
2025-01-27 11:13:44,825 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-01-27 11:13:46,199 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpjl5ivtrc/test.sqlite (multiple output)>
2025-01-27 11:13:46,377 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2025-01-27 11:13:46,377 - JUNIFER - INFO - Computing VBM_GM
2025-01-27 11:13:46,377 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-01-27 11:13:46,377 - JUNIFER - INFO - Parcellation parameters:
2025-01-27 11:13:46,377 - JUNIFER - INFO -      resolution: None
2025-01-27 11:13:46,377 - JUNIFER - INFO -      n_rois: 1000
2025-01-27 11:13:46,377 - JUNIFER - INFO -      yeo_networks: 7
2025-01-27 11:13:46,377 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-01-27 11:13:47,681 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v1.0.0/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-01-27 11:13:49,776 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-01-27 11:13:50,282 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpapq36ozl/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_c7a6f7cc-dc9f-11ef-bd11-0242ac120002jf45ldtk/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpapq36ozl/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_c7a6f7cc-dc9f-11ef-bd11-0242ac120002jf45ldtk/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v1.0.0/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpapq36ozl/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_c7a6f7cc-dc9f-11ef-bd11-0242ac120002jf45ldtk/parcellation_warped.nii.gz
2025-01-27 11:14:43,691 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-01-27 11:14:45,079 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpjl5ivtrc/test.sqlite (multiple output)>
2025-01-27 11:14:45,258 - JUNIFER - INFO - Marker collection fitting done
2025-01-27 11:14:45,265 - JUNIFER - INFO - Getting element sub-10
2025-01-27 11:14:45,265 - JUNIFER - INFO - Fitting pipeline
2025-01-27 11:14:45,265 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0011_MR1/mwrc1OAS1_0011_MR1_mpr_anon_fslswapdim_bet.nii.gz
2025-01-27 11:14:45,265 - JUNIFER - INFO - VBM_GM is of type NIFTI
2025-01-27 11:14:45,266 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2025-01-27 11:14:45,266 - JUNIFER - INFO - Computing VBM_GM
2025-01-27 11:14:45,266 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-01-27 11:14:45,266 - JUNIFER - INFO - Parcellation parameters:
2025-01-27 11:14:45,266 - JUNIFER - INFO -      resolution: None
2025-01-27 11:14:45,266 - JUNIFER - INFO -      n_rois: 1000
2025-01-27 11:14:45,266 - JUNIFER - INFO -      yeo_networks: 7
2025-01-27 11:14:45,266 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-01-27 11:14:46,751 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v1.0.0/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-01-27 11:14:48,569 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-01-27 11:14:49,076 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp_xyy0y3w/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_eadcc78a-dc9f-11ef-bd11-0242ac120002a2ctrvqb/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp_xyy0y3w/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_eadcc78a-dc9f-11ef-bd11-0242ac120002a2ctrvqb/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v1.0.0/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmp_xyy0y3w/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_eadcc78a-dc9f-11ef-bd11-0242ac120002a2ctrvqb/parcellation_warped.nii.gz
2025-01-27 11:15:43,642 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-01-27 11:15:45,022 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpjl5ivtrc/test.sqlite (multiple output)>
2025-01-27 11:15:45,192 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2025-01-27 11:15:45,192 - JUNIFER - INFO - Computing VBM_GM
2025-01-27 11:15:45,192 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-01-27 11:15:45,192 - JUNIFER - INFO - Parcellation parameters:
2025-01-27 11:15:45,192 - JUNIFER - INFO -      resolution: None
2025-01-27 11:15:45,192 - JUNIFER - INFO -      n_rois: 1000
2025-01-27 11:15:45,192 - JUNIFER - INFO -      yeo_networks: 7
2025-01-27 11:15:45,192 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-01-27 11:15:46,920 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v1.0.0/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-01-27 11:15:48,842 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-01-27 11:15:49,352 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp_xyy0y3w/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_0eb9c0e0-dca0-11ef-bd11-0242ac120002hc5nxgmx/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp_xyy0y3w/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_0eb9c0e0-dca0-11ef-bd11-0242ac120002hc5nxgmx/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v1.0.0/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmp_xyy0y3w/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_0eb9c0e0-dca0-11ef-bd11-0242ac120002hc5nxgmx/parcellation_warped.nii.gz
2025-01-27 11:16:42,781 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-01-27 11:16:44,188 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpjl5ivtrc/test.sqlite (multiple output)>
2025-01-27 11:16:44,360 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2025-01-27 11:16:44,360 - JUNIFER - INFO - Computing VBM_GM
2025-01-27 11:16:44,360 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-01-27 11:16:44,360 - JUNIFER - INFO - Parcellation parameters:
2025-01-27 11:16:44,360 - JUNIFER - INFO -      resolution: None
2025-01-27 11:16:44,360 - JUNIFER - INFO -      n_rois: 1000
2025-01-27 11:16:44,360 - JUNIFER - INFO -      yeo_networks: 7
2025-01-27 11:16:44,360 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-01-27 11:16:45,559 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v1.0.0/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-01-27 11:16:47,388 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-01-27 11:16:47,896 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp_xyy0y3w/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_31ad300a-dca0-11ef-bd11-0242ac120002ioxrscw3/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp_xyy0y3w/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_31ad300a-dca0-11ef-bd11-0242ac120002ioxrscw3/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v1.0.0/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmp_xyy0y3w/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_31ad300a-dca0-11ef-bd11-0242ac120002ioxrscw3/parcellation_warped.nii.gz
2025-01-27 11:17:41,888 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-01-27 11:17:43,242 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpjl5ivtrc/test.sqlite (multiple output)>
2025-01-27 11:17:43,422 - JUNIFER - INFO - Marker collection fitting done

import tempfile

import junifer.testing.registry  # noqa: F401
from junifer.api import run


datagrabber = {
    "kind": "OasisVBMTestingDataGrabber",
}

markers = [
    {
        "name": "Schaefer1000x7_TrimMean80",
        "kind": "ParcelAggregation",
        "parcellation": "Schaefer1000x7",
        "method": "trim_mean",
        "method_params": {"proportiontocut": 0.2},
    },
    {
        "name": "Schaefer1000x7_Mean",
        "kind": "ParcelAggregation",
        "parcellation": "Schaefer1000x7",
        "method": "mean",
    },
    {
        "name": "Schaefer1000x7_Std",
        "kind": "ParcelAggregation",
        "parcellation": "Schaefer1000x7",
        "method": "std",
    },
]

storage = {
    "kind": "SQLiteFeatureStorage",
}

with tempfile.TemporaryDirectory() as tmpdir:
    uri = f"{tmpdir}/test.sqlite"
    storage["uri"] = uri
    run(
        workdir="/tmp",
        datagrabber=datagrabber,
        markers=markers,
        storage=storage,
    )