.. DO NOT EDIT. .. THIS FILE WAS AUTOMATICALLY GENERATED BY SPHINX-GALLERY. .. TO MAKE CHANGES, EDIT THE SOURCE PYTHON FILE: .. "auto_examples/run_run_gmd_mean.py" .. LINE NUMBERS ARE GIVEN BELOW. .. only:: html .. note:: :class: sphx-glr-download-link-note :ref:`Go to the end ` to download the full example code. .. rst-class:: sphx-glr-example-title .. _sphx_glr_auto_examples_run_run_gmd_mean.py: UKB VBM GMD Extraction ====================== Authors: Federico Raimondo License: BSD 3 clause .. GENERATED FROM PYTHON SOURCE LINES 9-54 .. rst-class:: sphx-glr-script-out .. code-block:: none 2025-01-27 10:40:59,001 - JUNIFER - INFO - Registering OasisVBMTestingDataGrabber in datagrabber 2025-01-27 10:40:59,001 - JUNIFER - INFO - Registering SPMAuditoryTestingDataGrabber in datagrabber 2025-01-27 10:40:59,001 - JUNIFER - INFO - Registering PartlyCloudyTestingDataGrabber in datagrabber 2025-01-27 10:41:05,237 - JUNIFER - INFO - Registering ParcelAggregation in marker 2025-01-27 10:41:05,245 - JUNIFER - INFO - Registering SQLiteFeatureStorage in storage 2025-01-27 10:41:05,245 - JUNIFER - INFO - Validating Marker Collection 2025-01-27 10:41:05,245 - JUNIFER - INFO - DataGrabber output type: ['VBM_GM'] 2025-01-27 10:41:05,245 - JUNIFER - INFO - Validating Data Reader: 2025-01-27 10:41:05,245 - JUNIFER - INFO - Data Reader output type: ['VBM_GM'] 2025-01-27 10:41:05,245 - JUNIFER - INFO - Validating Marker: Schaefer1000x7_TrimMean80 2025-01-27 10:41:05,245 - JUNIFER - INFO - Marker output type: ['vector'] 2025-01-27 10:41:05,245 - JUNIFER - INFO - Validating storage for Schaefer1000x7_TrimMean80 2025-01-27 10:41:05,245 - JUNIFER - INFO - Validating Marker: Schaefer1000x7_Mean 2025-01-27 10:41:05,245 - JUNIFER - INFO - Marker output type: ['vector'] 2025-01-27 10:41:05,245 - JUNIFER - INFO - Validating storage for Schaefer1000x7_Mean 2025-01-27 10:41:05,245 - JUNIFER - INFO - Validating Marker: Schaefer1000x7_Std 2025-01-27 10:41:05,245 - JUNIFER - INFO - Marker output type: ['vector'] 2025-01-27 10:41:05,245 - JUNIFER - INFO - Validating storage for Schaefer1000x7_Std Added README.md to /github/home/nilearn_data Dataset created in /github/home/nilearn_data/oasis1 Downloading data from https://www.nitrc.org/frs/download.php/6364/archive_dartel.tgz ... Downloaded 202293248 of 905208634 bytes (22.3%, 3.5s remaining) Downloaded 374136832 of 905208634 bytes (41.3%, 2.8s remaining) Downloaded 498491392 of 905208634 bytes (55.1%, 2.4s remaining) Downloaded 585441280 of 905208634 bytes (64.7%, 2.2s remaining) Downloaded 682614784 of 905208634 bytes (75.4%, 1.6s remaining) Downloaded 751894528 of 905208634 bytes (83.1%, 1.2s remaining) Downloaded 825376768 of 905208634 bytes (91.2%, 0.7s remaining) ...done. (8 seconds, 0 min) Extracting data from /github/home/nilearn_data/oasis1/7088b0bf88f5650db26e32ec3afdd589/archive_dartel.tgz..... done. 2025-01-27 10:41:19,400 - JUNIFER - INFO - Getting element sub-01 2025-01-27 10:41:19,400 - JUNIFER - INFO - Fitting pipeline 2025-01-27 10:41:19,400 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0001_MR1/mwrc1OAS1_0001_MR1_mpr_anon_fslswapdim_bet.nii.gz 2025-01-27 10:41:19,400 - JUNIFER - INFO - VBM_GM is of type NIFTI 2025-01-27 10:41:19,401 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80 2025-01-27 10:41:19,401 - JUNIFER - INFO - Computing VBM_GM 2025-01-27 10:41:19,401 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2025-01-27 10:41:19,402 - JUNIFER - INFO - Parcellation parameters: 2025-01-27 10:41:19,402 - JUNIFER - INFO - resolution: None 2025-01-27 10:41:19,402 - JUNIFER - INFO - n_rois: 1000 2025-01-27 10:41:19,402 - JUNIFER - INFO - yeo_networks: 7 2025-01-27 10:41:19,402 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2025-01-27 10:41:25,721 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v1.0.0/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz 2025-01-27 10:48:09,542 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1) Downloading https://templateflow.s3.amazonaws.com/tpl-MNI152Lin/tpl-MNI152Lin_res-01_T1w.nii.gz 0%| | 0.00/10.7M [00:00 2025-01-27 10:49:05,000 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean 2025-01-27 10:49:05,000 - JUNIFER - INFO - Computing VBM_GM 2025-01-27 10:49:05,000 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2025-01-27 10:49:05,000 - JUNIFER - INFO - Parcellation parameters: 2025-01-27 10:49:05,001 - JUNIFER - INFO - resolution: None 2025-01-27 10:49:05,001 - JUNIFER - INFO - n_rois: 1000 2025-01-27 10:49:05,001 - JUNIFER - INFO - yeo_networks: 7 2025-01-27 10:49:05,001 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2025-01-27 10:49:06,664 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v1.0.0/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz 2025-01-27 10:49:08,938 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1) 2025-01-27 10:49:09,447 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpslb_u23i/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_54e63bf6-dc9c-11ef-bd11-0242ac120002alm5f3ba/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpslb_u23i/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_54e63bf6-dc9c-11ef-bd11-0242ac120002alm5f3ba/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v1.0.0/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpslb_u23i/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_54e63bf6-dc9c-11ef-bd11-0242ac120002alm5f3ba/parcellation_warped.nii.gz 2025-01-27 10:50:03,979 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2025-01-27 10:50:05,394 - JUNIFER - INFO - Storing in 2025-01-27 10:50:05,573 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std 2025-01-27 10:50:05,573 - JUNIFER - INFO - Computing VBM_GM 2025-01-27 10:50:05,573 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2025-01-27 10:50:05,573 - JUNIFER - INFO - Parcellation parameters: 2025-01-27 10:50:05,573 - JUNIFER - INFO - resolution: None 2025-01-27 10:50:05,573 - JUNIFER - INFO - n_rois: 1000 2025-01-27 10:50:05,573 - JUNIFER - INFO - yeo_networks: 7 2025-01-27 10:50:05,573 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2025-01-27 10:50:06,940 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v1.0.0/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz 2025-01-27 10:50:09,231 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1) 2025-01-27 10:50:09,738 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpslb_u23i/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_78d34c48-dc9c-11ef-bd11-0242ac1200025gieuyyg/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpslb_u23i/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_78d34c48-dc9c-11ef-bd11-0242ac1200025gieuyyg/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v1.0.0/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpslb_u23i/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_78d34c48-dc9c-11ef-bd11-0242ac1200025gieuyyg/parcellation_warped.nii.gz 2025-01-27 10:51:02,912 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2025-01-27 10:51:04,301 - JUNIFER - INFO - Storing in 2025-01-27 10:51:04,484 - JUNIFER - INFO - Marker collection fitting done 2025-01-27 10:51:04,491 - JUNIFER - INFO - Getting element sub-02 2025-01-27 10:51:04,491 - JUNIFER - INFO - Fitting pipeline 2025-01-27 10:51:04,491 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0002_MR1/mwrc1OAS1_0002_MR1_mpr_anon_fslswapdim_bet.nii.gz 2025-01-27 10:51:04,491 - JUNIFER - INFO - VBM_GM is of type NIFTI 2025-01-27 10:51:04,492 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80 2025-01-27 10:51:04,492 - JUNIFER - INFO - Computing VBM_GM 2025-01-27 10:51:04,492 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2025-01-27 10:51:04,492 - JUNIFER - INFO - Parcellation parameters: 2025-01-27 10:51:04,492 - JUNIFER - INFO - resolution: None 2025-01-27 10:51:04,492 - JUNIFER - INFO - n_rois: 1000 2025-01-27 10:51:04,492 - JUNIFER - INFO - yeo_networks: 7 2025-01-27 10:51:04,493 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2025-01-27 10:51:05,912 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v1.0.0/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz 2025-01-27 10:51:07,779 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1) 2025-01-27 10:51:08,286 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmppp4vfjx6/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_9bf9c8f0-dc9c-11ef-bd11-0242ac120002pobmb2_h/prewarp_parcellation.nii.gz -r /tmp/junifer/tmppp4vfjx6/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_9bf9c8f0-dc9c-11ef-bd11-0242ac120002pobmb2_h/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v1.0.0/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmppp4vfjx6/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_9bf9c8f0-dc9c-11ef-bd11-0242ac120002pobmb2_h/parcellation_warped.nii.gz 2025-01-27 10:52:02,174 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2025-01-27 10:52:03,554 - JUNIFER - INFO - Storing in 2025-01-27 10:52:03,727 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean 2025-01-27 10:52:03,728 - JUNIFER - INFO - Computing VBM_GM 2025-01-27 10:52:03,728 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2025-01-27 10:52:03,728 - JUNIFER - INFO - Parcellation parameters: 2025-01-27 10:52:03,728 - JUNIFER - INFO - resolution: None 2025-01-27 10:52:03,728 - JUNIFER - INFO - n_rois: 1000 2025-01-27 10:52:03,728 - JUNIFER - INFO - yeo_networks: 7 2025-01-27 10:52:03,728 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2025-01-27 10:52:04,946 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v1.0.0/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz 2025-01-27 10:52:06,810 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1) 2025-01-27 10:52:07,317 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmppp4vfjx6/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_bf299de6-dc9c-11ef-bd11-0242ac12000256969wre/prewarp_parcellation.nii.gz -r /tmp/junifer/tmppp4vfjx6/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_bf299de6-dc9c-11ef-bd11-0242ac12000256969wre/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v1.0.0/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmppp4vfjx6/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_bf299de6-dc9c-11ef-bd11-0242ac12000256969wre/parcellation_warped.nii.gz 2025-01-27 10:53:01,401 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2025-01-27 10:53:02,786 - JUNIFER - INFO - Storing in 2025-01-27 10:53:02,964 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std 2025-01-27 10:53:02,964 - JUNIFER - INFO - Computing VBM_GM 2025-01-27 10:53:02,964 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2025-01-27 10:53:02,964 - JUNIFER - INFO - Parcellation parameters: 2025-01-27 10:53:02,964 - JUNIFER - INFO - resolution: None 2025-01-27 10:53:02,964 - JUNIFER - INFO - n_rois: 1000 2025-01-27 10:53:02,965 - JUNIFER - INFO - yeo_networks: 7 2025-01-27 10:53:02,965 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2025-01-27 10:53:04,361 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v1.0.0/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz 2025-01-27 10:53:06,329 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1) 2025-01-27 10:53:06,839 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmppp4vfjx6/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_e293b99c-dc9c-11ef-bd11-0242ac120002fkk8nokg/prewarp_parcellation.nii.gz -r /tmp/junifer/tmppp4vfjx6/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_e293b99c-dc9c-11ef-bd11-0242ac120002fkk8nokg/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v1.0.0/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmppp4vfjx6/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_e293b99c-dc9c-11ef-bd11-0242ac120002fkk8nokg/parcellation_warped.nii.gz 2025-01-27 10:54:00,104 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2025-01-27 10:54:01,467 - JUNIFER - INFO - Storing in 2025-01-27 10:54:01,648 - JUNIFER - INFO - Marker collection fitting done 2025-01-27 10:54:01,654 - JUNIFER - INFO - Getting element sub-03 2025-01-27 10:54:01,654 - JUNIFER - INFO - Fitting pipeline 2025-01-27 10:54:01,654 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0003_MR1/mwrc1OAS1_0003_MR1_mpr_anon_fslswapdim_bet.nii.gz 2025-01-27 10:54:01,655 - JUNIFER - INFO - VBM_GM is of type NIFTI 2025-01-27 10:54:01,655 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80 2025-01-27 10:54:01,656 - JUNIFER - INFO - Computing VBM_GM 2025-01-27 10:54:01,656 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2025-01-27 10:54:01,656 - JUNIFER - INFO - Parcellation parameters: 2025-01-27 10:54:01,656 - JUNIFER - INFO - resolution: None 2025-01-27 10:54:01,656 - JUNIFER - INFO - n_rois: 1000 2025-01-27 10:54:01,656 - JUNIFER - INFO - yeo_networks: 7 2025-01-27 10:54:01,656 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2025-01-27 10:54:02,982 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v1.0.0/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz 2025-01-27 10:54:04,837 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1) 2025-01-27 10:54:05,348 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmplofpvgzu/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_0584e0fc-dc9d-11ef-bd11-0242ac120002mjdh95am/prewarp_parcellation.nii.gz -r /tmp/junifer/tmplofpvgzu/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_0584e0fc-dc9d-11ef-bd11-0242ac120002mjdh95am/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v1.0.0/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmplofpvgzu/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_0584e0fc-dc9d-11ef-bd11-0242ac120002mjdh95am/parcellation_warped.nii.gz 2025-01-27 10:54:59,553 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2025-01-27 10:55:00,942 - JUNIFER - INFO - Storing in 2025-01-27 10:55:01,117 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean 2025-01-27 10:55:01,117 - JUNIFER - INFO - Computing VBM_GM 2025-01-27 10:55:01,117 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2025-01-27 10:55:01,117 - JUNIFER - INFO - Parcellation parameters: 2025-01-27 10:55:01,117 - JUNIFER - INFO - resolution: None 2025-01-27 10:55:01,117 - JUNIFER - INFO - n_rois: 1000 2025-01-27 10:55:01,117 - JUNIFER - INFO - yeo_networks: 7 2025-01-27 10:55:01,117 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2025-01-27 10:55:03,224 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v1.0.0/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz 2025-01-27 10:55:05,734 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1) 2025-01-27 10:55:06,241 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmplofpvgzu/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_296cd2ae-dc9d-11ef-bd11-0242ac120002gjv_u876/prewarp_parcellation.nii.gz -r /tmp/junifer/tmplofpvgzu/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_296cd2ae-dc9d-11ef-bd11-0242ac120002gjv_u876/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v1.0.0/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmplofpvgzu/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_296cd2ae-dc9d-11ef-bd11-0242ac120002gjv_u876/parcellation_warped.nii.gz 2025-01-27 10:55:59,557 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2025-01-27 10:56:00,908 - JUNIFER - INFO - Storing in 2025-01-27 10:56:01,085 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std 2025-01-27 10:56:01,085 - JUNIFER - INFO - Computing VBM_GM 2025-01-27 10:56:01,085 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2025-01-27 10:56:01,085 - JUNIFER - INFO - Parcellation parameters: 2025-01-27 10:56:01,085 - JUNIFER - INFO - resolution: None 2025-01-27 10:56:01,085 - JUNIFER - INFO - n_rois: 1000 2025-01-27 10:56:01,085 - JUNIFER - INFO - yeo_networks: 7 2025-01-27 10:56:01,085 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2025-01-27 10:56:03,053 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v1.0.0/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz 2025-01-27 10:56:05,156 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1) 2025-01-27 10:56:05,663 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmplofpvgzu/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_4d162976-dc9d-11ef-bd11-0242ac120002l639o81e/prewarp_parcellation.nii.gz -r /tmp/junifer/tmplofpvgzu/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_4d162976-dc9d-11ef-bd11-0242ac120002l639o81e/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v1.0.0/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmplofpvgzu/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_4d162976-dc9d-11ef-bd11-0242ac120002l639o81e/parcellation_warped.nii.gz 2025-01-27 10:56:59,466 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2025-01-27 10:57:00,834 - JUNIFER - INFO - Storing in 2025-01-27 10:57:01,012 - JUNIFER - INFO - Marker collection fitting done 2025-01-27 10:57:01,019 - JUNIFER - INFO - Getting element sub-04 2025-01-27 10:57:01,019 - JUNIFER - INFO - Fitting pipeline 2025-01-27 10:57:01,020 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0004_MR1/mwrc1OAS1_0004_MR1_mpr_anon_fslswapdim_bet.nii.gz 2025-01-27 10:57:01,020 - JUNIFER - INFO - VBM_GM is of type NIFTI 2025-01-27 10:57:01,020 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80 2025-01-27 10:57:01,021 - JUNIFER - INFO - Computing VBM_GM 2025-01-27 10:57:01,021 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2025-01-27 10:57:01,021 - JUNIFER - INFO - Parcellation parameters: 2025-01-27 10:57:01,021 - JUNIFER - INFO - resolution: None 2025-01-27 10:57:01,021 - JUNIFER - INFO - n_rois: 1000 2025-01-27 10:57:01,021 - JUNIFER - INFO - yeo_networks: 7 2025-01-27 10:57:01,021 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2025-01-27 10:57:02,532 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v1.0.0/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz 2025-01-27 10:57:04,353 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1) 2025-01-27 10:57:04,862 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpojw8y0am/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_7089c390-dc9d-11ef-bd11-0242ac12000294zafmiu/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpojw8y0am/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_7089c390-dc9d-11ef-bd11-0242ac12000294zafmiu/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v1.0.0/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpojw8y0am/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_7089c390-dc9d-11ef-bd11-0242ac12000294zafmiu/parcellation_warped.nii.gz 2025-01-27 10:57:59,260 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2025-01-27 10:58:00,628 - JUNIFER - INFO - Storing in 2025-01-27 10:58:00,796 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean 2025-01-27 10:58:00,796 - JUNIFER - INFO - Computing VBM_GM 2025-01-27 10:58:00,797 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2025-01-27 10:58:00,797 - JUNIFER - INFO - Parcellation parameters: 2025-01-27 10:58:00,797 - JUNIFER - INFO - resolution: None 2025-01-27 10:58:00,797 - JUNIFER - INFO - n_rois: 1000 2025-01-27 10:58:00,797 - JUNIFER - INFO - yeo_networks: 7 2025-01-27 10:58:00,797 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2025-01-27 10:58:03,425 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v1.0.0/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz 2025-01-27 10:58:05,273 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1) 2025-01-27 10:58:05,780 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpojw8y0am/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_94d532c0-dc9d-11ef-bd11-0242ac120002h31erx7p/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpojw8y0am/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_94d532c0-dc9d-11ef-bd11-0242ac120002h31erx7p/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v1.0.0/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpojw8y0am/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_94d532c0-dc9d-11ef-bd11-0242ac120002h31erx7p/parcellation_warped.nii.gz 2025-01-27 10:58:59,731 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2025-01-27 10:59:01,088 - JUNIFER - INFO - Storing in 2025-01-27 10:59:01,265 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std 2025-01-27 10:59:01,265 - JUNIFER - INFO - Computing VBM_GM 2025-01-27 10:59:01,265 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2025-01-27 10:59:01,265 - JUNIFER - INFO - Parcellation parameters: 2025-01-27 10:59:01,265 - JUNIFER - INFO - resolution: None 2025-01-27 10:59:01,265 - JUNIFER - INFO - n_rois: 1000 2025-01-27 10:59:01,265 - JUNIFER - INFO - yeo_networks: 7 2025-01-27 10:59:01,265 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2025-01-27 10:59:02,436 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v1.0.0/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz 2025-01-27 10:59:04,256 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1) 2025-01-27 10:59:04,765 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpojw8y0am/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_b8017dd0-dc9d-11ef-bd11-0242ac120002jj50pac1/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpojw8y0am/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_b8017dd0-dc9d-11ef-bd11-0242ac120002jj50pac1/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v1.0.0/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpojw8y0am/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_b8017dd0-dc9d-11ef-bd11-0242ac120002jj50pac1/parcellation_warped.nii.gz 2025-01-27 10:59:58,306 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2025-01-27 10:59:59,698 - JUNIFER - INFO - Storing in 2025-01-27 10:59:59,873 - JUNIFER - INFO - Marker collection fitting done 2025-01-27 10:59:59,880 - JUNIFER - INFO - Getting element sub-05 2025-01-27 10:59:59,880 - JUNIFER - INFO - Fitting pipeline 2025-01-27 10:59:59,880 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0005_MR1/mwrc1OAS1_0005_MR1_mpr_anon_fslswapdim_bet.nii.gz 2025-01-27 10:59:59,880 - JUNIFER - INFO - VBM_GM is of type NIFTI 2025-01-27 10:59:59,881 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80 2025-01-27 10:59:59,881 - JUNIFER - INFO - Computing VBM_GM 2025-01-27 10:59:59,881 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2025-01-27 10:59:59,881 - JUNIFER - INFO - Parcellation parameters: 2025-01-27 10:59:59,881 - JUNIFER - INFO - resolution: None 2025-01-27 10:59:59,881 - JUNIFER - INFO - n_rois: 1000 2025-01-27 10:59:59,881 - JUNIFER - INFO - yeo_networks: 7 2025-01-27 10:59:59,881 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2025-01-27 11:00:01,119 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v1.0.0/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz 2025-01-27 11:00:02,987 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1) 2025-01-27 11:00:03,494 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpwdogk9re/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_dafc9ab8-dc9d-11ef-bd11-0242ac120002vi4wt989/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpwdogk9re/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_dafc9ab8-dc9d-11ef-bd11-0242ac120002vi4wt989/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v1.0.0/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpwdogk9re/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_dafc9ab8-dc9d-11ef-bd11-0242ac120002vi4wt989/parcellation_warped.nii.gz 2025-01-27 11:00:56,139 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2025-01-27 11:00:57,514 - JUNIFER - INFO - Storing in 2025-01-27 11:00:57,684 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean 2025-01-27 11:00:57,684 - JUNIFER - INFO - Computing VBM_GM 2025-01-27 11:00:57,684 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2025-01-27 11:00:57,684 - JUNIFER - INFO - Parcellation parameters: 2025-01-27 11:00:57,684 - JUNIFER - INFO - resolution: None 2025-01-27 11:00:57,684 - JUNIFER - INFO - n_rois: 1000 2025-01-27 11:00:57,684 - JUNIFER - INFO - yeo_networks: 7 2025-01-27 11:00:57,684 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2025-01-27 11:00:59,400 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v1.0.0/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz 2025-01-27 11:01:01,321 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1) 2025-01-27 11:01:01,831 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpwdogk9re/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_fdb8ec46-dc9d-11ef-bd11-0242ac120002d8lwv5bx/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpwdogk9re/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_fdb8ec46-dc9d-11ef-bd11-0242ac120002d8lwv5bx/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v1.0.0/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpwdogk9re/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_fdb8ec46-dc9d-11ef-bd11-0242ac120002d8lwv5bx/parcellation_warped.nii.gz 2025-01-27 11:01:56,065 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2025-01-27 11:01:57,427 - JUNIFER - INFO - Storing in 2025-01-27 11:01:57,600 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std 2025-01-27 11:01:57,600 - JUNIFER - INFO - Computing VBM_GM 2025-01-27 11:01:57,600 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2025-01-27 11:01:57,600 - JUNIFER - INFO - Parcellation parameters: 2025-01-27 11:01:57,600 - JUNIFER - INFO - resolution: None 2025-01-27 11:01:57,600 - JUNIFER - INFO - n_rois: 1000 2025-01-27 11:01:57,600 - JUNIFER - INFO - yeo_networks: 7 2025-01-27 11:01:57,600 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2025-01-27 11:01:59,419 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v1.0.0/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz 2025-01-27 11:02:01,769 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1) 2025-01-27 11:02:02,276 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpwdogk9re/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_217f6024-dc9e-11ef-bd11-0242ac120002d5jdm9c9/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpwdogk9re/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_217f6024-dc9e-11ef-bd11-0242ac120002d5jdm9c9/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v1.0.0/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpwdogk9re/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_217f6024-dc9e-11ef-bd11-0242ac120002d5jdm9c9/parcellation_warped.nii.gz 2025-01-27 11:02:55,909 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2025-01-27 11:02:57,282 - JUNIFER - INFO - Storing in 2025-01-27 11:02:57,459 - JUNIFER - INFO - Marker collection fitting done 2025-01-27 11:02:57,465 - JUNIFER - INFO - Getting element sub-06 2025-01-27 11:02:57,466 - JUNIFER - INFO - Fitting pipeline 2025-01-27 11:02:57,466 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0006_MR1/mwrc1OAS1_0006_MR1_mpr_anon_fslswapdim_bet.nii.gz 2025-01-27 11:02:57,466 - JUNIFER - INFO - VBM_GM is of type NIFTI 2025-01-27 11:02:57,467 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80 2025-01-27 11:02:57,467 - JUNIFER - INFO - Computing VBM_GM 2025-01-27 11:02:57,467 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2025-01-27 11:02:57,467 - JUNIFER - INFO - Parcellation parameters: 2025-01-27 11:02:57,467 - JUNIFER - INFO - resolution: None 2025-01-27 11:02:57,467 - JUNIFER - INFO - n_rois: 1000 2025-01-27 11:02:57,467 - JUNIFER - INFO - yeo_networks: 7 2025-01-27 11:02:57,467 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2025-01-27 11:02:58,703 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v1.0.0/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz 2025-01-27 11:03:00,597 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1) 2025-01-27 11:03:01,105 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpgzfdj0wi/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_44d53b2a-dc9e-11ef-bd11-0242ac120002k1z0njaj/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpgzfdj0wi/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_44d53b2a-dc9e-11ef-bd11-0242ac120002k1z0njaj/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v1.0.0/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpgzfdj0wi/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_44d53b2a-dc9e-11ef-bd11-0242ac120002k1z0njaj/parcellation_warped.nii.gz 2025-01-27 11:03:55,197 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2025-01-27 11:03:56,605 - JUNIFER - INFO - Storing in 2025-01-27 11:03:56,777 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean 2025-01-27 11:03:56,777 - JUNIFER - INFO - Computing VBM_GM 2025-01-27 11:03:56,777 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2025-01-27 11:03:56,777 - JUNIFER - INFO - Parcellation parameters: 2025-01-27 11:03:56,777 - JUNIFER - INFO - resolution: None 2025-01-27 11:03:56,777 - JUNIFER - INFO - n_rois: 1000 2025-01-27 11:03:56,777 - JUNIFER - INFO - yeo_networks: 7 2025-01-27 11:03:56,777 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2025-01-27 11:03:58,248 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v1.0.0/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz 2025-01-27 11:04:00,069 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1) 2025-01-27 11:04:00,579 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpgzfdj0wi/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_6852d152-dc9e-11ef-bd11-0242ac1200022ohj0qck/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpgzfdj0wi/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_6852d152-dc9e-11ef-bd11-0242ac1200022ohj0qck/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v1.0.0/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpgzfdj0wi/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_6852d152-dc9e-11ef-bd11-0242ac1200022ohj0qck/parcellation_warped.nii.gz 2025-01-27 11:04:53,628 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2025-01-27 11:04:54,971 - JUNIFER - INFO - Storing in 2025-01-27 11:04:55,145 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std 2025-01-27 11:04:55,145 - JUNIFER - INFO - Computing VBM_GM 2025-01-27 11:04:55,145 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2025-01-27 11:04:55,145 - JUNIFER - INFO - Parcellation parameters: 2025-01-27 11:04:55,145 - JUNIFER - INFO - resolution: None 2025-01-27 11:04:55,145 - JUNIFER - INFO - n_rois: 1000 2025-01-27 11:04:55,145 - JUNIFER - INFO - yeo_networks: 7 2025-01-27 11:04:55,145 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2025-01-27 11:04:56,465 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v1.0.0/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz 2025-01-27 11:04:58,321 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1) 2025-01-27 11:04:58,830 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpgzfdj0wi/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_8b06217c-dc9e-11ef-bd11-0242ac120002p1cbdld7/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpgzfdj0wi/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_8b06217c-dc9e-11ef-bd11-0242ac120002p1cbdld7/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v1.0.0/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpgzfdj0wi/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_8b06217c-dc9e-11ef-bd11-0242ac120002p1cbdld7/parcellation_warped.nii.gz 2025-01-27 11:05:52,663 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2025-01-27 11:05:54,040 - JUNIFER - INFO - Storing in 2025-01-27 11:05:54,213 - JUNIFER - INFO - Marker collection fitting done 2025-01-27 11:05:54,220 - JUNIFER - INFO - Getting element sub-07 2025-01-27 11:05:54,220 - JUNIFER - INFO - Fitting pipeline 2025-01-27 11:05:54,220 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0007_MR1/mwrc1OAS1_0007_MR1_mpr_anon_fslswapdim_bet.nii.gz 2025-01-27 11:05:54,220 - JUNIFER - INFO - VBM_GM is of type NIFTI 2025-01-27 11:05:54,221 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80 2025-01-27 11:05:54,221 - JUNIFER - INFO - Computing VBM_GM 2025-01-27 11:05:54,221 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2025-01-27 11:05:54,221 - JUNIFER - INFO - Parcellation parameters: 2025-01-27 11:05:54,221 - JUNIFER - INFO - resolution: None 2025-01-27 11:05:54,221 - JUNIFER - INFO - n_rois: 1000 2025-01-27 11:05:54,221 - JUNIFER - INFO - yeo_networks: 7 2025-01-27 11:05:54,221 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2025-01-27 11:05:55,374 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v1.0.0/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz 2025-01-27 11:05:57,206 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1) 2025-01-27 11:05:57,713 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpx1gm1yrh/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_ae231b6a-dc9e-11ef-bd11-0242ac120002dbvj3v9o/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpx1gm1yrh/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_ae231b6a-dc9e-11ef-bd11-0242ac120002dbvj3v9o/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v1.0.0/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpx1gm1yrh/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_ae231b6a-dc9e-11ef-bd11-0242ac120002dbvj3v9o/parcellation_warped.nii.gz 2025-01-27 11:06:51,173 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2025-01-27 11:06:52,579 - JUNIFER - INFO - Storing in 2025-01-27 11:06:52,751 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean 2025-01-27 11:06:52,751 - JUNIFER - INFO - Computing VBM_GM 2025-01-27 11:06:52,752 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2025-01-27 11:06:52,752 - JUNIFER - INFO - Parcellation parameters: 2025-01-27 11:06:52,752 - JUNIFER - INFO - resolution: None 2025-01-27 11:06:52,752 - JUNIFER - INFO - n_rois: 1000 2025-01-27 11:06:52,752 - JUNIFER - INFO - yeo_networks: 7 2025-01-27 11:06:52,752 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2025-01-27 11:06:53,964 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v1.0.0/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz 2025-01-27 11:06:55,912 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1) 2025-01-27 11:06:56,419 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpx1gm1yrh/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_d10f6994-dc9e-11ef-bd11-0242ac120002tacia96c/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpx1gm1yrh/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_d10f6994-dc9e-11ef-bd11-0242ac120002tacia96c/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v1.0.0/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpx1gm1yrh/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_d10f6994-dc9e-11ef-bd11-0242ac120002tacia96c/parcellation_warped.nii.gz 2025-01-27 11:07:50,100 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2025-01-27 11:07:51,475 - JUNIFER - INFO - Storing in 2025-01-27 11:07:51,650 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std 2025-01-27 11:07:51,650 - JUNIFER - INFO - Computing VBM_GM 2025-01-27 11:07:51,651 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2025-01-27 11:07:51,651 - JUNIFER - INFO - Parcellation parameters: 2025-01-27 11:07:51,651 - JUNIFER - INFO - resolution: None 2025-01-27 11:07:51,651 - JUNIFER - INFO - n_rois: 1000 2025-01-27 11:07:51,651 - JUNIFER - INFO - yeo_networks: 7 2025-01-27 11:07:51,651 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2025-01-27 11:07:53,078 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v1.0.0/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz 2025-01-27 11:07:55,003 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1) 2025-01-27 11:07:55,510 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpx1gm1yrh/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_f44b30fa-dc9e-11ef-bd11-0242ac120002_a5yirij/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpx1gm1yrh/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_f44b30fa-dc9e-11ef-bd11-0242ac120002_a5yirij/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v1.0.0/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpx1gm1yrh/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_f44b30fa-dc9e-11ef-bd11-0242ac120002_a5yirij/parcellation_warped.nii.gz 2025-01-27 11:08:49,176 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2025-01-27 11:08:50,574 - JUNIFER - INFO - Storing in 2025-01-27 11:08:50,753 - JUNIFER - INFO - Marker collection fitting done 2025-01-27 11:08:50,760 - JUNIFER - INFO - Getting element sub-08 2025-01-27 11:08:50,760 - JUNIFER - INFO - Fitting pipeline 2025-01-27 11:08:50,760 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0009_MR1/mwrc1OAS1_0009_MR1_mpr_anon_fslswapdim_bet.nii.gz 2025-01-27 11:08:50,760 - JUNIFER - INFO - VBM_GM is of type NIFTI 2025-01-27 11:08:50,761 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80 2025-01-27 11:08:50,761 - JUNIFER - INFO - Computing VBM_GM 2025-01-27 11:08:50,761 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2025-01-27 11:08:50,761 - JUNIFER - INFO - Parcellation parameters: 2025-01-27 11:08:50,761 - JUNIFER - INFO - resolution: None 2025-01-27 11:08:50,761 - JUNIFER - INFO - n_rois: 1000 2025-01-27 11:08:50,761 - JUNIFER - INFO - yeo_networks: 7 2025-01-27 11:08:50,762 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2025-01-27 11:08:52,340 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v1.0.0/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz 2025-01-27 11:08:54,588 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1) 2025-01-27 11:08:55,097 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp7oue_9pb/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_179dc2e8-dc9f-11ef-bd11-0242ac120002zkcb248s/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp7oue_9pb/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_179dc2e8-dc9f-11ef-bd11-0242ac120002zkcb248s/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v1.0.0/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmp7oue_9pb/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_179dc2e8-dc9f-11ef-bd11-0242ac120002zkcb248s/parcellation_warped.nii.gz 2025-01-27 11:09:48,698 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2025-01-27 11:09:50,116 - JUNIFER - INFO - Storing in 2025-01-27 11:09:50,291 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean 2025-01-27 11:09:50,291 - JUNIFER - INFO - Computing VBM_GM 2025-01-27 11:09:50,291 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2025-01-27 11:09:50,291 - JUNIFER - INFO - Parcellation parameters: 2025-01-27 11:09:50,291 - JUNIFER - INFO - resolution: None 2025-01-27 11:09:50,291 - JUNIFER - INFO - n_rois: 1000 2025-01-27 11:09:50,291 - JUNIFER - INFO - yeo_networks: 7 2025-01-27 11:09:50,291 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2025-01-27 11:09:51,421 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v1.0.0/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz 2025-01-27 11:09:53,377 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1) 2025-01-27 11:09:53,884 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp7oue_9pb/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_3ad4f59c-dc9f-11ef-bd11-0242ac1200028e4rljgy/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp7oue_9pb/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_3ad4f59c-dc9f-11ef-bd11-0242ac1200028e4rljgy/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v1.0.0/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmp7oue_9pb/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_3ad4f59c-dc9f-11ef-bd11-0242ac1200028e4rljgy/parcellation_warped.nii.gz 2025-01-27 11:10:47,281 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2025-01-27 11:10:48,642 - JUNIFER - INFO - Storing in 2025-01-27 11:10:48,814 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std 2025-01-27 11:10:48,814 - JUNIFER - INFO - Computing VBM_GM 2025-01-27 11:10:48,814 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2025-01-27 11:10:48,814 - JUNIFER - INFO - Parcellation parameters: 2025-01-27 11:10:48,815 - JUNIFER - INFO - resolution: None 2025-01-27 11:10:48,815 - JUNIFER - INFO - n_rois: 1000 2025-01-27 11:10:48,815 - JUNIFER - INFO - yeo_networks: 7 2025-01-27 11:10:48,815 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2025-01-27 11:10:49,977 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v1.0.0/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz 2025-01-27 11:10:51,800 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1) 2025-01-27 11:10:52,307 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp7oue_9pb/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_5dbbc496-dc9f-11ef-bd11-0242ac12000285i0le18/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp7oue_9pb/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_5dbbc496-dc9f-11ef-bd11-0242ac12000285i0le18/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v1.0.0/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmp7oue_9pb/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_5dbbc496-dc9f-11ef-bd11-0242ac12000285i0le18/parcellation_warped.nii.gz 2025-01-27 11:11:46,129 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2025-01-27 11:11:47,539 - JUNIFER - INFO - Storing in 2025-01-27 11:11:47,716 - JUNIFER - INFO - Marker collection fitting done 2025-01-27 11:11:47,723 - JUNIFER - INFO - Getting element sub-09 2025-01-27 11:11:47,723 - JUNIFER - INFO - Fitting pipeline 2025-01-27 11:11:47,723 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0010_MR1/mwrc1OAS1_0010_MR1_mpr_anon_fslswapdim_bet.nii.gz 2025-01-27 11:11:47,723 - JUNIFER - INFO - VBM_GM is of type NIFTI 2025-01-27 11:11:47,724 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80 2025-01-27 11:11:47,724 - JUNIFER - INFO - Computing VBM_GM 2025-01-27 11:11:47,724 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2025-01-27 11:11:47,724 - JUNIFER - INFO - Parcellation parameters: 2025-01-27 11:11:47,724 - JUNIFER - INFO - resolution: None 2025-01-27 11:11:47,724 - JUNIFER - INFO - n_rois: 1000 2025-01-27 11:11:47,724 - JUNIFER - INFO - yeo_networks: 7 2025-01-27 11:11:47,724 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2025-01-27 11:11:49,124 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v1.0.0/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz 2025-01-27 11:11:51,040 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1) 2025-01-27 11:11:51,548 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpapq36ozl/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_80fd1888-dc9f-11ef-bd11-0242ac1200023pv5gqg8/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpapq36ozl/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_80fd1888-dc9f-11ef-bd11-0242ac1200023pv5gqg8/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v1.0.0/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpapq36ozl/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_80fd1888-dc9f-11ef-bd11-0242ac1200023pv5gqg8/parcellation_warped.nii.gz 2025-01-27 11:12:45,930 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2025-01-27 11:12:47,347 - JUNIFER - INFO - Storing in 2025-01-27 11:12:47,518 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean 2025-01-27 11:12:47,518 - JUNIFER - INFO - Computing VBM_GM 2025-01-27 11:12:47,519 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2025-01-27 11:12:47,519 - JUNIFER - INFO - Parcellation parameters: 2025-01-27 11:12:47,519 - JUNIFER - INFO - resolution: None 2025-01-27 11:12:47,519 - JUNIFER - INFO - n_rois: 1000 2025-01-27 11:12:47,519 - JUNIFER - INFO - yeo_networks: 7 2025-01-27 11:12:47,519 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2025-01-27 11:12:48,831 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v1.0.0/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz 2025-01-27 11:12:50,763 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1) 2025-01-27 11:12:51,271 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpapq36ozl/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a4932dbe-dc9f-11ef-bd11-0242ac120002klajd0p9/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpapq36ozl/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a4932dbe-dc9f-11ef-bd11-0242ac120002klajd0p9/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v1.0.0/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpapq36ozl/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a4932dbe-dc9f-11ef-bd11-0242ac120002klajd0p9/parcellation_warped.nii.gz 2025-01-27 11:13:44,825 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2025-01-27 11:13:46,199 - JUNIFER - INFO - Storing in 2025-01-27 11:13:46,377 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std 2025-01-27 11:13:46,377 - JUNIFER - INFO - Computing VBM_GM 2025-01-27 11:13:46,377 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2025-01-27 11:13:46,377 - JUNIFER - INFO - Parcellation parameters: 2025-01-27 11:13:46,377 - JUNIFER - INFO - resolution: None 2025-01-27 11:13:46,377 - JUNIFER - INFO - n_rois: 1000 2025-01-27 11:13:46,377 - JUNIFER - INFO - yeo_networks: 7 2025-01-27 11:13:46,377 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2025-01-27 11:13:47,681 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v1.0.0/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz 2025-01-27 11:13:49,776 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1) 2025-01-27 11:13:50,282 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpapq36ozl/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_c7a6f7cc-dc9f-11ef-bd11-0242ac120002jf45ldtk/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpapq36ozl/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_c7a6f7cc-dc9f-11ef-bd11-0242ac120002jf45ldtk/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v1.0.0/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpapq36ozl/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_c7a6f7cc-dc9f-11ef-bd11-0242ac120002jf45ldtk/parcellation_warped.nii.gz 2025-01-27 11:14:43,691 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2025-01-27 11:14:45,079 - JUNIFER - INFO - Storing in 2025-01-27 11:14:45,258 - JUNIFER - INFO - Marker collection fitting done 2025-01-27 11:14:45,265 - JUNIFER - INFO - Getting element sub-10 2025-01-27 11:14:45,265 - JUNIFER - INFO - Fitting pipeline 2025-01-27 11:14:45,265 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0011_MR1/mwrc1OAS1_0011_MR1_mpr_anon_fslswapdim_bet.nii.gz 2025-01-27 11:14:45,265 - JUNIFER - INFO - VBM_GM is of type NIFTI 2025-01-27 11:14:45,266 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80 2025-01-27 11:14:45,266 - JUNIFER - INFO - Computing VBM_GM 2025-01-27 11:14:45,266 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2025-01-27 11:14:45,266 - JUNIFER - INFO - Parcellation parameters: 2025-01-27 11:14:45,266 - JUNIFER - INFO - resolution: None 2025-01-27 11:14:45,266 - JUNIFER - INFO - n_rois: 1000 2025-01-27 11:14:45,266 - JUNIFER - INFO - yeo_networks: 7 2025-01-27 11:14:45,266 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2025-01-27 11:14:46,751 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v1.0.0/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz 2025-01-27 11:14:48,569 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1) 2025-01-27 11:14:49,076 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp_xyy0y3w/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_eadcc78a-dc9f-11ef-bd11-0242ac120002a2ctrvqb/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp_xyy0y3w/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_eadcc78a-dc9f-11ef-bd11-0242ac120002a2ctrvqb/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v1.0.0/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmp_xyy0y3w/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_eadcc78a-dc9f-11ef-bd11-0242ac120002a2ctrvqb/parcellation_warped.nii.gz 2025-01-27 11:15:43,642 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2025-01-27 11:15:45,022 - JUNIFER - INFO - Storing in 2025-01-27 11:15:45,192 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean 2025-01-27 11:15:45,192 - JUNIFER - INFO - Computing VBM_GM 2025-01-27 11:15:45,192 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2025-01-27 11:15:45,192 - JUNIFER - INFO - Parcellation parameters: 2025-01-27 11:15:45,192 - JUNIFER - INFO - resolution: None 2025-01-27 11:15:45,192 - JUNIFER - INFO - n_rois: 1000 2025-01-27 11:15:45,192 - JUNIFER - INFO - yeo_networks: 7 2025-01-27 11:15:45,192 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2025-01-27 11:15:46,920 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v1.0.0/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz 2025-01-27 11:15:48,842 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1) 2025-01-27 11:15:49,352 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp_xyy0y3w/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_0eb9c0e0-dca0-11ef-bd11-0242ac120002hc5nxgmx/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp_xyy0y3w/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_0eb9c0e0-dca0-11ef-bd11-0242ac120002hc5nxgmx/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v1.0.0/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmp_xyy0y3w/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_0eb9c0e0-dca0-11ef-bd11-0242ac120002hc5nxgmx/parcellation_warped.nii.gz 2025-01-27 11:16:42,781 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2025-01-27 11:16:44,188 - JUNIFER - INFO - Storing in 2025-01-27 11:16:44,360 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std 2025-01-27 11:16:44,360 - JUNIFER - INFO - Computing VBM_GM 2025-01-27 11:16:44,360 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2025-01-27 11:16:44,360 - JUNIFER - INFO - Parcellation parameters: 2025-01-27 11:16:44,360 - JUNIFER - INFO - resolution: None 2025-01-27 11:16:44,360 - JUNIFER - INFO - n_rois: 1000 2025-01-27 11:16:44,360 - JUNIFER - INFO - yeo_networks: 7 2025-01-27 11:16:44,360 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2025-01-27 11:16:45,559 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v1.0.0/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz 2025-01-27 11:16:47,388 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1) 2025-01-27 11:16:47,896 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp_xyy0y3w/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_31ad300a-dca0-11ef-bd11-0242ac120002ioxrscw3/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp_xyy0y3w/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_31ad300a-dca0-11ef-bd11-0242ac120002ioxrscw3/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v1.0.0/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmp_xyy0y3w/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_31ad300a-dca0-11ef-bd11-0242ac120002ioxrscw3/parcellation_warped.nii.gz 2025-01-27 11:17:41,888 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2025-01-27 11:17:43,242 - JUNIFER - INFO - Storing in 2025-01-27 11:17:43,422 - JUNIFER - INFO - Marker collection fitting done | .. code-block:: Python import tempfile import junifer.testing.registry # noqa: F401 from junifer.api import run datagrabber = { "kind": "OasisVBMTestingDataGrabber", } markers = [ { "name": "Schaefer1000x7_TrimMean80", "kind": "ParcelAggregation", "parcellation": "Schaefer1000x7", "method": "trim_mean", "method_params": {"proportiontocut": 0.2}, }, { "name": "Schaefer1000x7_Mean", "kind": "ParcelAggregation", "parcellation": "Schaefer1000x7", "method": "mean", }, { "name": "Schaefer1000x7_Std", "kind": "ParcelAggregation", "parcellation": "Schaefer1000x7", "method": "std", }, ] storage = { "kind": "SQLiteFeatureStorage", } with tempfile.TemporaryDirectory() as tmpdir: uri = f"{tmpdir}/test.sqlite" storage["uri"] = uri run( workdir="/tmp", datagrabber=datagrabber, markers=markers, storage=storage, ) .. rst-class:: sphx-glr-timing **Total running time of the script:** (36 minutes 44.431 seconds) .. _sphx_glr_download_auto_examples_run_run_gmd_mean.py: .. only:: html .. container:: sphx-glr-footer sphx-glr-footer-example .. container:: sphx-glr-download sphx-glr-download-jupyter :download:`Download Jupyter notebook: run_run_gmd_mean.ipynb ` .. container:: sphx-glr-download sphx-glr-download-python :download:`Download Python source code: run_run_gmd_mean.py ` .. container:: sphx-glr-download sphx-glr-download-zip :download:`Download zipped: run_run_gmd_mean.zip ` .. only:: html .. rst-class:: sphx-glr-signature `Gallery generated by Sphinx-Gallery `_