.. DO NOT EDIT.
.. THIS FILE WAS AUTOMATICALLY GENERATED BY SPHINX-GALLERY.
.. TO MAKE CHANGES, EDIT THE SOURCE PYTHON FILE:
.. "auto_examples/norun_ukbvm_gmd.py"
.. LINE NUMBERS ARE GIVEN BELOW.

.. only:: html

    .. note::
        :class: sphx-glr-download-link-note

        :ref:`Go to the end <sphx_glr_download_auto_examples_norun_ukbvm_gmd.py>`
        to download the full example code.

.. rst-class:: sphx-glr-example-title

.. _sphx_glr_auto_examples_norun_ukbvm_gmd.py:


UKB VBM GMD Extraction
======================

Authors: Federico Raimondo

License: BSD 3 clause

.. GENERATED FROM PYTHON SOURCE LINES 9-44

.. code-block:: Python



    from junifer.api import run


    markers = [
        {
            "name": "Schaefer1000x7_TrimMean80",
            "kind": "ParcelAggregation",
            "parcellation": "Schaefer1000x7",
            "method": "trim_mean",
            "method_params": {"proportiontocut": 0.2},
        },
        {
            "name": "Schaefer1000x7_Mean",
            "kind": "ParcelAggregation",
            "parcellation": "Schaefer1000x7",
            "method": "mean",
        },
        {
            "name": "Schaefer1000x7_Std",
            "kind": "ParcelAggregation",
            "parcellation": "Schaefer1000x7",
            "method": "std",
        },
    ]

    run(
        workdir="/tmp",
        datagrabber="JuselessUKBVBM",
        elements=("sub-1627474", "ses-2"),
        markers=markers,
        storage="SQLDataFrameStorage",
        storage_params={"outpath": "/data/project/juniferexample"},
    )


.. _sphx_glr_download_auto_examples_norun_ukbvm_gmd.py:

.. only:: html

  .. container:: sphx-glr-footer sphx-glr-footer-example

    .. container:: sphx-glr-download sphx-glr-download-jupyter

      :download:`Download Jupyter notebook: norun_ukbvm_gmd.ipynb <norun_ukbvm_gmd.ipynb>`

    .. container:: sphx-glr-download sphx-glr-download-python

      :download:`Download Python source code: norun_ukbvm_gmd.py <norun_ukbvm_gmd.py>`


.. only:: html

 .. rst-class:: sphx-glr-signature

    `Gallery generated by Sphinx-Gallery <https://sphinx-gallery.github.io>`_