.. DO NOT EDIT. .. THIS FILE WAS AUTOMATICALLY GENERATED BY SPHINX-GALLERY. .. TO MAKE CHANGES, EDIT THE SOURCE PYTHON FILE: .. "auto_examples/run_junifer_julearn.py" .. LINE NUMBERS ARE GIVEN BELOW. .. only:: html .. note:: :class: sphx-glr-download-link-note :ref:`Go to the end ` to download the full example code. .. rst-class:: sphx-glr-example-title .. _sphx_glr_auto_examples_run_junifer_julearn.py: Run junifer and julearn. ======================== This example uses a ParcelAggregation marker to compute the mean of each parcel using the Schaefer parcellation (100 rois, 7 Yeo networks) for a 3D nifti to extract some features for machine learning using julearn to predict some other data. Authors: Leonard Sasse, Sami Hamdan, Nicolas Nieto, Synchon Mandal License: BSD 3 clause .. GENERATED FROM PYTHON SOURCE LINES 14-27 .. code-block:: Python import tempfile import nilearn import pandas as pd from julearn import run_cross_validation, PipelineCreator import junifer.testing.registry # noqa: F401 from junifer.api import collect, run from junifer.storage.sqlite import SQLiteFeatureStorage from junifer.utils import configure_logging .. GENERATED FROM PYTHON SOURCE LINES 28-29 Set the logging level to info to see extra information: .. GENERATED FROM PYTHON SOURCE LINES 29-32 .. code-block:: Python configure_logging(level="INFO") .. rst-class:: sphx-glr-script-out .. code-block:: none /__w/junifer/junifer/junifer/utils/logging.py:155: UserWarning: The '__version__' attribute is deprecated and will be removed in MarkupSafe 3.1. Use feature detection, or `importlib.metadata.version("markupsafe")`, instead. vstring = str(getattr(module, "__version__", None)) 2025-09-22 15:48:47,012 - JUNIFER - INFO - ===== Lib Versions ===== 2025-09-22 15:48:47,012 - JUNIFER - INFO - click: 8.1.8 2025-09-22 15:48:47,012 - JUNIFER - INFO - numpy: 1.26.4 2025-09-22 15:48:47,012 - JUNIFER - INFO - scipy: 1.15.0 2025-09-22 15:48:47,012 - JUNIFER - INFO - datalad: 1.1.6 2025-09-22 15:48:47,012 - JUNIFER - INFO - pandas: 2.1.4 2025-09-22 15:48:47,012 - JUNIFER - INFO - nibabel: 5.3.2 2025-09-22 15:48:47,012 - JUNIFER - INFO - nilearn: 0.10.4 2025-09-22 15:48:47,012 - JUNIFER - INFO - sqlalchemy: 2.0.43 2025-09-22 15:48:47,012 - JUNIFER - INFO - ruamel.yaml: 0.18.15 2025-09-22 15:48:47,012 - JUNIFER - INFO - tqdm: 4.66.6 2025-09-22 15:48:47,012 - JUNIFER - INFO - templateflow: 24.2.2 2025-09-22 15:48:47,012 - JUNIFER - INFO - junifer_data: None 2025-09-22 15:48:47,012 - JUNIFER - INFO - junifer: 0.0.7.dev206 2025-09-22 15:48:47,012 - JUNIFER - INFO - ======================== .. GENERATED FROM PYTHON SOURCE LINES 33-34 Define the markers you want: .. GENERATED FROM PYTHON SOURCE LINES 34-52 .. code-block:: Python marker_dicts = [ { "name": "Schaefer100x17_TrimMean80", "kind": "ParcelAggregation", "parcellation": "Schaefer100x17", "method": "trim_mean", "method_params": {"proportiontocut": 0.2}, }, { "name": "Schaefer200x17_Mean", "kind": "ParcelAggregation", "parcellation": "Schaefer200x17", "method": "mean", }, ] .. GENERATED FROM PYTHON SOURCE LINES 53-54 Define target and confounds for julearn machine learning: .. GENERATED FROM PYTHON SOURCE LINES 54-58 .. code-block:: Python y = "age" confound = "sex" .. GENERATED FROM PYTHON SOURCE LINES 59-61 Load the VBM phenotype data for machine learning data: - Fetch the Oasis dataset .. GENERATED FROM PYTHON SOURCE LINES 61-70 .. code-block:: Python oasis_dataset = nilearn.datasets.fetch_oasis_vbm() age = oasis_dataset.ext_vars[y][:10] sex = ( pd.Series(oasis_dataset.ext_vars["mf"][:10]) .map(lambda x: 1 if x == "F" else 0) .values ) .. GENERATED FROM PYTHON SOURCE LINES 71-72 Create a temporary directory for junifer feature extraction: .. GENERATED FROM PYTHON SOURCE LINES 72-92 .. code-block:: Python with tempfile.TemporaryDirectory() as tmpdir: storage = {"kind": "SQLiteFeatureStorage", "uri": f"{tmpdir}/test.sqlite"} # run the defined junifer feature extraction pipeline run( workdir="/tmp", datagrabber={"kind": "OasisVBMTestingDataGrabber"}, markers=marker_dicts, storage=storage, ) # read in extracted features and add confounds and targets # for julearn run cross validation collect(storage) db = SQLiteFeatureStorage(uri=storage["uri"]) df_vbm = db.read_df(feature_name="VBM_GM_Schaefer200x17_Mean_aggregation") oasis_subjects = [x[0] for x in df_vbm.index] df_vbm.index = oasis_subjects .. rst-class:: sphx-glr-script-out .. code-block:: none 2025-09-22 15:48:47,030 - JUNIFER - INFO - Validating Marker Collection 2025-09-22 15:48:47,031 - JUNIFER - INFO - DataGrabber output type: ['VBM_GM'] 2025-09-22 15:48:47,031 - JUNIFER - INFO - Validating Data Reader: 2025-09-22 15:48:47,031 - JUNIFER - INFO - Data Reader output type: ['VBM_GM'] 2025-09-22 15:48:47,031 - JUNIFER - INFO - Validating Marker: Schaefer100x17_TrimMean80 2025-09-22 15:48:47,031 - JUNIFER - INFO - Marker output type: ['vector'] 2025-09-22 15:48:47,031 - JUNIFER - INFO - Validating storage for Schaefer100x17_TrimMean80 2025-09-22 15:48:47,031 - JUNIFER - INFO - Validating Marker: Schaefer200x17_Mean 2025-09-22 15:48:47,031 - JUNIFER - INFO - Marker output type: ['vector'] 2025-09-22 15:48:47,031 - JUNIFER - INFO - Validating storage for Schaefer200x17_Mean 2025-09-22 15:48:47,036 - JUNIFER - INFO - Getting element sub-01 2025-09-22 15:48:47,036 - JUNIFER - INFO - Fitting pipeline 2025-09-22 15:48:47,036 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0001_MR1/mwrc1OAS1_0001_MR1_mpr_anon_fslswapdim_bet.nii.gz 2025-09-22 15:48:47,036 - JUNIFER - INFO - VBM_GM is of type NIFTI 2025-09-22 15:48:47,037 - JUNIFER - INFO - Fitting marker Schaefer100x17_TrimMean80 2025-09-22 15:48:47,037 - JUNIFER - INFO - Computing VBM_GM 2025-09-22 15:48:47,037 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2025-09-22 15:48:47,037 - JUNIFER - INFO - Parcellation parameters: 2025-09-22 15:48:47,037 - JUNIFER - INFO - resolution: None 2025-09-22 15:48:47,037 - JUNIFER - INFO - n_rois: 100 2025-09-22 15:48:47,037 - JUNIFER - INFO - yeo_networks: 17 2025-09-22 15:48:47,037 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2025-09-22 15:48:47,111 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v4/parcellations/Schaefer2018/Yeo2011/Schaefer2018_100Parcels_17Networks_order_FSLMNI152_1mm.nii.gz 2025-09-22 15:48:49,406 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1) 2025-09-22 15:48:49,909 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp2efmz2pq/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_a063fede-97cb-11f0-a4c0-5ace1b2a80e5am53qvrz/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp2efmz2pq/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_a063fede-97cb-11f0-a4c0-5ace1b2a80e5am53qvrz/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v4/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmp2efmz2pq/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_a063fede-97cb-11f0-a4c0-5ace1b2a80e5am53qvrz/parcellation_warped.nii.gz 2025-09-22 15:48:56,231 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2025-09-22 15:48:57,690 - JUNIFER - INFO - Storing in 2025-09-22 15:48:57,737 - JUNIFER - INFO - Fitting marker Schaefer200x17_Mean 2025-09-22 15:48:57,737 - JUNIFER - INFO - Computing VBM_GM 2025-09-22 15:48:57,737 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2025-09-22 15:48:57,737 - JUNIFER - INFO - Parcellation parameters: 2025-09-22 15:48:57,737 - JUNIFER - INFO - resolution: None 2025-09-22 15:48:57,737 - JUNIFER - INFO - n_rois: 200 2025-09-22 15:48:57,737 - JUNIFER - INFO - yeo_networks: 17 2025-09-22 15:48:57,737 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2025-09-22 15:48:57,812 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v4/parcellations/Schaefer2018/Yeo2011/Schaefer2018_200Parcels_17Networks_order_FSLMNI152_1mm.nii.gz 2025-09-22 15:49:00,133 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1) 2025-09-22 15:49:00,639 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp2efmz2pq/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_a6c59c92-97cb-11f0-a4c0-5ace1b2a80e5tcpbrwyk/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp2efmz2pq/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_a6c59c92-97cb-11f0-a4c0-5ace1b2a80e5tcpbrwyk/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v4/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmp2efmz2pq/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_a6c59c92-97cb-11f0-a4c0-5ace1b2a80e5tcpbrwyk/parcellation_warped.nii.gz 2025-09-22 15:49:12,053 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2025-09-22 15:49:13,524 - JUNIFER - INFO - Storing in 2025-09-22 15:49:13,576 - JUNIFER - INFO - Marker collection fitting done 2025-09-22 15:49:13,582 - JUNIFER - INFO - Getting element sub-02 2025-09-22 15:49:13,582 - JUNIFER - INFO - Fitting pipeline 2025-09-22 15:49:13,582 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0002_MR1/mwrc1OAS1_0002_MR1_mpr_anon_fslswapdim_bet.nii.gz 2025-09-22 15:49:13,582 - JUNIFER - INFO - VBM_GM is of type NIFTI 2025-09-22 15:49:13,583 - JUNIFER - INFO - Fitting marker Schaefer100x17_TrimMean80 2025-09-22 15:49:13,583 - JUNIFER - INFO - Computing VBM_GM 2025-09-22 15:49:13,584 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2025-09-22 15:49:13,584 - JUNIFER - INFO - Parcellation parameters: 2025-09-22 15:49:13,584 - JUNIFER - INFO - resolution: None 2025-09-22 15:49:13,584 - JUNIFER - INFO - n_rois: 100 2025-09-22 15:49:13,584 - JUNIFER - INFO - yeo_networks: 17 2025-09-22 15:49:13,584 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2025-09-22 15:49:13,660 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v4/parcellations/Schaefer2018/Yeo2011/Schaefer2018_100Parcels_17Networks_order_FSLMNI152_1mm.nii.gz 2025-09-22 15:49:15,949 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1) 2025-09-22 15:49:16,454 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmplldpqsn8/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_b037a2c0-97cb-11f0-a4c0-5ace1b2a80e5canif7uh/prewarp_parcellation.nii.gz -r /tmp/junifer/tmplldpqsn8/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_b037a2c0-97cb-11f0-a4c0-5ace1b2a80e5canif7uh/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v4/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmplldpqsn8/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_b037a2c0-97cb-11f0-a4c0-5ace1b2a80e5canif7uh/parcellation_warped.nii.gz 2025-09-22 15:49:22,753 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2025-09-22 15:49:24,148 - JUNIFER - INFO - Storing in 2025-09-22 15:49:24,182 - JUNIFER - INFO - Fitting marker Schaefer200x17_Mean 2025-09-22 15:49:24,182 - JUNIFER - INFO - Computing VBM_GM 2025-09-22 15:49:24,182 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2025-09-22 15:49:24,182 - JUNIFER - INFO - Parcellation parameters: 2025-09-22 15:49:24,182 - JUNIFER - INFO - resolution: None 2025-09-22 15:49:24,182 - JUNIFER - INFO - n_rois: 200 2025-09-22 15:49:24,182 - JUNIFER - INFO - yeo_networks: 17 2025-09-22 15:49:24,182 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2025-09-22 15:49:24,256 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v4/parcellations/Schaefer2018/Yeo2011/Schaefer2018_200Parcels_17Networks_order_FSLMNI152_1mm.nii.gz 2025-09-22 15:49:26,539 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1) 2025-09-22 15:49:27,045 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmplldpqsn8/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_b688511a-97cb-11f0-a4c0-5ace1b2a80e5pqcgqnfu/prewarp_parcellation.nii.gz -r /tmp/junifer/tmplldpqsn8/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_b688511a-97cb-11f0-a4c0-5ace1b2a80e5pqcgqnfu/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v4/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmplldpqsn8/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_b688511a-97cb-11f0-a4c0-5ace1b2a80e5pqcgqnfu/parcellation_warped.nii.gz 2025-09-22 15:49:38,352 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2025-09-22 15:49:39,762 - JUNIFER - INFO - Storing in 2025-09-22 15:49:39,814 - JUNIFER - INFO - Marker collection fitting done 2025-09-22 15:49:39,820 - JUNIFER - INFO - Getting element sub-03 2025-09-22 15:49:39,820 - JUNIFER - INFO - Fitting pipeline 2025-09-22 15:49:39,820 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0003_MR1/mwrc1OAS1_0003_MR1_mpr_anon_fslswapdim_bet.nii.gz 2025-09-22 15:49:39,820 - JUNIFER - INFO - VBM_GM is of type NIFTI 2025-09-22 15:49:39,821 - JUNIFER - INFO - Fitting marker Schaefer100x17_TrimMean80 2025-09-22 15:49:39,821 - JUNIFER - INFO - Computing VBM_GM 2025-09-22 15:49:39,821 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2025-09-22 15:49:39,821 - JUNIFER - INFO - Parcellation parameters: 2025-09-22 15:49:39,821 - JUNIFER - INFO - resolution: None 2025-09-22 15:49:39,821 - JUNIFER - INFO - n_rois: 100 2025-09-22 15:49:39,821 - JUNIFER - INFO - yeo_networks: 17 2025-09-22 15:49:39,821 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2025-09-22 15:49:39,896 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v4/parcellations/Schaefer2018/Yeo2011/Schaefer2018_100Parcels_17Networks_order_FSLMNI152_1mm.nii.gz 2025-09-22 15:49:42,180 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1) 2025-09-22 15:49:42,684 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp86dmjyqn/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_bfda90b6-97cb-11f0-a4c0-5ace1b2a80e57tjz1d_h/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp86dmjyqn/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_bfda90b6-97cb-11f0-a4c0-5ace1b2a80e57tjz1d_h/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v4/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmp86dmjyqn/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_bfda90b6-97cb-11f0-a4c0-5ace1b2a80e57tjz1d_h/parcellation_warped.nii.gz 2025-09-22 15:49:49,009 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2025-09-22 15:49:50,437 - JUNIFER - INFO - Storing in 2025-09-22 15:49:50,470 - JUNIFER - INFO - Fitting marker Schaefer200x17_Mean 2025-09-22 15:49:50,471 - JUNIFER - INFO - Computing VBM_GM 2025-09-22 15:49:50,471 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2025-09-22 15:49:50,471 - JUNIFER - INFO - Parcellation parameters: 2025-09-22 15:49:50,471 - JUNIFER - INFO - resolution: None 2025-09-22 15:49:50,471 - JUNIFER - INFO - n_rois: 200 2025-09-22 15:49:50,471 - JUNIFER - INFO - yeo_networks: 17 2025-09-22 15:49:50,471 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2025-09-22 15:49:50,546 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v4/parcellations/Schaefer2018/Yeo2011/Schaefer2018_200Parcels_17Networks_order_FSLMNI152_1mm.nii.gz 2025-09-22 15:49:52,841 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1) 2025-09-22 15:49:53,347 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp86dmjyqn/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_c6346806-97cb-11f0-a4c0-5ace1b2a80e5q_6bqt2x/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp86dmjyqn/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_c6346806-97cb-11f0-a4c0-5ace1b2a80e5q_6bqt2x/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v4/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmp86dmjyqn/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_c6346806-97cb-11f0-a4c0-5ace1b2a80e5q_6bqt2x/parcellation_warped.nii.gz 2025-09-22 15:50:04,764 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2025-09-22 15:50:06,172 - JUNIFER - INFO - Storing in 2025-09-22 15:50:06,224 - JUNIFER - INFO - Marker collection fitting done 2025-09-22 15:50:06,230 - JUNIFER - INFO - Getting element sub-04 2025-09-22 15:50:06,230 - JUNIFER - INFO - Fitting pipeline 2025-09-22 15:50:06,230 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0004_MR1/mwrc1OAS1_0004_MR1_mpr_anon_fslswapdim_bet.nii.gz 2025-09-22 15:50:06,230 - JUNIFER - INFO - VBM_GM is of type NIFTI 2025-09-22 15:50:06,231 - JUNIFER - INFO - Fitting marker Schaefer100x17_TrimMean80 2025-09-22 15:50:06,231 - JUNIFER - INFO - Computing VBM_GM 2025-09-22 15:50:06,231 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2025-09-22 15:50:06,231 - JUNIFER - INFO - Parcellation parameters: 2025-09-22 15:50:06,231 - JUNIFER - INFO - resolution: None 2025-09-22 15:50:06,231 - JUNIFER - INFO - n_rois: 100 2025-09-22 15:50:06,231 - JUNIFER - INFO - yeo_networks: 17 2025-09-22 15:50:06,231 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2025-09-22 15:50:06,306 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v4/parcellations/Schaefer2018/Yeo2011/Schaefer2018_100Parcels_17Networks_order_FSLMNI152_1mm.nii.gz 2025-09-22 15:50:08,616 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1) 2025-09-22 15:50:09,121 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmphpsl17sq/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_cf9886fc-97cb-11f0-a4c0-5ace1b2a80e50e9q45n5/prewarp_parcellation.nii.gz -r /tmp/junifer/tmphpsl17sq/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_cf9886fc-97cb-11f0-a4c0-5ace1b2a80e50e9q45n5/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v4/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmphpsl17sq/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_cf9886fc-97cb-11f0-a4c0-5ace1b2a80e50e9q45n5/parcellation_warped.nii.gz 2025-09-22 15:50:15,434 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2025-09-22 15:50:16,814 - JUNIFER - INFO - Storing in 2025-09-22 15:50:16,847 - JUNIFER - INFO - Fitting marker Schaefer200x17_Mean 2025-09-22 15:50:16,847 - JUNIFER - INFO - Computing VBM_GM 2025-09-22 15:50:16,847 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2025-09-22 15:50:16,847 - JUNIFER - INFO - Parcellation parameters: 2025-09-22 15:50:16,847 - JUNIFER - INFO - resolution: None 2025-09-22 15:50:16,847 - JUNIFER - INFO - n_rois: 200 2025-09-22 15:50:16,847 - JUNIFER - INFO - yeo_networks: 17 2025-09-22 15:50:16,847 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2025-09-22 15:50:16,921 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v4/parcellations/Schaefer2018/Yeo2011/Schaefer2018_200Parcels_17Networks_order_FSLMNI152_1mm.nii.gz 2025-09-22 15:50:19,223 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1) 2025-09-22 15:50:19,730 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmphpsl17sq/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_d5eccacc-97cb-11f0-a4c0-5ace1b2a80e5xo_38e5m/prewarp_parcellation.nii.gz -r /tmp/junifer/tmphpsl17sq/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_d5eccacc-97cb-11f0-a4c0-5ace1b2a80e5xo_38e5m/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v4/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmphpsl17sq/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_d5eccacc-97cb-11f0-a4c0-5ace1b2a80e5xo_38e5m/parcellation_warped.nii.gz 2025-09-22 15:50:31,012 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2025-09-22 15:50:32,406 - JUNIFER - INFO - Storing in 2025-09-22 15:50:32,458 - JUNIFER - INFO - Marker collection fitting done 2025-09-22 15:50:32,464 - JUNIFER - INFO - Getting element sub-05 2025-09-22 15:50:32,464 - JUNIFER - INFO - Fitting pipeline 2025-09-22 15:50:32,464 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0005_MR1/mwrc1OAS1_0005_MR1_mpr_anon_fslswapdim_bet.nii.gz 2025-09-22 15:50:32,464 - JUNIFER - INFO - VBM_GM is of type NIFTI 2025-09-22 15:50:32,465 - JUNIFER - INFO - Fitting marker Schaefer100x17_TrimMean80 2025-09-22 15:50:32,465 - JUNIFER - INFO - Computing VBM_GM 2025-09-22 15:50:32,465 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2025-09-22 15:50:32,465 - JUNIFER - INFO - Parcellation parameters: 2025-09-22 15:50:32,465 - JUNIFER - INFO - resolution: None 2025-09-22 15:50:32,465 - JUNIFER - INFO - n_rois: 100 2025-09-22 15:50:32,465 - JUNIFER - INFO - yeo_networks: 17 2025-09-22 15:50:32,465 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2025-09-22 15:50:32,539 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v4/parcellations/Schaefer2018/Yeo2011/Schaefer2018_100Parcels_17Networks_order_FSLMNI152_1mm.nii.gz 2025-09-22 15:50:34,838 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1) 2025-09-22 15:50:35,343 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpmc4xrly1/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_df3b362c-97cb-11f0-a4c0-5ace1b2a80e5ncz6j8am/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpmc4xrly1/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_df3b362c-97cb-11f0-a4c0-5ace1b2a80e5ncz6j8am/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v4/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpmc4xrly1/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_df3b362c-97cb-11f0-a4c0-5ace1b2a80e5ncz6j8am/parcellation_warped.nii.gz 2025-09-22 15:50:41,671 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2025-09-22 15:50:43,143 - JUNIFER - INFO - Storing in 2025-09-22 15:50:43,177 - JUNIFER - INFO - Fitting marker Schaefer200x17_Mean 2025-09-22 15:50:43,178 - JUNIFER - INFO - Computing VBM_GM 2025-09-22 15:50:43,178 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2025-09-22 15:50:43,178 - JUNIFER - INFO - Parcellation parameters: 2025-09-22 15:50:43,178 - JUNIFER - INFO - resolution: None 2025-09-22 15:50:43,178 - JUNIFER - INFO - n_rois: 200 2025-09-22 15:50:43,178 - JUNIFER - INFO - yeo_networks: 17 2025-09-22 15:50:43,178 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2025-09-22 15:50:43,252 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v4/parcellations/Schaefer2018/Yeo2011/Schaefer2018_200Parcels_17Networks_order_FSLMNI152_1mm.nii.gz 2025-09-22 15:50:45,599 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1) 2025-09-22 15:50:46,106 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpmc4xrly1/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_e59f1b14-97cb-11f0-a4c0-5ace1b2a80e5iu41z4_f/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpmc4xrly1/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_e59f1b14-97cb-11f0-a4c0-5ace1b2a80e5iu41z4_f/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v4/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpmc4xrly1/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_e59f1b14-97cb-11f0-a4c0-5ace1b2a80e5iu41z4_f/parcellation_warped.nii.gz 2025-09-22 15:50:57,404 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2025-09-22 15:50:58,859 - JUNIFER - INFO - Storing in 2025-09-22 15:50:58,911 - JUNIFER - INFO - Marker collection fitting done 2025-09-22 15:50:58,917 - JUNIFER - INFO - Getting element sub-06 2025-09-22 15:50:58,917 - JUNIFER - INFO - Fitting pipeline 2025-09-22 15:50:58,917 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0006_MR1/mwrc1OAS1_0006_MR1_mpr_anon_fslswapdim_bet.nii.gz 2025-09-22 15:50:58,917 - JUNIFER - INFO - VBM_GM is of type NIFTI 2025-09-22 15:50:58,918 - JUNIFER - INFO - Fitting marker Schaefer100x17_TrimMean80 2025-09-22 15:50:58,918 - JUNIFER - INFO - Computing VBM_GM 2025-09-22 15:50:58,918 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2025-09-22 15:50:58,918 - JUNIFER - INFO - Parcellation parameters: 2025-09-22 15:50:58,918 - JUNIFER - INFO - resolution: None 2025-09-22 15:50:58,918 - JUNIFER - INFO - n_rois: 100 2025-09-22 15:50:58,918 - JUNIFER - INFO - yeo_networks: 17 2025-09-22 15:50:58,918 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2025-09-22 15:50:58,992 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v4/parcellations/Schaefer2018/Yeo2011/Schaefer2018_100Parcels_17Networks_order_FSLMNI152_1mm.nii.gz 2025-09-22 15:51:01,291 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1) 2025-09-22 15:51:01,795 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpizp7t84w/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_eefff5f2-97cb-11f0-a4c0-5ace1b2a80e53r4b1txy/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpizp7t84w/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_eefff5f2-97cb-11f0-a4c0-5ace1b2a80e53r4b1txy/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v4/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpizp7t84w/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_eefff5f2-97cb-11f0-a4c0-5ace1b2a80e53r4b1txy/parcellation_warped.nii.gz 2025-09-22 15:51:08,083 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2025-09-22 15:51:09,500 - JUNIFER - INFO - Storing in 2025-09-22 15:51:09,534 - JUNIFER - INFO - Fitting marker Schaefer200x17_Mean 2025-09-22 15:51:09,534 - JUNIFER - INFO - Computing VBM_GM 2025-09-22 15:51:09,534 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2025-09-22 15:51:09,534 - JUNIFER - INFO - Parcellation parameters: 2025-09-22 15:51:09,534 - JUNIFER - INFO - resolution: None 2025-09-22 15:51:09,534 - JUNIFER - INFO - n_rois: 200 2025-09-22 15:51:09,534 - JUNIFER - INFO - yeo_networks: 17 2025-09-22 15:51:09,534 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2025-09-22 15:51:09,608 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v4/parcellations/Schaefer2018/Yeo2011/Schaefer2018_200Parcels_17Networks_order_FSLMNI152_1mm.nii.gz 2025-09-22 15:51:11,915 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1) 2025-09-22 15:51:12,421 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpizp7t84w/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_f5540b1e-97cb-11f0-a4c0-5ace1b2a80e5oy5ykcpa/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpizp7t84w/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_f5540b1e-97cb-11f0-a4c0-5ace1b2a80e5oy5ykcpa/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v4/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpizp7t84w/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_f5540b1e-97cb-11f0-a4c0-5ace1b2a80e5oy5ykcpa/parcellation_warped.nii.gz 2025-09-22 15:51:23,766 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2025-09-22 15:51:25,174 - JUNIFER - INFO - Storing in 2025-09-22 15:51:25,226 - JUNIFER - INFO - Marker collection fitting done 2025-09-22 15:51:25,231 - JUNIFER - INFO - Getting element sub-07 2025-09-22 15:51:25,231 - JUNIFER - INFO - Fitting pipeline 2025-09-22 15:51:25,231 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0007_MR1/mwrc1OAS1_0007_MR1_mpr_anon_fslswapdim_bet.nii.gz 2025-09-22 15:51:25,231 - JUNIFER - INFO - VBM_GM is of type NIFTI 2025-09-22 15:51:25,232 - JUNIFER - INFO - Fitting marker Schaefer100x17_TrimMean80 2025-09-22 15:51:25,232 - JUNIFER - INFO - Computing VBM_GM 2025-09-22 15:51:25,233 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2025-09-22 15:51:25,233 - JUNIFER - INFO - Parcellation parameters: 2025-09-22 15:51:25,233 - JUNIFER - INFO - resolution: None 2025-09-22 15:51:25,233 - JUNIFER - INFO - n_rois: 100 2025-09-22 15:51:25,233 - JUNIFER - INFO - yeo_networks: 17 2025-09-22 15:51:25,233 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2025-09-22 15:51:25,307 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v4/parcellations/Schaefer2018/Yeo2011/Schaefer2018_100Parcels_17Networks_order_FSLMNI152_1mm.nii.gz 2025-09-22 15:51:27,601 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1) 2025-09-22 15:51:28,120 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp7yf653l2/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_feaf0aba-97cb-11f0-a4c0-5ace1b2a80e50r92w8rs/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp7yf653l2/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_feaf0aba-97cb-11f0-a4c0-5ace1b2a80e50r92w8rs/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v4/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmp7yf653l2/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_feaf0aba-97cb-11f0-a4c0-5ace1b2a80e50r92w8rs/parcellation_warped.nii.gz 2025-09-22 15:51:34,412 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2025-09-22 15:51:35,786 - JUNIFER - INFO - Storing in 2025-09-22 15:51:35,820 - JUNIFER - INFO - Fitting marker Schaefer200x17_Mean 2025-09-22 15:51:35,820 - JUNIFER - INFO - Computing VBM_GM 2025-09-22 15:51:35,820 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2025-09-22 15:51:35,820 - JUNIFER - INFO - Parcellation parameters: 2025-09-22 15:51:35,820 - JUNIFER - INFO - resolution: None 2025-09-22 15:51:35,820 - JUNIFER - INFO - n_rois: 200 2025-09-22 15:51:35,820 - JUNIFER - INFO - yeo_networks: 17 2025-09-22 15:51:35,820 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2025-09-22 15:51:35,895 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v4/parcellations/Schaefer2018/Yeo2011/Schaefer2018_200Parcels_17Networks_order_FSLMNI152_1mm.nii.gz 2025-09-22 15:51:38,188 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1) 2025-09-22 15:51:38,695 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp7yf653l2/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_04ff19c8-97cc-11f0-a4c0-5ace1b2a80e5yy8131kd/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp7yf653l2/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_04ff19c8-97cc-11f0-a4c0-5ace1b2a80e5yy8131kd/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v4/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmp7yf653l2/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_04ff19c8-97cc-11f0-a4c0-5ace1b2a80e5yy8131kd/parcellation_warped.nii.gz 2025-09-22 15:51:50,004 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2025-09-22 15:51:51,394 - JUNIFER - INFO - Storing in 2025-09-22 15:51:51,445 - JUNIFER - INFO - Marker collection fitting done 2025-09-22 15:51:51,451 - JUNIFER - INFO - Getting element sub-08 2025-09-22 15:51:51,451 - JUNIFER - INFO - Fitting pipeline 2025-09-22 15:51:51,451 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0009_MR1/mwrc1OAS1_0009_MR1_mpr_anon_fslswapdim_bet.nii.gz 2025-09-22 15:51:51,451 - JUNIFER - INFO - VBM_GM is of type NIFTI 2025-09-22 15:51:51,452 - JUNIFER - INFO - Fitting marker Schaefer100x17_TrimMean80 2025-09-22 15:51:51,452 - JUNIFER - INFO - Computing VBM_GM 2025-09-22 15:51:51,452 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2025-09-22 15:51:51,452 - JUNIFER - INFO - Parcellation parameters: 2025-09-22 15:51:51,452 - JUNIFER - INFO - resolution: None 2025-09-22 15:51:51,452 - JUNIFER - INFO - n_rois: 100 2025-09-22 15:51:51,452 - JUNIFER - INFO - yeo_networks: 17 2025-09-22 15:51:51,452 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2025-09-22 15:51:51,526 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v4/parcellations/Schaefer2018/Yeo2011/Schaefer2018_100Parcels_17Networks_order_FSLMNI152_1mm.nii.gz 2025-09-22 15:51:53,824 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1) 2025-09-22 15:51:54,329 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpb5dpeo90/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_0e4fb8ac-97cc-11f0-a4c0-5ace1b2a80e59y0uhqse/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpb5dpeo90/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_0e4fb8ac-97cc-11f0-a4c0-5ace1b2a80e59y0uhqse/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v4/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpb5dpeo90/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_0e4fb8ac-97cc-11f0-a4c0-5ace1b2a80e59y0uhqse/parcellation_warped.nii.gz 2025-09-22 15:52:00,657 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2025-09-22 15:52:02,050 - JUNIFER - INFO - Storing in 2025-09-22 15:52:02,084 - JUNIFER - INFO - Fitting marker Schaefer200x17_Mean 2025-09-22 15:52:02,084 - JUNIFER - INFO - Computing VBM_GM 2025-09-22 15:52:02,084 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2025-09-22 15:52:02,084 - JUNIFER - INFO - Parcellation parameters: 2025-09-22 15:52:02,084 - JUNIFER - INFO - resolution: None 2025-09-22 15:52:02,084 - JUNIFER - INFO - n_rois: 200 2025-09-22 15:52:02,084 - JUNIFER - INFO - yeo_networks: 17 2025-09-22 15:52:02,084 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2025-09-22 15:52:02,159 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v4/parcellations/Schaefer2018/Yeo2011/Schaefer2018_200Parcels_17Networks_order_FSLMNI152_1mm.nii.gz 2025-09-22 15:52:04,446 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1) 2025-09-22 15:52:04,950 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpb5dpeo90/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_14a68910-97cc-11f0-a4c0-5ace1b2a80e5bspyurl4/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpb5dpeo90/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_14a68910-97cc-11f0-a4c0-5ace1b2a80e5bspyurl4/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v4/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpb5dpeo90/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_14a68910-97cc-11f0-a4c0-5ace1b2a80e5bspyurl4/parcellation_warped.nii.gz 2025-09-22 15:52:16,375 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2025-09-22 15:52:17,769 - JUNIFER - INFO - Storing in 2025-09-22 15:52:17,823 - JUNIFER - INFO - Marker collection fitting done 2025-09-22 15:52:17,828 - JUNIFER - INFO - Getting element sub-09 2025-09-22 15:52:17,828 - JUNIFER - INFO - Fitting pipeline 2025-09-22 15:52:17,828 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0010_MR1/mwrc1OAS1_0010_MR1_mpr_anon_fslswapdim_bet.nii.gz 2025-09-22 15:52:17,829 - JUNIFER - INFO - VBM_GM is of type NIFTI 2025-09-22 15:52:17,829 - JUNIFER - INFO - Fitting marker Schaefer100x17_TrimMean80 2025-09-22 15:52:17,830 - JUNIFER - INFO - Computing VBM_GM 2025-09-22 15:52:17,830 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2025-09-22 15:52:17,830 - JUNIFER - INFO - Parcellation parameters: 2025-09-22 15:52:17,830 - JUNIFER - INFO - resolution: None 2025-09-22 15:52:17,830 - JUNIFER - INFO - n_rois: 100 2025-09-22 15:52:17,830 - JUNIFER - INFO - yeo_networks: 17 2025-09-22 15:52:17,830 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2025-09-22 15:52:17,904 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v4/parcellations/Schaefer2018/Yeo2011/Schaefer2018_100Parcels_17Networks_order_FSLMNI152_1mm.nii.gz 2025-09-22 15:52:20,195 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1) 2025-09-22 15:52:20,699 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpwgvsere9/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_1e08b280-97cc-11f0-a4c0-5ace1b2a80e5grairilc/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpwgvsere9/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_1e08b280-97cc-11f0-a4c0-5ace1b2a80e5grairilc/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v4/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpwgvsere9/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_1e08b280-97cc-11f0-a4c0-5ace1b2a80e5grairilc/parcellation_warped.nii.gz 2025-09-22 15:52:27,054 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2025-09-22 15:52:28,521 - JUNIFER - INFO - Storing in 2025-09-22 15:52:28,554 - JUNIFER - INFO - Fitting marker Schaefer200x17_Mean 2025-09-22 15:52:28,554 - JUNIFER - INFO - Computing VBM_GM 2025-09-22 15:52:28,554 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2025-09-22 15:52:28,554 - JUNIFER - INFO - Parcellation parameters: 2025-09-22 15:52:28,554 - JUNIFER - INFO - resolution: None 2025-09-22 15:52:28,554 - JUNIFER - INFO - n_rois: 200 2025-09-22 15:52:28,554 - JUNIFER - INFO - yeo_networks: 17 2025-09-22 15:52:28,554 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2025-09-22 15:52:28,630 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v4/parcellations/Schaefer2018/Yeo2011/Schaefer2018_200Parcels_17Networks_order_FSLMNI152_1mm.nii.gz 2025-09-22 15:52:30,936 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1) 2025-09-22 15:52:31,439 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpwgvsere9/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_246da694-97cc-11f0-a4c0-5ace1b2a80e5ejv4p399/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpwgvsere9/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_246da694-97cc-11f0-a4c0-5ace1b2a80e5ejv4p399/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v4/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpwgvsere9/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_246da694-97cc-11f0-a4c0-5ace1b2a80e5ejv4p399/parcellation_warped.nii.gz 2025-09-22 15:52:42,760 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2025-09-22 15:52:44,225 - JUNIFER - INFO - Storing in 2025-09-22 15:52:44,277 - JUNIFER - INFO - Marker collection fitting done 2025-09-22 15:52:44,283 - JUNIFER - INFO - Getting element sub-10 2025-09-22 15:52:44,283 - JUNIFER - INFO - Fitting pipeline 2025-09-22 15:52:44,283 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0011_MR1/mwrc1OAS1_0011_MR1_mpr_anon_fslswapdim_bet.nii.gz 2025-09-22 15:52:44,283 - JUNIFER - INFO - VBM_GM is of type NIFTI 2025-09-22 15:52:44,284 - JUNIFER - INFO - Fitting marker Schaefer100x17_TrimMean80 2025-09-22 15:52:44,284 - JUNIFER - INFO - Computing VBM_GM 2025-09-22 15:52:44,284 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2025-09-22 15:52:44,284 - JUNIFER - INFO - Parcellation parameters: 2025-09-22 15:52:44,284 - JUNIFER - INFO - resolution: None 2025-09-22 15:52:44,284 - JUNIFER - INFO - n_rois: 100 2025-09-22 15:52:44,284 - JUNIFER - INFO - yeo_networks: 17 2025-09-22 15:52:44,284 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2025-09-22 15:52:44,358 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v4/parcellations/Schaefer2018/Yeo2011/Schaefer2018_100Parcels_17Networks_order_FSLMNI152_1mm.nii.gz 2025-09-22 15:52:46,674 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1) 2025-09-22 15:52:47,188 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmput2h1_4f/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_2dcd3fa6-97cc-11f0-a4c0-5ace1b2a80e5flx24zwn/prewarp_parcellation.nii.gz -r /tmp/junifer/tmput2h1_4f/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_2dcd3fa6-97cc-11f0-a4c0-5ace1b2a80e5flx24zwn/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v4/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmput2h1_4f/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_2dcd3fa6-97cc-11f0-a4c0-5ace1b2a80e5flx24zwn/parcellation_warped.nii.gz 2025-09-22 15:52:53,487 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2025-09-22 15:52:54,884 - JUNIFER - INFO - Storing in 2025-09-22 15:52:54,919 - JUNIFER - INFO - Fitting marker Schaefer200x17_Mean 2025-09-22 15:52:54,919 - JUNIFER - INFO - Computing VBM_GM 2025-09-22 15:52:54,919 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2025-09-22 15:52:54,919 - JUNIFER - INFO - Parcellation parameters: 2025-09-22 15:52:54,919 - JUNIFER - INFO - resolution: None 2025-09-22 15:52:54,919 - JUNIFER - INFO - n_rois: 200 2025-09-22 15:52:54,919 - JUNIFER - INFO - yeo_networks: 17 2025-09-22 15:52:54,919 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2025-09-22 15:52:54,993 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v4/parcellations/Schaefer2018/Yeo2011/Schaefer2018_200Parcels_17Networks_order_FSLMNI152_1mm.nii.gz 2025-09-22 15:52:57,308 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1) 2025-09-22 15:52:57,813 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmput2h1_4f/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_3424978c-97cc-11f0-a4c0-5ace1b2a80e541qvcaa1/prewarp_parcellation.nii.gz -r /tmp/junifer/tmput2h1_4f/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_3424978c-97cc-11f0-a4c0-5ace1b2a80e541qvcaa1/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v4/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmput2h1_4f/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_3424978c-97cc-11f0-a4c0-5ace1b2a80e541qvcaa1/parcellation_warped.nii.gz 2025-09-22 15:53:09,186 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2025-09-22 15:53:10,631 - JUNIFER - INFO - Storing in 2025-09-22 15:53:10,683 - JUNIFER - INFO - Marker collection fitting done 2025-09-22 15:53:10,688 - JUNIFER - INFO - Collecting data using SQLiteFeatureStorage 2025-09-22 15:53:10,689 - JUNIFER - INFO - Collecting data from /tmp/tmp1aumxghc/*test.sqlite file: 0it [00:00, ?it/s] feature: 0%| | 0/2 [00:00` .. container:: sphx-glr-download sphx-glr-download-python :download:`Download Python source code: run_junifer_julearn.py ` .. container:: sphx-glr-download sphx-glr-download-zip :download:`Download zipped: run_junifer_julearn.zip ` .. only:: html .. rst-class:: sphx-glr-signature `Gallery generated by Sphinx-Gallery `_