8.3. UKB VBM GMD Extraction

Authors: Federico Raimondo

License: BSD 3 clause

2025-09-24 13:17:27,755 - JUNIFER - INFO - Registering OasisVBMTestingDataGrabber in datagrabber
2025-09-24 13:17:27,755 - JUNIFER - INFO - Registering SPMAuditoryTestingDataGrabber in datagrabber
2025-09-24 13:17:27,755 - JUNIFER - INFO - Registering PartlyCloudyTestingDataGrabber in datagrabber
2025-09-24 13:17:27,762 - JUNIFER - INFO - Registering ParcelAggregation in marker
2025-09-24 13:17:27,770 - JUNIFER - INFO - Registering SQLiteFeatureStorage in storage
2025-09-24 13:17:27,770 - JUNIFER - INFO - Validating Marker Collection
2025-09-24 13:17:27,770 - JUNIFER - INFO - DataGrabber output type: ['VBM_GM']
2025-09-24 13:17:27,770 - JUNIFER - INFO - Validating Data Reader:
2025-09-24 13:17:27,771 - JUNIFER - INFO - Data Reader output type: ['VBM_GM']
2025-09-24 13:17:27,771 - JUNIFER - INFO - Validating Marker: Schaefer1000x7_TrimMean80
2025-09-24 13:17:27,771 - JUNIFER - INFO - Marker output type: ['vector']
2025-09-24 13:17:27,771 - JUNIFER - INFO - Validating storage for Schaefer1000x7_TrimMean80
2025-09-24 13:17:27,771 - JUNIFER - INFO - Validating Marker: Schaefer1000x7_Mean
2025-09-24 13:17:27,771 - JUNIFER - INFO - Marker output type: ['vector']
2025-09-24 13:17:27,771 - JUNIFER - INFO - Validating storage for Schaefer1000x7_Mean
2025-09-24 13:17:27,771 - JUNIFER - INFO - Validating Marker: Schaefer1000x7_Std
2025-09-24 13:17:27,771 - JUNIFER - INFO - Marker output type: ['vector']
2025-09-24 13:17:27,771 - JUNIFER - INFO - Validating storage for Schaefer1000x7_Std

Added README.md to /github/home/nilearn_data


Dataset created in /github/home/nilearn_data/oasis1

Downloading data from https://www.nitrc.org/frs/download.php/6364/archive_dartel.tgz ...

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Extracting data from /github/home/nilearn_data/oasis1/7088b0bf88f5650db26e32ec3afdd589/archive_dartel.tgz..... done.
2025-09-24 13:18:17,200 - JUNIFER - INFO - Getting element sub-01
2025-09-24 13:18:17,200 - JUNIFER - INFO - Fitting pipeline
2025-09-24 13:18:17,200 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0001_MR1/mwrc1OAS1_0001_MR1_mpr_anon_fslswapdim_bet.nii.gz
2025-09-24 13:18:17,200 - JUNIFER - INFO - VBM_GM is of type NIFTI
2025-09-24 13:18:17,201 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2025-09-24 13:18:17,201 - JUNIFER - INFO - Computing VBM_GM
2025-09-24 13:18:17,202 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-09-24 13:18:17,202 - JUNIFER - INFO - Parcellation parameters:
2025-09-24 13:18:17,202 - JUNIFER - INFO -      resolution: None
2025-09-24 13:18:17,202 - JUNIFER - INFO -      n_rois: 1000
2025-09-24 13:18:17,202 - JUNIFER - INFO -      yeo_networks: 7
2025-09-24 13:18:17,202 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-09-24 13:18:18,958 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v4/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-09-24 13:18:21,431 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
Downloading https://templateflow.s3.amazonaws.com/tpl-MNI152Lin/tpl-MNI152Lin_res-01_T1w.nii.gz

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2025-09-24 13:18:22,409 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpk0wvje3l/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_f0084534-9948-11f0-83de-7258d444b19669lzv7l8/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpk0wvje3l/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_f0084534-9948-11f0-83de-7258d444b19669lzv7l8/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v4/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpk0wvje3l/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_f0084534-9948-11f0-83de-7258d444b19669lzv7l8/parcellation_warped.nii.gz
2025-09-24 13:19:17,071 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-09-24 13:19:18,832 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpbr26n9ya/test.sqlite (multiple output)>
2025-09-24 13:19:19,014 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2025-09-24 13:19:19,014 - JUNIFER - INFO - Computing VBM_GM
2025-09-24 13:19:19,014 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-09-24 13:19:19,014 - JUNIFER - INFO - Parcellation parameters:
2025-09-24 13:19:19,014 - JUNIFER - INFO -      resolution: None
2025-09-24 13:19:19,014 - JUNIFER - INFO -      n_rois: 1000
2025-09-24 13:19:19,014 - JUNIFER - INFO -      yeo_networks: 7
2025-09-24 13:19:19,014 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-09-24 13:19:19,092 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v4/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-09-24 13:19:21,643 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-09-24 13:19:22,161 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpk0wvje3l/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_13deeb98-9949-11f0-83de-7258d444b196st2ly80f/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpk0wvje3l/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_13deeb98-9949-11f0-83de-7258d444b196st2ly80f/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v4/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpk0wvje3l/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_13deeb98-9949-11f0-83de-7258d444b196st2ly80f/parcellation_warped.nii.gz
2025-09-24 13:20:17,949 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-09-24 13:20:19,670 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpbr26n9ya/test.sqlite (multiple output)>
2025-09-24 13:20:19,866 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2025-09-24 13:20:19,867 - JUNIFER - INFO - Computing VBM_GM
2025-09-24 13:20:19,867 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-09-24 13:20:19,867 - JUNIFER - INFO - Parcellation parameters:
2025-09-24 13:20:19,867 - JUNIFER - INFO -      resolution: None
2025-09-24 13:20:19,867 - JUNIFER - INFO -      n_rois: 1000
2025-09-24 13:20:19,867 - JUNIFER - INFO -      yeo_networks: 7
2025-09-24 13:20:19,867 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-09-24 13:20:19,949 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v4/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-09-24 13:20:22,510 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-09-24 13:20:23,027 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpk0wvje3l/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_3824cebe-9949-11f0-83de-7258d444b196ech_xn21/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpk0wvje3l/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_3824cebe-9949-11f0-83de-7258d444b196ech_xn21/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v4/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpk0wvje3l/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_3824cebe-9949-11f0-83de-7258d444b196ech_xn21/parcellation_warped.nii.gz
2025-09-24 13:21:17,571 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-09-24 13:21:19,391 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpbr26n9ya/test.sqlite (multiple output)>
2025-09-24 13:21:19,585 - JUNIFER - INFO - Marker collection fitting done
2025-09-24 13:21:19,593 - JUNIFER - INFO - Getting element sub-02
2025-09-24 13:21:19,594 - JUNIFER - INFO - Fitting pipeline
2025-09-24 13:21:19,594 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0002_MR1/mwrc1OAS1_0002_MR1_mpr_anon_fslswapdim_bet.nii.gz
2025-09-24 13:21:19,594 - JUNIFER - INFO - VBM_GM is of type NIFTI
2025-09-24 13:21:19,595 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2025-09-24 13:21:19,595 - JUNIFER - INFO - Computing VBM_GM
2025-09-24 13:21:19,595 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-09-24 13:21:19,595 - JUNIFER - INFO - Parcellation parameters:
2025-09-24 13:21:19,595 - JUNIFER - INFO -      resolution: None
2025-09-24 13:21:19,595 - JUNIFER - INFO -      n_rois: 1000
2025-09-24 13:21:19,595 - JUNIFER - INFO -      yeo_networks: 7
2025-09-24 13:21:19,595 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-09-24 13:21:19,677 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v4/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-09-24 13:21:22,248 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-09-24 13:21:22,768 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpre4vk06w/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_5bbebcfe-9949-11f0-83de-7258d444b196rdhkwdn2/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpre4vk06w/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_5bbebcfe-9949-11f0-83de-7258d444b196rdhkwdn2/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v4/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpre4vk06w/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_5bbebcfe-9949-11f0-83de-7258d444b196rdhkwdn2/parcellation_warped.nii.gz
2025-09-24 13:22:16,771 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-09-24 13:22:18,467 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpbr26n9ya/test.sqlite (multiple output)>
2025-09-24 13:22:18,649 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2025-09-24 13:22:18,649 - JUNIFER - INFO - Computing VBM_GM
2025-09-24 13:22:18,649 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-09-24 13:22:18,649 - JUNIFER - INFO - Parcellation parameters:
2025-09-24 13:22:18,649 - JUNIFER - INFO -      resolution: None
2025-09-24 13:22:18,649 - JUNIFER - INFO -      n_rois: 1000
2025-09-24 13:22:18,649 - JUNIFER - INFO -      yeo_networks: 7
2025-09-24 13:22:18,649 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-09-24 13:22:18,728 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v4/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-09-24 13:22:21,302 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-09-24 13:22:21,817 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpre4vk06w/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_7ef100e2-9949-11f0-83de-7258d444b196ilrgg4uz/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpre4vk06w/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_7ef100e2-9949-11f0-83de-7258d444b196ilrgg4uz/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v4/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpre4vk06w/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_7ef100e2-9949-11f0-83de-7258d444b196ilrgg4uz/parcellation_warped.nii.gz
2025-09-24 13:23:16,235 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-09-24 13:23:18,008 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpbr26n9ya/test.sqlite (multiple output)>
2025-09-24 13:23:18,197 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2025-09-24 13:23:18,197 - JUNIFER - INFO - Computing VBM_GM
2025-09-24 13:23:18,198 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-09-24 13:23:18,198 - JUNIFER - INFO - Parcellation parameters:
2025-09-24 13:23:18,198 - JUNIFER - INFO -      resolution: None
2025-09-24 13:23:18,198 - JUNIFER - INFO -      n_rois: 1000
2025-09-24 13:23:18,198 - JUNIFER - INFO -      yeo_networks: 7
2025-09-24 13:23:18,198 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-09-24 13:23:18,277 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v4/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-09-24 13:23:20,848 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-09-24 13:23:21,363 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpre4vk06w/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a26fa3ac-9949-11f0-83de-7258d444b196t0y4q20z/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpre4vk06w/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a26fa3ac-9949-11f0-83de-7258d444b196t0y4q20z/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v4/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpre4vk06w/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a26fa3ac-9949-11f0-83de-7258d444b196t0y4q20z/parcellation_warped.nii.gz
2025-09-24 13:24:15,579 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-09-24 13:24:17,277 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpbr26n9ya/test.sqlite (multiple output)>
2025-09-24 13:24:17,466 - JUNIFER - INFO - Marker collection fitting done
2025-09-24 13:24:17,474 - JUNIFER - INFO - Getting element sub-03
2025-09-24 13:24:17,474 - JUNIFER - INFO - Fitting pipeline
2025-09-24 13:24:17,474 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0003_MR1/mwrc1OAS1_0003_MR1_mpr_anon_fslswapdim_bet.nii.gz
2025-09-24 13:24:17,474 - JUNIFER - INFO - VBM_GM is of type NIFTI
2025-09-24 13:24:17,475 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2025-09-24 13:24:17,475 - JUNIFER - INFO - Computing VBM_GM
2025-09-24 13:24:17,476 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-09-24 13:24:17,476 - JUNIFER - INFO - Parcellation parameters:
2025-09-24 13:24:17,476 - JUNIFER - INFO -      resolution: None
2025-09-24 13:24:17,476 - JUNIFER - INFO -      n_rois: 1000
2025-09-24 13:24:17,476 - JUNIFER - INFO -      yeo_networks: 7
2025-09-24 13:24:17,476 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-09-24 13:24:17,554 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v4/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-09-24 13:24:20,098 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-09-24 13:24:20,610 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp5qv5aw27/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_c5c47a1c-9949-11f0-83de-7258d444b196j5qy2h_2/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp5qv5aw27/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_c5c47a1c-9949-11f0-83de-7258d444b196j5qy2h_2/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v4/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmp5qv5aw27/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_c5c47a1c-9949-11f0-83de-7258d444b196j5qy2h_2/parcellation_warped.nii.gz
2025-09-24 13:25:14,501 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-09-24 13:25:16,182 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpbr26n9ya/test.sqlite (multiple output)>
2025-09-24 13:25:16,361 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2025-09-24 13:25:16,361 - JUNIFER - INFO - Computing VBM_GM
2025-09-24 13:25:16,361 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-09-24 13:25:16,361 - JUNIFER - INFO - Parcellation parameters:
2025-09-24 13:25:16,361 - JUNIFER - INFO -      resolution: None
2025-09-24 13:25:16,361 - JUNIFER - INFO -      n_rois: 1000
2025-09-24 13:25:16,361 - JUNIFER - INFO -      yeo_networks: 7
2025-09-24 13:25:16,361 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-09-24 13:25:16,438 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v4/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-09-24 13:25:19,000 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-09-24 13:25:19,515 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp5qv5aw27/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_e8dd3ed0-9949-11f0-83de-7258d444b196dxhe03l6/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp5qv5aw27/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_e8dd3ed0-9949-11f0-83de-7258d444b196dxhe03l6/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v4/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmp5qv5aw27/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_e8dd3ed0-9949-11f0-83de-7258d444b196dxhe03l6/parcellation_warped.nii.gz
2025-09-24 13:26:13,965 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-09-24 13:26:15,676 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpbr26n9ya/test.sqlite (multiple output)>
2025-09-24 13:26:15,863 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2025-09-24 13:26:15,863 - JUNIFER - INFO - Computing VBM_GM
2025-09-24 13:26:15,863 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-09-24 13:26:15,863 - JUNIFER - INFO - Parcellation parameters:
2025-09-24 13:26:15,863 - JUNIFER - INFO -      resolution: None
2025-09-24 13:26:15,863 - JUNIFER - INFO -      n_rois: 1000
2025-09-24 13:26:15,864 - JUNIFER - INFO -      yeo_networks: 7
2025-09-24 13:26:15,864 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-09-24 13:26:15,941 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v4/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-09-24 13:26:18,452 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-09-24 13:26:18,964 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp5qv5aw27/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_0c5462bc-994a-11f0-83de-7258d444b196h99lk3cz/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp5qv5aw27/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_0c5462bc-994a-11f0-83de-7258d444b196h99lk3cz/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v4/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmp5qv5aw27/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_0c5462bc-994a-11f0-83de-7258d444b196h99lk3cz/parcellation_warped.nii.gz
2025-09-24 13:27:13,888 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-09-24 13:27:15,613 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpbr26n9ya/test.sqlite (multiple output)>
2025-09-24 13:27:15,801 - JUNIFER - INFO - Marker collection fitting done
2025-09-24 13:27:15,809 - JUNIFER - INFO - Getting element sub-04
2025-09-24 13:27:15,809 - JUNIFER - INFO - Fitting pipeline
2025-09-24 13:27:15,809 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0004_MR1/mwrc1OAS1_0004_MR1_mpr_anon_fslswapdim_bet.nii.gz
2025-09-24 13:27:15,809 - JUNIFER - INFO - VBM_GM is of type NIFTI
2025-09-24 13:27:15,810 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2025-09-24 13:27:15,810 - JUNIFER - INFO - Computing VBM_GM
2025-09-24 13:27:15,811 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-09-24 13:27:15,811 - JUNIFER - INFO - Parcellation parameters:
2025-09-24 13:27:15,811 - JUNIFER - INFO -      resolution: None
2025-09-24 13:27:15,811 - JUNIFER - INFO -      n_rois: 1000
2025-09-24 13:27:15,811 - JUNIFER - INFO -      yeo_networks: 7
2025-09-24 13:27:15,811 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-09-24 13:27:15,888 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v4/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-09-24 13:27:18,437 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-09-24 13:27:18,950 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp571os5_6/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_300ff2fc-994a-11f0-83de-7258d444b196qsqw04yy/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp571os5_6/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_300ff2fc-994a-11f0-83de-7258d444b196qsqw04yy/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v4/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmp571os5_6/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_300ff2fc-994a-11f0-83de-7258d444b196qsqw04yy/parcellation_warped.nii.gz
2025-09-24 13:28:13,772 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-09-24 13:28:15,531 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpbr26n9ya/test.sqlite (multiple output)>
2025-09-24 13:28:15,717 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2025-09-24 13:28:15,717 - JUNIFER - INFO - Computing VBM_GM
2025-09-24 13:28:15,717 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-09-24 13:28:15,717 - JUNIFER - INFO - Parcellation parameters:
2025-09-24 13:28:15,717 - JUNIFER - INFO -      resolution: None
2025-09-24 13:28:15,717 - JUNIFER - INFO -      n_rois: 1000
2025-09-24 13:28:15,717 - JUNIFER - INFO -      yeo_networks: 7
2025-09-24 13:28:15,717 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-09-24 13:28:15,796 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v4/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-09-24 13:28:18,340 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-09-24 13:28:18,854 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp571os5_6/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_53c58a0e-994a-11f0-83de-7258d444b196emtgiitg/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp571os5_6/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_53c58a0e-994a-11f0-83de-7258d444b196emtgiitg/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v4/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmp571os5_6/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_53c58a0e-994a-11f0-83de-7258d444b196emtgiitg/parcellation_warped.nii.gz
2025-09-24 13:29:13,172 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-09-24 13:29:14,837 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpbr26n9ya/test.sqlite (multiple output)>
2025-09-24 13:29:15,021 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2025-09-24 13:29:15,021 - JUNIFER - INFO - Computing VBM_GM
2025-09-24 13:29:15,021 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-09-24 13:29:15,022 - JUNIFER - INFO - Parcellation parameters:
2025-09-24 13:29:15,022 - JUNIFER - INFO -      resolution: None
2025-09-24 13:29:15,022 - JUNIFER - INFO -      n_rois: 1000
2025-09-24 13:29:15,022 - JUNIFER - INFO -      yeo_networks: 7
2025-09-24 13:29:15,022 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-09-24 13:29:15,099 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v4/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-09-24 13:29:17,625 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-09-24 13:29:18,139 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp571os5_6/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_771db38c-994a-11f0-83de-7258d444b196k08k18jq/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp571os5_6/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_771db38c-994a-11f0-83de-7258d444b196k08k18jq/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v4/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmp571os5_6/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_771db38c-994a-11f0-83de-7258d444b196k08k18jq/parcellation_warped.nii.gz
2025-09-24 13:30:11,892 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-09-24 13:30:13,670 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpbr26n9ya/test.sqlite (multiple output)>
2025-09-24 13:30:13,856 - JUNIFER - INFO - Marker collection fitting done
2025-09-24 13:30:13,865 - JUNIFER - INFO - Getting element sub-05
2025-09-24 13:30:13,865 - JUNIFER - INFO - Fitting pipeline
2025-09-24 13:30:13,865 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0005_MR1/mwrc1OAS1_0005_MR1_mpr_anon_fslswapdim_bet.nii.gz
2025-09-24 13:30:13,865 - JUNIFER - INFO - VBM_GM is of type NIFTI
2025-09-24 13:30:13,866 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2025-09-24 13:30:13,866 - JUNIFER - INFO - Computing VBM_GM
2025-09-24 13:30:13,866 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-09-24 13:30:13,866 - JUNIFER - INFO - Parcellation parameters:
2025-09-24 13:30:13,866 - JUNIFER - INFO -      resolution: None
2025-09-24 13:30:13,866 - JUNIFER - INFO -      n_rois: 1000
2025-09-24 13:30:13,866 - JUNIFER - INFO -      yeo_networks: 7
2025-09-24 13:30:13,866 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-09-24 13:30:13,946 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v4/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-09-24 13:30:16,483 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-09-24 13:30:16,996 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpkseamc7p/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_9a313b8c-994a-11f0-83de-7258d444b196ya4drdxd/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpkseamc7p/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_9a313b8c-994a-11f0-83de-7258d444b196ya4drdxd/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v4/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpkseamc7p/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_9a313b8c-994a-11f0-83de-7258d444b196ya4drdxd/parcellation_warped.nii.gz
2025-09-24 13:31:10,088 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-09-24 13:31:11,845 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpbr26n9ya/test.sqlite (multiple output)>
2025-09-24 13:31:12,021 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2025-09-24 13:31:12,022 - JUNIFER - INFO - Computing VBM_GM
2025-09-24 13:31:12,022 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-09-24 13:31:12,022 - JUNIFER - INFO - Parcellation parameters:
2025-09-24 13:31:12,022 - JUNIFER - INFO -      resolution: None
2025-09-24 13:31:12,022 - JUNIFER - INFO -      n_rois: 1000
2025-09-24 13:31:12,022 - JUNIFER - INFO -      yeo_networks: 7
2025-09-24 13:31:12,022 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-09-24 13:31:12,100 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v4/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-09-24 13:31:14,671 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-09-24 13:31:15,189 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpkseamc7p/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_bcdaf4fc-994a-11f0-83de-7258d444b196ag5akv7_/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpkseamc7p/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_bcdaf4fc-994a-11f0-83de-7258d444b196ag5akv7_/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v4/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpkseamc7p/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_bcdaf4fc-994a-11f0-83de-7258d444b196ag5akv7_/parcellation_warped.nii.gz
2025-09-24 13:32:09,269 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-09-24 13:32:10,897 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpbr26n9ya/test.sqlite (multiple output)>
2025-09-24 13:32:11,082 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2025-09-24 13:32:11,082 - JUNIFER - INFO - Computing VBM_GM
2025-09-24 13:32:11,082 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-09-24 13:32:11,082 - JUNIFER - INFO - Parcellation parameters:
2025-09-24 13:32:11,082 - JUNIFER - INFO -      resolution: None
2025-09-24 13:32:11,082 - JUNIFER - INFO -      n_rois: 1000
2025-09-24 13:32:11,082 - JUNIFER - INFO -      yeo_networks: 7
2025-09-24 13:32:11,082 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-09-24 13:32:11,160 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v4/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-09-24 13:32:13,704 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-09-24 13:32:14,220 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpkseamc7p/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_e00eb95e-994a-11f0-83de-7258d444b196n1depenu/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpkseamc7p/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_e00eb95e-994a-11f0-83de-7258d444b196n1depenu/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v4/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpkseamc7p/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_e00eb95e-994a-11f0-83de-7258d444b196n1depenu/parcellation_warped.nii.gz
2025-09-24 13:33:08,207 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-09-24 13:33:09,990 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpbr26n9ya/test.sqlite (multiple output)>
2025-09-24 13:33:10,183 - JUNIFER - INFO - Marker collection fitting done
2025-09-24 13:33:10,190 - JUNIFER - INFO - Getting element sub-06
2025-09-24 13:33:10,191 - JUNIFER - INFO - Fitting pipeline
2025-09-24 13:33:10,191 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0006_MR1/mwrc1OAS1_0006_MR1_mpr_anon_fslswapdim_bet.nii.gz
2025-09-24 13:33:10,191 - JUNIFER - INFO - VBM_GM is of type NIFTI
2025-09-24 13:33:10,192 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2025-09-24 13:33:10,192 - JUNIFER - INFO - Computing VBM_GM
2025-09-24 13:33:10,192 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-09-24 13:33:10,192 - JUNIFER - INFO - Parcellation parameters:
2025-09-24 13:33:10,192 - JUNIFER - INFO -      resolution: None
2025-09-24 13:33:10,192 - JUNIFER - INFO -      n_rois: 1000
2025-09-24 13:33:10,192 - JUNIFER - INFO -      yeo_networks: 7
2025-09-24 13:33:10,192 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-09-24 13:33:10,271 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v4/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-09-24 13:33:12,857 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-09-24 13:33:13,374 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpkocv78gb/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_034aa5e0-994b-11f0-83de-7258d444b196t7a0uemq/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpkocv78gb/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_034aa5e0-994b-11f0-83de-7258d444b196t7a0uemq/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v4/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpkocv78gb/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_034aa5e0-994b-11f0-83de-7258d444b196t7a0uemq/parcellation_warped.nii.gz
2025-09-24 13:34:08,858 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-09-24 13:34:10,580 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpbr26n9ya/test.sqlite (multiple output)>
2025-09-24 13:34:10,759 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2025-09-24 13:34:10,759 - JUNIFER - INFO - Computing VBM_GM
2025-09-24 13:34:10,759 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-09-24 13:34:10,759 - JUNIFER - INFO - Parcellation parameters:
2025-09-24 13:34:10,759 - JUNIFER - INFO -      resolution: None
2025-09-24 13:34:10,759 - JUNIFER - INFO -      n_rois: 1000
2025-09-24 13:34:10,759 - JUNIFER - INFO -      yeo_networks: 7
2025-09-24 13:34:10,759 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-09-24 13:34:10,839 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v4/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-09-24 13:34:13,399 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-09-24 13:34:13,914 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpkocv78gb/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_276460e2-994b-11f0-83de-7258d444b196mkis66oy/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpkocv78gb/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_276460e2-994b-11f0-83de-7258d444b196mkis66oy/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v4/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpkocv78gb/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_276460e2-994b-11f0-83de-7258d444b196mkis66oy/parcellation_warped.nii.gz
2025-09-24 13:35:08,375 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-09-24 13:35:10,100 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpbr26n9ya/test.sqlite (multiple output)>
2025-09-24 13:35:10,285 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2025-09-24 13:35:10,285 - JUNIFER - INFO - Computing VBM_GM
2025-09-24 13:35:10,285 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-09-24 13:35:10,285 - JUNIFER - INFO - Parcellation parameters:
2025-09-24 13:35:10,285 - JUNIFER - INFO -      resolution: None
2025-09-24 13:35:10,285 - JUNIFER - INFO -      n_rois: 1000
2025-09-24 13:35:10,285 - JUNIFER - INFO -      yeo_networks: 7
2025-09-24 13:35:10,285 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-09-24 13:35:10,364 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v4/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-09-24 13:35:12,924 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-09-24 13:35:13,440 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpkocv78gb/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_4adf645e-994b-11f0-83de-7258d444b196s59ajqmm/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpkocv78gb/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_4adf645e-994b-11f0-83de-7258d444b196s59ajqmm/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v4/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpkocv78gb/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_4adf645e-994b-11f0-83de-7258d444b196s59ajqmm/parcellation_warped.nii.gz
2025-09-24 13:36:08,065 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-09-24 13:36:09,792 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpbr26n9ya/test.sqlite (multiple output)>
2025-09-24 13:36:09,982 - JUNIFER - INFO - Marker collection fitting done
2025-09-24 13:36:09,990 - JUNIFER - INFO - Getting element sub-07
2025-09-24 13:36:09,990 - JUNIFER - INFO - Fitting pipeline
2025-09-24 13:36:09,990 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0007_MR1/mwrc1OAS1_0007_MR1_mpr_anon_fslswapdim_bet.nii.gz
2025-09-24 13:36:09,990 - JUNIFER - INFO - VBM_GM is of type NIFTI
2025-09-24 13:36:09,991 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2025-09-24 13:36:09,991 - JUNIFER - INFO - Computing VBM_GM
2025-09-24 13:36:09,991 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-09-24 13:36:09,991 - JUNIFER - INFO - Parcellation parameters:
2025-09-24 13:36:09,992 - JUNIFER - INFO -      resolution: None
2025-09-24 13:36:09,992 - JUNIFER - INFO -      n_rois: 1000
2025-09-24 13:36:09,992 - JUNIFER - INFO -      yeo_networks: 7
2025-09-24 13:36:09,992 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-09-24 13:36:10,069 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v4/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-09-24 13:36:12,641 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-09-24 13:36:13,156 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpo25xbkm7/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_6e752548-994b-11f0-83de-7258d444b196s33xctqx/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpo25xbkm7/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_6e752548-994b-11f0-83de-7258d444b196s33xctqx/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v4/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpo25xbkm7/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_6e752548-994b-11f0-83de-7258d444b196s33xctqx/parcellation_warped.nii.gz
2025-09-24 13:37:08,072 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-09-24 13:37:09,798 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpbr26n9ya/test.sqlite (multiple output)>
2025-09-24 13:37:09,982 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2025-09-24 13:37:09,982 - JUNIFER - INFO - Computing VBM_GM
2025-09-24 13:37:09,982 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-09-24 13:37:09,982 - JUNIFER - INFO - Parcellation parameters:
2025-09-24 13:37:09,982 - JUNIFER - INFO -      resolution: None
2025-09-24 13:37:09,982 - JUNIFER - INFO -      n_rois: 1000
2025-09-24 13:37:09,982 - JUNIFER - INFO -      yeo_networks: 7
2025-09-24 13:37:09,982 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-09-24 13:37:10,061 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v4/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-09-24 13:37:12,617 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-09-24 13:37:13,133 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpo25xbkm7/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_9237c06c-994b-11f0-83de-7258d444b196ypsiwply/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpo25xbkm7/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_9237c06c-994b-11f0-83de-7258d444b196ypsiwply/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v4/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpo25xbkm7/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_9237c06c-994b-11f0-83de-7258d444b196ypsiwply/parcellation_warped.nii.gz
2025-09-24 13:38:07,157 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-09-24 13:38:08,856 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpbr26n9ya/test.sqlite (multiple output)>
2025-09-24 13:38:09,041 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2025-09-24 13:38:09,041 - JUNIFER - INFO - Computing VBM_GM
2025-09-24 13:38:09,041 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-09-24 13:38:09,041 - JUNIFER - INFO - Parcellation parameters:
2025-09-24 13:38:09,041 - JUNIFER - INFO -      resolution: None
2025-09-24 13:38:09,041 - JUNIFER - INFO -      n_rois: 1000
2025-09-24 13:38:09,041 - JUNIFER - INFO -      yeo_networks: 7
2025-09-24 13:38:09,041 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-09-24 13:38:09,119 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v4/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-09-24 13:38:11,705 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-09-24 13:38:12,221 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpo25xbkm7/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_b56bc092-994b-11f0-83de-7258d444b196770xlduj/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpo25xbkm7/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_b56bc092-994b-11f0-83de-7258d444b196770xlduj/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v4/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpo25xbkm7/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_b56bc092-994b-11f0-83de-7258d444b196770xlduj/parcellation_warped.nii.gz
2025-09-24 13:39:06,657 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-09-24 13:39:08,405 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpbr26n9ya/test.sqlite (multiple output)>
2025-09-24 13:39:08,592 - JUNIFER - INFO - Marker collection fitting done
2025-09-24 13:39:08,600 - JUNIFER - INFO - Getting element sub-08
2025-09-24 13:39:08,600 - JUNIFER - INFO - Fitting pipeline
2025-09-24 13:39:08,600 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0009_MR1/mwrc1OAS1_0009_MR1_mpr_anon_fslswapdim_bet.nii.gz
2025-09-24 13:39:08,600 - JUNIFER - INFO - VBM_GM is of type NIFTI
2025-09-24 13:39:08,601 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2025-09-24 13:39:08,601 - JUNIFER - INFO - Computing VBM_GM
2025-09-24 13:39:08,601 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-09-24 13:39:08,601 - JUNIFER - INFO - Parcellation parameters:
2025-09-24 13:39:08,601 - JUNIFER - INFO -      resolution: None
2025-09-24 13:39:08,601 - JUNIFER - INFO -      n_rois: 1000
2025-09-24 13:39:08,601 - JUNIFER - INFO -      yeo_networks: 7
2025-09-24 13:39:08,602 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-09-24 13:39:08,679 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v4/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-09-24 13:39:11,268 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-09-24 13:39:11,786 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpqdnpzlm5/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_d8eb1af4-994b-11f0-83de-7258d444b196fb22yfca/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpqdnpzlm5/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_d8eb1af4-994b-11f0-83de-7258d444b196fb22yfca/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v4/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpqdnpzlm5/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_d8eb1af4-994b-11f0-83de-7258d444b196fb22yfca/parcellation_warped.nii.gz
2025-09-24 13:40:04,826 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-09-24 13:40:06,526 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpbr26n9ya/test.sqlite (multiple output)>
2025-09-24 13:40:06,702 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2025-09-24 13:40:06,702 - JUNIFER - INFO - Computing VBM_GM
2025-09-24 13:40:06,703 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-09-24 13:40:06,703 - JUNIFER - INFO - Parcellation parameters:
2025-09-24 13:40:06,703 - JUNIFER - INFO -      resolution: None
2025-09-24 13:40:06,703 - JUNIFER - INFO -      n_rois: 1000
2025-09-24 13:40:06,703 - JUNIFER - INFO -      yeo_networks: 7
2025-09-24 13:40:06,703 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-09-24 13:40:06,779 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v4/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-09-24 13:40:09,322 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-09-24 13:40:09,836 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpqdnpzlm5/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_fb8c7012-994b-11f0-83de-7258d444b1962r6tk8w8/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpqdnpzlm5/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_fb8c7012-994b-11f0-83de-7258d444b1962r6tk8w8/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v4/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpqdnpzlm5/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_fb8c7012-994b-11f0-83de-7258d444b1962r6tk8w8/parcellation_warped.nii.gz
2025-09-24 13:41:03,629 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-09-24 13:41:05,296 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpbr26n9ya/test.sqlite (multiple output)>
2025-09-24 13:41:05,482 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2025-09-24 13:41:05,482 - JUNIFER - INFO - Computing VBM_GM
2025-09-24 13:41:05,482 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-09-24 13:41:05,483 - JUNIFER - INFO - Parcellation parameters:
2025-09-24 13:41:05,483 - JUNIFER - INFO -      resolution: None
2025-09-24 13:41:05,483 - JUNIFER - INFO -      n_rois: 1000
2025-09-24 13:41:05,483 - JUNIFER - INFO -      yeo_networks: 7
2025-09-24 13:41:05,483 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-09-24 13:41:05,560 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v4/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-09-24 13:41:08,132 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-09-24 13:41:08,648 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpqdnpzlm5/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_1e958742-994c-11f0-83de-7258d444b196x8d4o99h/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpqdnpzlm5/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_1e958742-994c-11f0-83de-7258d444b196x8d4o99h/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v4/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpqdnpzlm5/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_1e958742-994c-11f0-83de-7258d444b196x8d4o99h/parcellation_warped.nii.gz
2025-09-24 13:42:03,440 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-09-24 13:42:05,225 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpbr26n9ya/test.sqlite (multiple output)>
2025-09-24 13:42:05,416 - JUNIFER - INFO - Marker collection fitting done
2025-09-24 13:42:05,424 - JUNIFER - INFO - Getting element sub-09
2025-09-24 13:42:05,424 - JUNIFER - INFO - Fitting pipeline
2025-09-24 13:42:05,424 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0010_MR1/mwrc1OAS1_0010_MR1_mpr_anon_fslswapdim_bet.nii.gz
2025-09-24 13:42:05,424 - JUNIFER - INFO - VBM_GM is of type NIFTI
2025-09-24 13:42:05,425 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2025-09-24 13:42:05,425 - JUNIFER - INFO - Computing VBM_GM
2025-09-24 13:42:05,425 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-09-24 13:42:05,425 - JUNIFER - INFO - Parcellation parameters:
2025-09-24 13:42:05,426 - JUNIFER - INFO -      resolution: None
2025-09-24 13:42:05,426 - JUNIFER - INFO -      n_rois: 1000
2025-09-24 13:42:05,426 - JUNIFER - INFO -      yeo_networks: 7
2025-09-24 13:42:05,426 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-09-24 13:42:05,503 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v4/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-09-24 13:42:08,070 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-09-24 13:42:08,584 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpqym5h55u/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_425024b2-994c-11f0-83de-7258d444b196tc5ud6zu/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpqym5h55u/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_425024b2-994c-11f0-83de-7258d444b196tc5ud6zu/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v4/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpqym5h55u/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_425024b2-994c-11f0-83de-7258d444b196tc5ud6zu/parcellation_warped.nii.gz
2025-09-24 13:43:03,170 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-09-24 13:43:04,986 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpbr26n9ya/test.sqlite (multiple output)>
2025-09-24 13:43:05,167 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2025-09-24 13:43:05,167 - JUNIFER - INFO - Computing VBM_GM
2025-09-24 13:43:05,167 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-09-24 13:43:05,167 - JUNIFER - INFO - Parcellation parameters:
2025-09-24 13:43:05,167 - JUNIFER - INFO -      resolution: None
2025-09-24 13:43:05,167 - JUNIFER - INFO -      n_rois: 1000
2025-09-24 13:43:05,167 - JUNIFER - INFO -      yeo_networks: 7
2025-09-24 13:43:05,167 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-09-24 13:43:05,245 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v4/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-09-24 13:43:07,798 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-09-24 13:43:08,313 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpqym5h55u/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_65ec0440-994c-11f0-83de-7258d444b1965dx9tvpq/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpqym5h55u/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_65ec0440-994c-11f0-83de-7258d444b1965dx9tvpq/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v4/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpqym5h55u/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_65ec0440-994c-11f0-83de-7258d444b1965dx9tvpq/parcellation_warped.nii.gz
2025-09-24 13:44:03,505 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-09-24 13:44:05,405 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpbr26n9ya/test.sqlite (multiple output)>
2025-09-24 13:44:05,597 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2025-09-24 13:44:05,597 - JUNIFER - INFO - Computing VBM_GM
2025-09-24 13:44:05,598 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-09-24 13:44:05,598 - JUNIFER - INFO - Parcellation parameters:
2025-09-24 13:44:05,598 - JUNIFER - INFO -      resolution: None
2025-09-24 13:44:05,598 - JUNIFER - INFO -      n_rois: 1000
2025-09-24 13:44:05,598 - JUNIFER - INFO -      yeo_networks: 7
2025-09-24 13:44:05,598 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-09-24 13:44:05,677 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v4/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-09-24 13:44:08,291 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-09-24 13:44:08,811 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpqym5h55u/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_89f1e076-994c-11f0-83de-7258d444b196_o4wnohe/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpqym5h55u/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_89f1e076-994c-11f0-83de-7258d444b196_o4wnohe/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v4/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpqym5h55u/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_89f1e076-994c-11f0-83de-7258d444b196_o4wnohe/parcellation_warped.nii.gz
2025-09-24 13:45:02,875 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-09-24 13:45:04,626 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpbr26n9ya/test.sqlite (multiple output)>
2025-09-24 13:45:04,815 - JUNIFER - INFO - Marker collection fitting done
2025-09-24 13:45:04,823 - JUNIFER - INFO - Getting element sub-10
2025-09-24 13:45:04,823 - JUNIFER - INFO - Fitting pipeline
2025-09-24 13:45:04,824 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0011_MR1/mwrc1OAS1_0011_MR1_mpr_anon_fslswapdim_bet.nii.gz
2025-09-24 13:45:04,824 - JUNIFER - INFO - VBM_GM is of type NIFTI
2025-09-24 13:45:04,825 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2025-09-24 13:45:04,825 - JUNIFER - INFO - Computing VBM_GM
2025-09-24 13:45:04,825 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-09-24 13:45:04,825 - JUNIFER - INFO - Parcellation parameters:
2025-09-24 13:45:04,825 - JUNIFER - INFO -      resolution: None
2025-09-24 13:45:04,825 - JUNIFER - INFO -      n_rois: 1000
2025-09-24 13:45:04,825 - JUNIFER - INFO -      yeo_networks: 7
2025-09-24 13:45:04,825 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-09-24 13:45:04,903 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v4/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-09-24 13:45:07,490 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-09-24 13:45:08,010 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpfla9q2hn/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_ad3e18ec-994c-11f0-83de-7258d444b196ds4os2i3/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpfla9q2hn/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_ad3e18ec-994c-11f0-83de-7258d444b196ds4os2i3/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v4/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpfla9q2hn/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_ad3e18ec-994c-11f0-83de-7258d444b196ds4os2i3/parcellation_warped.nii.gz
2025-09-24 13:46:02,879 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-09-24 13:46:04,647 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpbr26n9ya/test.sqlite (multiple output)>
2025-09-24 13:46:04,826 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2025-09-24 13:46:04,826 - JUNIFER - INFO - Computing VBM_GM
2025-09-24 13:46:04,826 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-09-24 13:46:04,826 - JUNIFER - INFO - Parcellation parameters:
2025-09-24 13:46:04,826 - JUNIFER - INFO -      resolution: None
2025-09-24 13:46:04,826 - JUNIFER - INFO -      n_rois: 1000
2025-09-24 13:46:04,826 - JUNIFER - INFO -      yeo_networks: 7
2025-09-24 13:46:04,826 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-09-24 13:46:04,904 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v4/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-09-24 13:46:07,490 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-09-24 13:46:08,004 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpfla9q2hn/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_d101f7da-994c-11f0-83de-7258d444b196lz72qpm_/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpfla9q2hn/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_d101f7da-994c-11f0-83de-7258d444b196lz72qpm_/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v4/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpfla9q2hn/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_d101f7da-994c-11f0-83de-7258d444b196lz72qpm_/parcellation_warped.nii.gz
2025-09-24 13:47:02,133 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-09-24 13:47:03,903 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpbr26n9ya/test.sqlite (multiple output)>
2025-09-24 13:47:04,086 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2025-09-24 13:47:04,086 - JUNIFER - INFO - Computing VBM_GM
2025-09-24 13:47:04,086 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-09-24 13:47:04,086 - JUNIFER - INFO - Parcellation parameters:
2025-09-24 13:47:04,086 - JUNIFER - INFO -      resolution: None
2025-09-24 13:47:04,086 - JUNIFER - INFO -      n_rois: 1000
2025-09-24 13:47:04,086 - JUNIFER - INFO -      yeo_networks: 7
2025-09-24 13:47:04,086 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-09-24 13:47:04,164 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v4/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-09-24 13:47:06,711 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-09-24 13:47:07,224 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpfla9q2hn/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_f4545b2e-994c-11f0-83de-7258d444b196vnpfhjvd/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpfla9q2hn/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_f4545b2e-994c-11f0-83de-7258d444b196vnpfhjvd/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v4/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpfla9q2hn/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_f4545b2e-994c-11f0-83de-7258d444b196vnpfhjvd/parcellation_warped.nii.gz
2025-09-24 13:48:01,380 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-09-24 13:48:03,084 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpbr26n9ya/test.sqlite (multiple output)>
2025-09-24 13:48:03,269 - JUNIFER - INFO - Marker collection fitting done

import tempfile

import junifer.testing.registry  # noqa: F401
from junifer.api import run


datagrabber = {
    "kind": "OasisVBMTestingDataGrabber",
}

markers = [
    {
        "name": "Schaefer1000x7_TrimMean80",
        "kind": "ParcelAggregation",
        "parcellation": "Schaefer1000x7",
        "method": "trim_mean",
        "method_params": {"proportiontocut": 0.2},
    },
    {
        "name": "Schaefer1000x7_Mean",
        "kind": "ParcelAggregation",
        "parcellation": "Schaefer1000x7",
        "method": "mean",
    },
    {
        "name": "Schaefer1000x7_Std",
        "kind": "ParcelAggregation",
        "parcellation": "Schaefer1000x7",
        "method": "std",
    },
]

storage = {
    "kind": "SQLiteFeatureStorage",
}

with tempfile.TemporaryDirectory() as tmpdir:
    uri = f"{tmpdir}/test.sqlite"
    storage["uri"] = uri
    run(
        workdir="/tmp",
        datagrabber=datagrabber,
        markers=markers,
        storage=storage,
    )