8.3. UKB VBM GMD Extraction

Authors: Federico Raimondo

License: BSD 3 clause

2025-05-09 12:09:27,172 - JUNIFER - INFO - Registering OasisVBMTestingDataGrabber in datagrabber
2025-05-09 12:09:27,172 - JUNIFER - INFO - Registering SPMAuditoryTestingDataGrabber in datagrabber
2025-05-09 12:09:27,172 - JUNIFER - INFO - Registering PartlyCloudyTestingDataGrabber in datagrabber
2025-05-09 12:09:33,375 - JUNIFER - INFO - Registering ParcelAggregation in marker
2025-05-09 12:09:33,383 - JUNIFER - INFO - Registering SQLiteFeatureStorage in storage
2025-05-09 12:09:33,383 - JUNIFER - INFO - Validating Marker Collection
2025-05-09 12:09:33,383 - JUNIFER - INFO - DataGrabber output type: ['VBM_GM']
2025-05-09 12:09:33,383 - JUNIFER - INFO - Validating Data Reader:
2025-05-09 12:09:33,383 - JUNIFER - INFO - Data Reader output type: ['VBM_GM']
2025-05-09 12:09:33,383 - JUNIFER - INFO - Validating Marker: Schaefer1000x7_TrimMean80
2025-05-09 12:09:33,383 - JUNIFER - INFO - Marker output type: ['vector']
2025-05-09 12:09:33,383 - JUNIFER - INFO - Validating storage for Schaefer1000x7_TrimMean80
2025-05-09 12:09:33,383 - JUNIFER - INFO - Validating Marker: Schaefer1000x7_Mean
2025-05-09 12:09:33,383 - JUNIFER - INFO - Marker output type: ['vector']
2025-05-09 12:09:33,383 - JUNIFER - INFO - Validating storage for Schaefer1000x7_Mean
2025-05-09 12:09:33,383 - JUNIFER - INFO - Validating Marker: Schaefer1000x7_Std
2025-05-09 12:09:33,383 - JUNIFER - INFO - Marker output type: ['vector']
2025-05-09 12:09:33,383 - JUNIFER - INFO - Validating storage for Schaefer1000x7_Std

Added README.md to /github/home/nilearn_data


Dataset created in /github/home/nilearn_data/oasis1

Downloading data from https://www.nitrc.org/frs/download.php/6364/archive_dartel.tgz ...

Downloaded 23928832 of 905208634 bytes (2.6%,   37.4s remaining)
Downloaded 67379200 of 905208634 bytes (7.4%,   25.6s remaining)
Downloaded 116260864 of 905208634 bytes (12.8%,   20.8s remaining)
Downloaded 160718848 of 905208634 bytes (17.8%,   18.9s remaining)
Downloaded 207675392 of 905208634 bytes (22.9%,   17.1s remaining)
Downloaded 255680512 of 905208634 bytes (28.2%,   15.6s remaining)
Downloaded 302153728 of 905208634 bytes (33.4%,   14.3s remaining)
Downloaded 351985664 of 905208634 bytes (38.9%,   12.9s remaining)
Downloaded 400875520 of 905208634 bytes (44.3%,   11.6s remaining)
Downloaded 448946176 of 905208634 bytes (49.6%,   10.4s remaining)
Downloaded 498409472 of 905208634 bytes (55.1%,    9.2s remaining)
Downloaded 547938304 of 905208634 bytes (60.5%,    8.0s remaining)
Downloaded 593428480 of 905208634 bytes (65.6%,    7.0s remaining)
Downloaded 642375680 of 905208634 bytes (71.0%,    5.9s remaining)
Downloaded 693280768 of 905208634 bytes (76.6%,    4.7s remaining)
Downloaded 744243200 of 905208634 bytes (82.2%,    3.5s remaining)
Downloaded 794853376 of 905208634 bytes (87.8%,    2.4s remaining)
Downloaded 843751424 of 905208634 bytes (93.2%,    1.3s remaining)
Downloaded 892616704 of 905208634 bytes (98.6%,    0.3s remaining) ...done. (20 seconds, 0 min)
Extracting data from /github/home/nilearn_data/oasis1/7088b0bf88f5650db26e32ec3afdd589/archive_dartel.tgz..... done.
2025-05-09 12:09:58,816 - JUNIFER - INFO - Getting element sub-01
2025-05-09 12:09:58,816 - JUNIFER - INFO - Fitting pipeline
2025-05-09 12:09:58,816 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0001_MR1/mwrc1OAS1_0001_MR1_mpr_anon_fslswapdim_bet.nii.gz
2025-05-09 12:09:58,816 - JUNIFER - INFO - VBM_GM is of type NIFTI
2025-05-09 12:09:58,817 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2025-05-09 12:09:58,817 - JUNIFER - INFO - Computing VBM_GM
2025-05-09 12:09:58,818 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-05-09 12:09:58,818 - JUNIFER - INFO - Parcellation parameters:
2025-05-09 12:09:58,818 - JUNIFER - INFO -      resolution: None
2025-05-09 12:09:58,818 - JUNIFER - INFO -      n_rois: 1000
2025-05-09 12:09:58,818 - JUNIFER - INFO -      yeo_networks: 7
2025-05-09 12:09:58,818 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-05-09 12:10:00,278 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v2/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-05-09 12:10:02,651 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
Downloading https://templateflow.s3.amazonaws.com/tpl-MNI152Lin/tpl-MNI152Lin_res-01_T1w.nii.gz

  0%|          | 0.00/10.7M [00:00<?, ?B/s]
  1%|          | 63.5k/10.7M [00:00<00:23, 456kB/s]
  3%|▎         | 359k/10.7M [00:00<00:07, 1.43MB/s]
 12%|█▏        | 1.30M/10.7M [00:00<00:02, 3.83MB/s]
 44%|████▍     | 4.74M/10.7M [00:00<00:00, 12.0MB/s]
 98%|█████████▊| 10.4M/10.7M [00:00<00:00, 24.9MB/s]
100%|██████████| 10.7M/10.7M [00:00<00:00, 15.2MB/s]
2025-05-09 12:10:04,229 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpx5xr3u50/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_8804bed6-2cce-11f0-b407-763dc8eb2af0uvge2ytz/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpx5xr3u50/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_8804bed6-2cce-11f0-b407-763dc8eb2af0uvge2ytz/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpx5xr3u50/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_8804bed6-2cce-11f0-b407-763dc8eb2af0uvge2ytz/parcellation_warped.nii.gz
2025-05-09 12:10:58,124 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-05-09 12:10:59,658 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp4mrr5g3q/test.sqlite (multiple output)>
2025-05-09 12:10:59,836 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2025-05-09 12:10:59,836 - JUNIFER - INFO - Computing VBM_GM
2025-05-09 12:10:59,836 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-05-09 12:10:59,836 - JUNIFER - INFO - Parcellation parameters:
2025-05-09 12:10:59,836 - JUNIFER - INFO -      resolution: None
2025-05-09 12:10:59,836 - JUNIFER - INFO -      n_rois: 1000
2025-05-09 12:10:59,836 - JUNIFER - INFO -      yeo_networks: 7
2025-05-09 12:10:59,836 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-05-09 12:10:59,911 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v2/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-05-09 12:11:02,430 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-05-09 12:11:02,941 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpx5xr3u50/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_ab8f965a-2cce-11f0-b407-763dc8eb2af0oq3jh22x/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpx5xr3u50/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_ab8f965a-2cce-11f0-b407-763dc8eb2af0oq3jh22x/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpx5xr3u50/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_ab8f965a-2cce-11f0-b407-763dc8eb2af0oq3jh22x/parcellation_warped.nii.gz
2025-05-09 12:11:56,797 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-05-09 12:11:58,300 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp4mrr5g3q/test.sqlite (multiple output)>
2025-05-09 12:11:58,483 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2025-05-09 12:11:58,483 - JUNIFER - INFO - Computing VBM_GM
2025-05-09 12:11:58,484 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-05-09 12:11:58,484 - JUNIFER - INFO - Parcellation parameters:
2025-05-09 12:11:58,484 - JUNIFER - INFO -      resolution: None
2025-05-09 12:11:58,484 - JUNIFER - INFO -      n_rois: 1000
2025-05-09 12:11:58,484 - JUNIFER - INFO -      yeo_networks: 7
2025-05-09 12:11:58,484 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-05-09 12:11:58,559 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v2/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-05-09 12:12:01,035 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-05-09 12:12:01,592 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpx5xr3u50/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_ce84755e-2cce-11f0-b407-763dc8eb2af01ctxj6zq/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpx5xr3u50/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_ce84755e-2cce-11f0-b407-763dc8eb2af01ctxj6zq/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpx5xr3u50/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_ce84755e-2cce-11f0-b407-763dc8eb2af01ctxj6zq/parcellation_warped.nii.gz
2025-05-09 12:12:56,155 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-05-09 12:12:57,649 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp4mrr5g3q/test.sqlite (multiple output)>
2025-05-09 12:12:57,830 - JUNIFER - INFO - Marker collection fitting done
2025-05-09 12:12:57,837 - JUNIFER - INFO - Getting element sub-02
2025-05-09 12:12:57,837 - JUNIFER - INFO - Fitting pipeline
2025-05-09 12:12:57,837 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0002_MR1/mwrc1OAS1_0002_MR1_mpr_anon_fslswapdim_bet.nii.gz
2025-05-09 12:12:57,837 - JUNIFER - INFO - VBM_GM is of type NIFTI
2025-05-09 12:12:57,838 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2025-05-09 12:12:57,838 - JUNIFER - INFO - Computing VBM_GM
2025-05-09 12:12:57,839 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-05-09 12:12:57,839 - JUNIFER - INFO - Parcellation parameters:
2025-05-09 12:12:57,839 - JUNIFER - INFO -      resolution: None
2025-05-09 12:12:57,839 - JUNIFER - INFO -      n_rois: 1000
2025-05-09 12:12:57,839 - JUNIFER - INFO -      yeo_networks: 7
2025-05-09 12:12:57,839 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-05-09 12:12:57,913 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v2/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-05-09 12:13:00,357 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-05-09 12:13:00,913 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp9oshvqbq/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_f1e471a2-2cce-11f0-b407-763dc8eb2af0ra6sxot9/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp9oshvqbq/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_f1e471a2-2cce-11f0-b407-763dc8eb2af0ra6sxot9/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmp9oshvqbq/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_f1e471a2-2cce-11f0-b407-763dc8eb2af0ra6sxot9/parcellation_warped.nii.gz
2025-05-09 12:13:55,735 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-05-09 12:13:57,210 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp4mrr5g3q/test.sqlite (multiple output)>
2025-05-09 12:13:57,385 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2025-05-09 12:13:57,386 - JUNIFER - INFO - Computing VBM_GM
2025-05-09 12:13:57,386 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-05-09 12:13:57,386 - JUNIFER - INFO - Parcellation parameters:
2025-05-09 12:13:57,386 - JUNIFER - INFO -      resolution: None
2025-05-09 12:13:57,386 - JUNIFER - INFO -      n_rois: 1000
2025-05-09 12:13:57,386 - JUNIFER - INFO -      yeo_networks: 7
2025-05-09 12:13:57,386 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-05-09 12:13:57,460 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v2/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-05-09 12:13:59,844 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-05-09 12:14:00,356 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp9oshvqbq/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_1563184a-2ccf-11f0-b407-763dc8eb2af060s0xu_p/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp9oshvqbq/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_1563184a-2ccf-11f0-b407-763dc8eb2af060s0xu_p/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmp9oshvqbq/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_1563184a-2ccf-11f0-b407-763dc8eb2af060s0xu_p/parcellation_warped.nii.gz
2025-05-09 12:14:54,835 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-05-09 12:14:56,320 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp4mrr5g3q/test.sqlite (multiple output)>
2025-05-09 12:14:56,496 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2025-05-09 12:14:56,496 - JUNIFER - INFO - Computing VBM_GM
2025-05-09 12:14:56,496 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-05-09 12:14:56,496 - JUNIFER - INFO - Parcellation parameters:
2025-05-09 12:14:56,496 - JUNIFER - INFO -      resolution: None
2025-05-09 12:14:56,496 - JUNIFER - INFO -      n_rois: 1000
2025-05-09 12:14:56,496 - JUNIFER - INFO -      yeo_networks: 7
2025-05-09 12:14:56,496 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-05-09 12:14:56,570 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v2/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-05-09 12:14:58,987 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-05-09 12:14:59,497 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp9oshvqbq/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_389eb292-2ccf-11f0-b407-763dc8eb2af0s1jy_0j7/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp9oshvqbq/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_389eb292-2ccf-11f0-b407-763dc8eb2af0s1jy_0j7/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmp9oshvqbq/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_389eb292-2ccf-11f0-b407-763dc8eb2af0s1jy_0j7/parcellation_warped.nii.gz
2025-05-09 12:15:53,228 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-05-09 12:15:54,704 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp4mrr5g3q/test.sqlite (multiple output)>
2025-05-09 12:15:54,883 - JUNIFER - INFO - Marker collection fitting done
2025-05-09 12:15:54,890 - JUNIFER - INFO - Getting element sub-03
2025-05-09 12:15:54,890 - JUNIFER - INFO - Fitting pipeline
2025-05-09 12:15:54,890 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0003_MR1/mwrc1OAS1_0003_MR1_mpr_anon_fslswapdim_bet.nii.gz
2025-05-09 12:15:54,890 - JUNIFER - INFO - VBM_GM is of type NIFTI
2025-05-09 12:15:54,891 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2025-05-09 12:15:54,892 - JUNIFER - INFO - Computing VBM_GM
2025-05-09 12:15:54,892 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-05-09 12:15:54,892 - JUNIFER - INFO - Parcellation parameters:
2025-05-09 12:15:54,892 - JUNIFER - INFO -      resolution: None
2025-05-09 12:15:54,892 - JUNIFER - INFO -      n_rois: 1000
2025-05-09 12:15:54,892 - JUNIFER - INFO -      yeo_networks: 7
2025-05-09 12:15:54,892 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-05-09 12:15:54,967 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v2/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-05-09 12:15:57,365 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-05-09 12:15:57,876 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpmp657_fv/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_5b6d5d28-2ccf-11f0-b407-763dc8eb2af01x43rufi/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpmp657_fv/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_5b6d5d28-2ccf-11f0-b407-763dc8eb2af01x43rufi/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpmp657_fv/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_5b6d5d28-2ccf-11f0-b407-763dc8eb2af01x43rufi/parcellation_warped.nii.gz
2025-05-09 12:16:51,677 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-05-09 12:16:53,190 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp4mrr5g3q/test.sqlite (multiple output)>
2025-05-09 12:16:53,363 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2025-05-09 12:16:53,363 - JUNIFER - INFO - Computing VBM_GM
2025-05-09 12:16:53,364 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-05-09 12:16:53,364 - JUNIFER - INFO - Parcellation parameters:
2025-05-09 12:16:53,364 - JUNIFER - INFO -      resolution: None
2025-05-09 12:16:53,364 - JUNIFER - INFO -      n_rois: 1000
2025-05-09 12:16:53,364 - JUNIFER - INFO -      yeo_networks: 7
2025-05-09 12:16:53,364 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-05-09 12:16:53,439 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v2/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-05-09 12:16:55,843 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-05-09 12:16:56,403 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpmp657_fv/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_7e477a7c-2ccf-11f0-b407-763dc8eb2af0n7dxbwvm/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpmp657_fv/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_7e477a7c-2ccf-11f0-b407-763dc8eb2af0n7dxbwvm/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpmp657_fv/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_7e477a7c-2ccf-11f0-b407-763dc8eb2af0n7dxbwvm/parcellation_warped.nii.gz
2025-05-09 12:17:50,018 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-05-09 12:17:51,519 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp4mrr5g3q/test.sqlite (multiple output)>
2025-05-09 12:17:51,698 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2025-05-09 12:17:51,698 - JUNIFER - INFO - Computing VBM_GM
2025-05-09 12:17:51,698 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-05-09 12:17:51,698 - JUNIFER - INFO - Parcellation parameters:
2025-05-09 12:17:51,698 - JUNIFER - INFO -      resolution: None
2025-05-09 12:17:51,698 - JUNIFER - INFO -      n_rois: 1000
2025-05-09 12:17:51,698 - JUNIFER - INFO -      yeo_networks: 7
2025-05-09 12:17:51,698 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-05-09 12:17:51,772 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v2/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-05-09 12:17:54,180 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-05-09 12:17:54,691 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpmp657_fv/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a10c600e-2ccf-11f0-b407-763dc8eb2af0twqmeugx/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpmp657_fv/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a10c600e-2ccf-11f0-b407-763dc8eb2af0twqmeugx/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpmp657_fv/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a10c600e-2ccf-11f0-b407-763dc8eb2af0twqmeugx/parcellation_warped.nii.gz
2025-05-09 12:18:48,980 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-05-09 12:18:50,547 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp4mrr5g3q/test.sqlite (multiple output)>
2025-05-09 12:18:50,729 - JUNIFER - INFO - Marker collection fitting done
2025-05-09 12:18:50,737 - JUNIFER - INFO - Getting element sub-04
2025-05-09 12:18:50,737 - JUNIFER - INFO - Fitting pipeline
2025-05-09 12:18:50,737 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0004_MR1/mwrc1OAS1_0004_MR1_mpr_anon_fslswapdim_bet.nii.gz
2025-05-09 12:18:50,737 - JUNIFER - INFO - VBM_GM is of type NIFTI
2025-05-09 12:18:50,738 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2025-05-09 12:18:50,738 - JUNIFER - INFO - Computing VBM_GM
2025-05-09 12:18:50,738 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-05-09 12:18:50,738 - JUNIFER - INFO - Parcellation parameters:
2025-05-09 12:18:50,738 - JUNIFER - INFO -      resolution: None
2025-05-09 12:18:50,739 - JUNIFER - INFO -      n_rois: 1000
2025-05-09 12:18:50,739 - JUNIFER - INFO -      yeo_networks: 7
2025-05-09 12:18:50,739 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-05-09 12:18:50,813 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v2/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-05-09 12:18:53,242 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-05-09 12:18:53,752 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpzprk0nhz/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_c43d89c2-2ccf-11f0-b407-763dc8eb2af05pqax49i/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpzprk0nhz/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_c43d89c2-2ccf-11f0-b407-763dc8eb2af05pqax49i/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpzprk0nhz/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_c43d89c2-2ccf-11f0-b407-763dc8eb2af05pqax49i/parcellation_warped.nii.gz
2025-05-09 12:19:47,734 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-05-09 12:19:49,277 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp4mrr5g3q/test.sqlite (multiple output)>
2025-05-09 12:19:49,452 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2025-05-09 12:19:49,452 - JUNIFER - INFO - Computing VBM_GM
2025-05-09 12:19:49,452 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-05-09 12:19:49,452 - JUNIFER - INFO - Parcellation parameters:
2025-05-09 12:19:49,452 - JUNIFER - INFO -      resolution: None
2025-05-09 12:19:49,452 - JUNIFER - INFO -      n_rois: 1000
2025-05-09 12:19:49,452 - JUNIFER - INFO -      yeo_networks: 7
2025-05-09 12:19:49,452 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-05-09 12:19:49,526 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v2/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-05-09 12:19:51,942 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-05-09 12:19:52,455 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpzprk0nhz/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_e73c6920-2ccf-11f0-b407-763dc8eb2af0df40ojp5/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpzprk0nhz/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_e73c6920-2ccf-11f0-b407-763dc8eb2af0df40ojp5/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpzprk0nhz/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_e73c6920-2ccf-11f0-b407-763dc8eb2af0df40ojp5/parcellation_warped.nii.gz
2025-05-09 12:20:45,659 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-05-09 12:20:47,174 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp4mrr5g3q/test.sqlite (multiple output)>
2025-05-09 12:20:47,351 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2025-05-09 12:20:47,351 - JUNIFER - INFO - Computing VBM_GM
2025-05-09 12:20:47,351 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-05-09 12:20:47,351 - JUNIFER - INFO - Parcellation parameters:
2025-05-09 12:20:47,351 - JUNIFER - INFO -      resolution: None
2025-05-09 12:20:47,352 - JUNIFER - INFO -      n_rois: 1000
2025-05-09 12:20:47,352 - JUNIFER - INFO -      yeo_networks: 7
2025-05-09 12:20:47,352 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-05-09 12:20:47,427 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v2/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-05-09 12:20:49,837 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-05-09 12:20:50,345 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpzprk0nhz/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_09c007fe-2cd0-11f0-b407-763dc8eb2af09ik8ibw5/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpzprk0nhz/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_09c007fe-2cd0-11f0-b407-763dc8eb2af09ik8ibw5/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpzprk0nhz/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_09c007fe-2cd0-11f0-b407-763dc8eb2af09ik8ibw5/parcellation_warped.nii.gz
2025-05-09 12:21:44,417 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-05-09 12:21:45,976 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp4mrr5g3q/test.sqlite (multiple output)>
2025-05-09 12:21:46,156 - JUNIFER - INFO - Marker collection fitting done
2025-05-09 12:21:46,163 - JUNIFER - INFO - Getting element sub-05
2025-05-09 12:21:46,163 - JUNIFER - INFO - Fitting pipeline
2025-05-09 12:21:46,163 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0005_MR1/mwrc1OAS1_0005_MR1_mpr_anon_fslswapdim_bet.nii.gz
2025-05-09 12:21:46,163 - JUNIFER - INFO - VBM_GM is of type NIFTI
2025-05-09 12:21:46,164 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2025-05-09 12:21:46,164 - JUNIFER - INFO - Computing VBM_GM
2025-05-09 12:21:46,164 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-05-09 12:21:46,164 - JUNIFER - INFO - Parcellation parameters:
2025-05-09 12:21:46,165 - JUNIFER - INFO -      resolution: None
2025-05-09 12:21:46,165 - JUNIFER - INFO -      n_rois: 1000
2025-05-09 12:21:46,165 - JUNIFER - INFO -      yeo_networks: 7
2025-05-09 12:21:46,165 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-05-09 12:21:46,239 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v2/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-05-09 12:21:48,687 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-05-09 12:21:49,199 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpi7b0dyc9/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_2ccd5648-2cd0-11f0-b407-763dc8eb2af0ug5cjva6/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpi7b0dyc9/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_2ccd5648-2cd0-11f0-b407-763dc8eb2af0ug5cjva6/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpi7b0dyc9/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_2ccd5648-2cd0-11f0-b407-763dc8eb2af0ug5cjva6/parcellation_warped.nii.gz
2025-05-09 12:22:42,567 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-05-09 12:22:44,114 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp4mrr5g3q/test.sqlite (multiple output)>
2025-05-09 12:22:44,288 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2025-05-09 12:22:44,288 - JUNIFER - INFO - Computing VBM_GM
2025-05-09 12:22:44,288 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-05-09 12:22:44,288 - JUNIFER - INFO - Parcellation parameters:
2025-05-09 12:22:44,288 - JUNIFER - INFO -      resolution: None
2025-05-09 12:22:44,288 - JUNIFER - INFO -      n_rois: 1000
2025-05-09 12:22:44,288 - JUNIFER - INFO -      yeo_networks: 7
2025-05-09 12:22:44,288 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-05-09 12:22:44,363 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v2/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-05-09 12:22:46,767 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-05-09 12:22:47,326 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpi7b0dyc9/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_4f71ef92-2cd0-11f0-b407-763dc8eb2af0mb192txy/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpi7b0dyc9/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_4f71ef92-2cd0-11f0-b407-763dc8eb2af0mb192txy/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpi7b0dyc9/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_4f71ef92-2cd0-11f0-b407-763dc8eb2af0mb192txy/parcellation_warped.nii.gz
2025-05-09 12:23:40,005 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-05-09 12:23:41,489 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp4mrr5g3q/test.sqlite (multiple output)>
2025-05-09 12:23:41,672 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2025-05-09 12:23:41,672 - JUNIFER - INFO - Computing VBM_GM
2025-05-09 12:23:41,672 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-05-09 12:23:41,672 - JUNIFER - INFO - Parcellation parameters:
2025-05-09 12:23:41,672 - JUNIFER - INFO -      resolution: None
2025-05-09 12:23:41,672 - JUNIFER - INFO -      n_rois: 1000
2025-05-09 12:23:41,672 - JUNIFER - INFO -      yeo_networks: 7
2025-05-09 12:23:41,672 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-05-09 12:23:41,746 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v2/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-05-09 12:23:44,169 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-05-09 12:23:44,679 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpi7b0dyc9/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_71a611b0-2cd0-11f0-b407-763dc8eb2af01na4qxij/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpi7b0dyc9/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_71a611b0-2cd0-11f0-b407-763dc8eb2af01na4qxij/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpi7b0dyc9/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_71a611b0-2cd0-11f0-b407-763dc8eb2af01na4qxij/parcellation_warped.nii.gz
2025-05-09 12:24:38,666 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-05-09 12:24:40,188 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp4mrr5g3q/test.sqlite (multiple output)>
2025-05-09 12:24:40,369 - JUNIFER - INFO - Marker collection fitting done
2025-05-09 12:24:40,376 - JUNIFER - INFO - Getting element sub-06
2025-05-09 12:24:40,376 - JUNIFER - INFO - Fitting pipeline
2025-05-09 12:24:40,377 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0006_MR1/mwrc1OAS1_0006_MR1_mpr_anon_fslswapdim_bet.nii.gz
2025-05-09 12:24:40,377 - JUNIFER - INFO - VBM_GM is of type NIFTI
2025-05-09 12:24:40,378 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2025-05-09 12:24:40,378 - JUNIFER - INFO - Computing VBM_GM
2025-05-09 12:24:40,378 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-05-09 12:24:40,378 - JUNIFER - INFO - Parcellation parameters:
2025-05-09 12:24:40,378 - JUNIFER - INFO -      resolution: None
2025-05-09 12:24:40,378 - JUNIFER - INFO -      n_rois: 1000
2025-05-09 12:24:40,378 - JUNIFER - INFO -      yeo_networks: 7
2025-05-09 12:24:40,378 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-05-09 12:24:40,453 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v2/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-05-09 12:24:42,886 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-05-09 12:24:43,447 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmphw47i4mh/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_94a440d8-2cd0-11f0-b407-763dc8eb2af00jt18cx3/prewarp_parcellation.nii.gz -r /tmp/junifer/tmphw47i4mh/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_94a440d8-2cd0-11f0-b407-763dc8eb2af00jt18cx3/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmphw47i4mh/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_94a440d8-2cd0-11f0-b407-763dc8eb2af00jt18cx3/parcellation_warped.nii.gz
2025-05-09 12:25:38,028 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-05-09 12:25:39,529 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp4mrr5g3q/test.sqlite (multiple output)>
2025-05-09 12:25:39,702 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2025-05-09 12:25:39,702 - JUNIFER - INFO - Computing VBM_GM
2025-05-09 12:25:39,702 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-05-09 12:25:39,702 - JUNIFER - INFO - Parcellation parameters:
2025-05-09 12:25:39,702 - JUNIFER - INFO -      resolution: None
2025-05-09 12:25:39,702 - JUNIFER - INFO -      n_rois: 1000
2025-05-09 12:25:39,702 - JUNIFER - INFO -      yeo_networks: 7
2025-05-09 12:25:39,702 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-05-09 12:25:39,776 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v2/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-05-09 12:25:42,193 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-05-09 12:25:42,751 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmphw47i4mh/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_b80005f8-2cd0-11f0-b407-763dc8eb2af0ndgkewum/prewarp_parcellation.nii.gz -r /tmp/junifer/tmphw47i4mh/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_b80005f8-2cd0-11f0-b407-763dc8eb2af0ndgkewum/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmphw47i4mh/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_b80005f8-2cd0-11f0-b407-763dc8eb2af0ndgkewum/parcellation_warped.nii.gz
2025-05-09 12:26:37,224 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-05-09 12:26:38,700 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp4mrr5g3q/test.sqlite (multiple output)>
2025-05-09 12:26:38,879 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2025-05-09 12:26:38,879 - JUNIFER - INFO - Computing VBM_GM
2025-05-09 12:26:38,879 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-05-09 12:26:38,879 - JUNIFER - INFO - Parcellation parameters:
2025-05-09 12:26:38,879 - JUNIFER - INFO -      resolution: None
2025-05-09 12:26:38,879 - JUNIFER - INFO -      n_rois: 1000
2025-05-09 12:26:38,879 - JUNIFER - INFO -      yeo_networks: 7
2025-05-09 12:26:38,879 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-05-09 12:26:38,953 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v2/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-05-09 12:26:41,357 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-05-09 12:26:41,914 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmphw47i4mh/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_db4572a0-2cd0-11f0-b407-763dc8eb2af0aav4zyfn/prewarp_parcellation.nii.gz -r /tmp/junifer/tmphw47i4mh/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_db4572a0-2cd0-11f0-b407-763dc8eb2af0aav4zyfn/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmphw47i4mh/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_db4572a0-2cd0-11f0-b407-763dc8eb2af0aav4zyfn/parcellation_warped.nii.gz
2025-05-09 12:27:36,853 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-05-09 12:27:38,282 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp4mrr5g3q/test.sqlite (multiple output)>
2025-05-09 12:27:38,461 - JUNIFER - INFO - Marker collection fitting done
2025-05-09 12:27:38,468 - JUNIFER - INFO - Getting element sub-07
2025-05-09 12:27:38,468 - JUNIFER - INFO - Fitting pipeline
2025-05-09 12:27:38,468 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0007_MR1/mwrc1OAS1_0007_MR1_mpr_anon_fslswapdim_bet.nii.gz
2025-05-09 12:27:38,468 - JUNIFER - INFO - VBM_GM is of type NIFTI
2025-05-09 12:27:38,469 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2025-05-09 12:27:38,469 - JUNIFER - INFO - Computing VBM_GM
2025-05-09 12:27:38,469 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-05-09 12:27:38,470 - JUNIFER - INFO - Parcellation parameters:
2025-05-09 12:27:38,470 - JUNIFER - INFO -      resolution: None
2025-05-09 12:27:38,470 - JUNIFER - INFO -      n_rois: 1000
2025-05-09 12:27:38,470 - JUNIFER - INFO -      yeo_networks: 7
2025-05-09 12:27:38,470 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-05-09 12:27:38,544 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v2/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-05-09 12:27:40,954 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-05-09 12:27:41,511 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp3ucg5rrl/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_feca7fe0-2cd0-11f0-b407-763dc8eb2af0381qw59z/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp3ucg5rrl/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_feca7fe0-2cd0-11f0-b407-763dc8eb2af0381qw59z/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmp3ucg5rrl/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_feca7fe0-2cd0-11f0-b407-763dc8eb2af0381qw59z/parcellation_warped.nii.gz
2025-05-09 12:28:35,509 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-05-09 12:28:36,982 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp4mrr5g3q/test.sqlite (multiple output)>
2025-05-09 12:28:37,155 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2025-05-09 12:28:37,155 - JUNIFER - INFO - Computing VBM_GM
2025-05-09 12:28:37,155 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-05-09 12:28:37,155 - JUNIFER - INFO - Parcellation parameters:
2025-05-09 12:28:37,155 - JUNIFER - INFO -      resolution: None
2025-05-09 12:28:37,155 - JUNIFER - INFO -      n_rois: 1000
2025-05-09 12:28:37,155 - JUNIFER - INFO -      yeo_networks: 7
2025-05-09 12:28:37,155 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-05-09 12:28:37,230 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v2/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-05-09 12:28:39,624 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-05-09 12:28:40,184 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp3ucg5rrl/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_21c5a4ca-2cd1-11f0-b407-763dc8eb2af0xabulnzz/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp3ucg5rrl/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_21c5a4ca-2cd1-11f0-b407-763dc8eb2af0xabulnzz/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmp3ucg5rrl/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_21c5a4ca-2cd1-11f0-b407-763dc8eb2af0xabulnzz/parcellation_warped.nii.gz
2025-05-09 12:29:35,293 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-05-09 12:29:36,756 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp4mrr5g3q/test.sqlite (multiple output)>
2025-05-09 12:29:36,933 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2025-05-09 12:29:36,933 - JUNIFER - INFO - Computing VBM_GM
2025-05-09 12:29:36,933 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-05-09 12:29:36,933 - JUNIFER - INFO - Parcellation parameters:
2025-05-09 12:29:36,933 - JUNIFER - INFO -      resolution: None
2025-05-09 12:29:36,933 - JUNIFER - INFO -      n_rois: 1000
2025-05-09 12:29:36,933 - JUNIFER - INFO -      yeo_networks: 7
2025-05-09 12:29:36,933 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-05-09 12:29:37,007 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v2/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-05-09 12:29:39,409 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-05-09 12:29:39,917 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp3ucg5rrl/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_456649f2-2cd1-11f0-b407-763dc8eb2af0nou5lwdz/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp3ucg5rrl/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_456649f2-2cd1-11f0-b407-763dc8eb2af0nou5lwdz/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmp3ucg5rrl/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_456649f2-2cd1-11f0-b407-763dc8eb2af0nou5lwdz/parcellation_warped.nii.gz
2025-05-09 12:30:34,077 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-05-09 12:30:35,673 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp4mrr5g3q/test.sqlite (multiple output)>
2025-05-09 12:30:35,855 - JUNIFER - INFO - Marker collection fitting done
2025-05-09 12:30:35,862 - JUNIFER - INFO - Getting element sub-08
2025-05-09 12:30:35,862 - JUNIFER - INFO - Fitting pipeline
2025-05-09 12:30:35,862 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0009_MR1/mwrc1OAS1_0009_MR1_mpr_anon_fslswapdim_bet.nii.gz
2025-05-09 12:30:35,862 - JUNIFER - INFO - VBM_GM is of type NIFTI
2025-05-09 12:30:35,863 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2025-05-09 12:30:35,863 - JUNIFER - INFO - Computing VBM_GM
2025-05-09 12:30:35,863 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-05-09 12:30:35,864 - JUNIFER - INFO - Parcellation parameters:
2025-05-09 12:30:35,864 - JUNIFER - INFO -      resolution: None
2025-05-09 12:30:35,864 - JUNIFER - INFO -      n_rois: 1000
2025-05-09 12:30:35,864 - JUNIFER - INFO -      yeo_networks: 7
2025-05-09 12:30:35,864 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-05-09 12:30:35,937 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v2/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-05-09 12:30:38,350 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-05-09 12:30:38,909 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpzgvzr59h/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_688695e0-2cd1-11f0-b407-763dc8eb2af0xfpt5gwc/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpzgvzr59h/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_688695e0-2cd1-11f0-b407-763dc8eb2af0xfpt5gwc/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpzgvzr59h/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_688695e0-2cd1-11f0-b407-763dc8eb2af0xfpt5gwc/parcellation_warped.nii.gz
2025-05-09 12:31:32,834 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-05-09 12:31:34,317 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp4mrr5g3q/test.sqlite (multiple output)>
2025-05-09 12:31:34,492 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2025-05-09 12:31:34,492 - JUNIFER - INFO - Computing VBM_GM
2025-05-09 12:31:34,492 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-05-09 12:31:34,492 - JUNIFER - INFO - Parcellation parameters:
2025-05-09 12:31:34,492 - JUNIFER - INFO -      resolution: None
2025-05-09 12:31:34,492 - JUNIFER - INFO -      n_rois: 1000
2025-05-09 12:31:34,492 - JUNIFER - INFO -      yeo_networks: 7
2025-05-09 12:31:34,492 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-05-09 12:31:34,566 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v2/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-05-09 12:31:36,987 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-05-09 12:31:37,545 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpzgvzr59h/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_8b78d996-2cd1-11f0-b407-763dc8eb2af044kf3sp4/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpzgvzr59h/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_8b78d996-2cd1-11f0-b407-763dc8eb2af044kf3sp4/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpzgvzr59h/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_8b78d996-2cd1-11f0-b407-763dc8eb2af044kf3sp4/parcellation_warped.nii.gz
2025-05-09 12:32:31,373 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-05-09 12:32:32,850 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp4mrr5g3q/test.sqlite (multiple output)>
2025-05-09 12:32:33,030 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2025-05-09 12:32:33,030 - JUNIFER - INFO - Computing VBM_GM
2025-05-09 12:32:33,030 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-05-09 12:32:33,030 - JUNIFER - INFO - Parcellation parameters:
2025-05-09 12:32:33,030 - JUNIFER - INFO -      resolution: None
2025-05-09 12:32:33,030 - JUNIFER - INFO -      n_rois: 1000
2025-05-09 12:32:33,030 - JUNIFER - INFO -      yeo_networks: 7
2025-05-09 12:32:33,030 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-05-09 12:32:33,104 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v2/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-05-09 12:32:35,496 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-05-09 12:32:36,053 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpzgvzr59h/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_ae5d0694-2cd1-11f0-b407-763dc8eb2af0h11hbhx4/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpzgvzr59h/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_ae5d0694-2cd1-11f0-b407-763dc8eb2af0h11hbhx4/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpzgvzr59h/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_ae5d0694-2cd1-11f0-b407-763dc8eb2af0h11hbhx4/parcellation_warped.nii.gz
2025-05-09 12:33:29,727 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-05-09 12:33:31,253 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp4mrr5g3q/test.sqlite (multiple output)>
2025-05-09 12:33:31,440 - JUNIFER - INFO - Marker collection fitting done
2025-05-09 12:33:31,447 - JUNIFER - INFO - Getting element sub-09
2025-05-09 12:33:31,447 - JUNIFER - INFO - Fitting pipeline
2025-05-09 12:33:31,447 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0010_MR1/mwrc1OAS1_0010_MR1_mpr_anon_fslswapdim_bet.nii.gz
2025-05-09 12:33:31,447 - JUNIFER - INFO - VBM_GM is of type NIFTI
2025-05-09 12:33:31,448 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2025-05-09 12:33:31,449 - JUNIFER - INFO - Computing VBM_GM
2025-05-09 12:33:31,449 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-05-09 12:33:31,449 - JUNIFER - INFO - Parcellation parameters:
2025-05-09 12:33:31,449 - JUNIFER - INFO -      resolution: None
2025-05-09 12:33:31,449 - JUNIFER - INFO -      n_rois: 1000
2025-05-09 12:33:31,449 - JUNIFER - INFO -      yeo_networks: 7
2025-05-09 12:33:31,449 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-05-09 12:33:31,523 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v2/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-05-09 12:33:33,908 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-05-09 12:33:34,418 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp2v8qi6o4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_d12e9296-2cd1-11f0-b407-763dc8eb2af0njce1fb7/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp2v8qi6o4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_d12e9296-2cd1-11f0-b407-763dc8eb2af0njce1fb7/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmp2v8qi6o4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_d12e9296-2cd1-11f0-b407-763dc8eb2af0njce1fb7/parcellation_warped.nii.gz
2025-05-09 12:34:28,719 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-05-09 12:34:30,251 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp4mrr5g3q/test.sqlite (multiple output)>
2025-05-09 12:34:30,424 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2025-05-09 12:34:30,424 - JUNIFER - INFO - Computing VBM_GM
2025-05-09 12:34:30,424 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-05-09 12:34:30,424 - JUNIFER - INFO - Parcellation parameters:
2025-05-09 12:34:30,424 - JUNIFER - INFO -      resolution: None
2025-05-09 12:34:30,424 - JUNIFER - INFO -      n_rois: 1000
2025-05-09 12:34:30,424 - JUNIFER - INFO -      yeo_networks: 7
2025-05-09 12:34:30,424 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-05-09 12:34:30,498 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v2/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-05-09 12:34:32,914 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-05-09 12:34:33,422 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp2v8qi6o4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_f455c352-2cd1-11f0-b407-763dc8eb2af0nf9adpw1/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp2v8qi6o4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_f455c352-2cd1-11f0-b407-763dc8eb2af0nf9adpw1/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmp2v8qi6o4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_f455c352-2cd1-11f0-b407-763dc8eb2af0nf9adpw1/parcellation_warped.nii.gz
2025-05-09 12:35:27,971 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-05-09 12:35:29,482 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp4mrr5g3q/test.sqlite (multiple output)>
2025-05-09 12:35:29,660 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2025-05-09 12:35:29,660 - JUNIFER - INFO - Computing VBM_GM
2025-05-09 12:35:29,660 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-05-09 12:35:29,660 - JUNIFER - INFO - Parcellation parameters:
2025-05-09 12:35:29,660 - JUNIFER - INFO -      resolution: None
2025-05-09 12:35:29,661 - JUNIFER - INFO -      n_rois: 1000
2025-05-09 12:35:29,661 - JUNIFER - INFO -      yeo_networks: 7
2025-05-09 12:35:29,661 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-05-09 12:35:29,734 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v2/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-05-09 12:35:32,169 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-05-09 12:35:32,678 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp2v8qi6o4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_17a3ebcc-2cd2-11f0-b407-763dc8eb2af0zma36y3x/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp2v8qi6o4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_17a3ebcc-2cd2-11f0-b407-763dc8eb2af0zma36y3x/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmp2v8qi6o4/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_17a3ebcc-2cd2-11f0-b407-763dc8eb2af0zma36y3x/parcellation_warped.nii.gz
2025-05-09 12:36:26,741 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-05-09 12:36:28,275 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp4mrr5g3q/test.sqlite (multiple output)>
2025-05-09 12:36:28,458 - JUNIFER - INFO - Marker collection fitting done
2025-05-09 12:36:28,465 - JUNIFER - INFO - Getting element sub-10
2025-05-09 12:36:28,465 - JUNIFER - INFO - Fitting pipeline
2025-05-09 12:36:28,465 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0011_MR1/mwrc1OAS1_0011_MR1_mpr_anon_fslswapdim_bet.nii.gz
2025-05-09 12:36:28,465 - JUNIFER - INFO - VBM_GM is of type NIFTI
2025-05-09 12:36:28,466 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2025-05-09 12:36:28,466 - JUNIFER - INFO - Computing VBM_GM
2025-05-09 12:36:28,467 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-05-09 12:36:28,467 - JUNIFER - INFO - Parcellation parameters:
2025-05-09 12:36:28,467 - JUNIFER - INFO -      resolution: None
2025-05-09 12:36:28,467 - JUNIFER - INFO -      n_rois: 1000
2025-05-09 12:36:28,467 - JUNIFER - INFO -      yeo_networks: 7
2025-05-09 12:36:28,467 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-05-09 12:36:28,541 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v2/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-05-09 12:36:30,962 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-05-09 12:36:31,474 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp7ktgswsc/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_3ab1a7da-2cd2-11f0-b407-763dc8eb2af0p0xjxwgq/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp7ktgswsc/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_3ab1a7da-2cd2-11f0-b407-763dc8eb2af0p0xjxwgq/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmp7ktgswsc/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_3ab1a7da-2cd2-11f0-b407-763dc8eb2af0p0xjxwgq/parcellation_warped.nii.gz
2025-05-09 12:37:25,564 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-05-09 12:37:27,096 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp4mrr5g3q/test.sqlite (multiple output)>
2025-05-09 12:37:27,271 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2025-05-09 12:37:27,271 - JUNIFER - INFO - Computing VBM_GM
2025-05-09 12:37:27,271 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-05-09 12:37:27,271 - JUNIFER - INFO - Parcellation parameters:
2025-05-09 12:37:27,271 - JUNIFER - INFO -      resolution: None
2025-05-09 12:37:27,271 - JUNIFER - INFO -      n_rois: 1000
2025-05-09 12:37:27,271 - JUNIFER - INFO -      yeo_networks: 7
2025-05-09 12:37:27,271 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-05-09 12:37:27,345 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v2/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-05-09 12:37:29,773 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-05-09 12:37:30,283 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp7ktgswsc/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_5dbf4ef8-2cd2-11f0-b407-763dc8eb2af0ja81xxbz/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp7ktgswsc/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_5dbf4ef8-2cd2-11f0-b407-763dc8eb2af0ja81xxbz/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmp7ktgswsc/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_5dbf4ef8-2cd2-11f0-b407-763dc8eb2af0ja81xxbz/parcellation_warped.nii.gz
2025-05-09 12:38:24,490 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-05-09 12:38:26,005 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp4mrr5g3q/test.sqlite (multiple output)>
2025-05-09 12:38:26,184 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2025-05-09 12:38:26,184 - JUNIFER - INFO - Computing VBM_GM
2025-05-09 12:38:26,184 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-05-09 12:38:26,184 - JUNIFER - INFO - Parcellation parameters:
2025-05-09 12:38:26,184 - JUNIFER - INFO -      resolution: None
2025-05-09 12:38:26,184 - JUNIFER - INFO -      n_rois: 1000
2025-05-09 12:38:26,184 - JUNIFER - INFO -      yeo_networks: 7
2025-05-09 12:38:26,184 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-05-09 12:38:26,259 - JUNIFER - INFO - Loading parcellation: /github/home/junifer_data/v2/parcellations/Schaefer2018/Yeo2011/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-05-09 12:38:28,672 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1)
2025-05-09 12:38:29,182 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp7ktgswsc/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_80dc073c-2cd2-11f0-b407-763dc8eb2af0pyidg0b2/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp7ktgswsc/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_80dc073c-2cd2-11f0-b407-763dc8eb2af0pyidg0b2/MNI152Lin_T1w.nii.gz -t /github/home/junifer_data/v2/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmp7ktgswsc/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_80dc073c-2cd2-11f0-b407-763dc8eb2af0pyidg0b2/parcellation_warped.nii.gz
2025-05-09 12:39:23,083 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-05-09 12:39:24,625 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmp4mrr5g3q/test.sqlite (multiple output)>
2025-05-09 12:39:24,818 - JUNIFER - INFO - Marker collection fitting done

import tempfile

import junifer.testing.registry  # noqa: F401
from junifer.api import run


datagrabber = {
    "kind": "OasisVBMTestingDataGrabber",
}

markers = [
    {
        "name": "Schaefer1000x7_TrimMean80",
        "kind": "ParcelAggregation",
        "parcellation": "Schaefer1000x7",
        "method": "trim_mean",
        "method_params": {"proportiontocut": 0.2},
    },
    {
        "name": "Schaefer1000x7_Mean",
        "kind": "ParcelAggregation",
        "parcellation": "Schaefer1000x7",
        "method": "mean",
    },
    {
        "name": "Schaefer1000x7_Std",
        "kind": "ParcelAggregation",
        "parcellation": "Schaefer1000x7",
        "method": "std",
    },
]

storage = {
    "kind": "SQLiteFeatureStorage",
}

with tempfile.TemporaryDirectory() as tmpdir:
    uri = f"{tmpdir}/test.sqlite"
    storage["uri"] = uri
    run(
        workdir="/tmp",
        datagrabber=datagrabber,
        markers=markers,
        storage=storage,
    )