8.3. UKB VBM GMD Extraction

Authors: Federico Raimondo

License: BSD 3 clause

2025-01-29 10:32:12,791 - JUNIFER - INFO - Registering OasisVBMTestingDataGrabber in datagrabber
2025-01-29 10:32:12,791 - JUNIFER - INFO - Registering SPMAuditoryTestingDataGrabber in datagrabber
2025-01-29 10:32:12,791 - JUNIFER - INFO - Registering PartlyCloudyTestingDataGrabber in datagrabber
2025-01-29 10:32:19,206 - JUNIFER - INFO - Registering ParcelAggregation in marker
2025-01-29 10:32:19,214 - JUNIFER - INFO - Registering SQLiteFeatureStorage in storage
2025-01-29 10:32:19,214 - JUNIFER - INFO - Validating Marker Collection
2025-01-29 10:32:19,214 - JUNIFER - INFO - DataGrabber output type: ['VBM_GM']
2025-01-29 10:32:19,214 - JUNIFER - INFO - Validating Data Reader:
2025-01-29 10:32:19,214 - JUNIFER - INFO - Data Reader output type: ['VBM_GM']
2025-01-29 10:32:19,214 - JUNIFER - INFO - Validating Marker: Schaefer1000x7_TrimMean80
2025-01-29 10:32:19,214 - JUNIFER - INFO - Marker output type: ['vector']
2025-01-29 10:32:19,215 - JUNIFER - INFO - Validating storage for Schaefer1000x7_TrimMean80
2025-01-29 10:32:19,215 - JUNIFER - INFO - Validating Marker: Schaefer1000x7_Mean
2025-01-29 10:32:19,215 - JUNIFER - INFO - Marker output type: ['vector']
2025-01-29 10:32:19,215 - JUNIFER - INFO - Validating storage for Schaefer1000x7_Mean
2025-01-29 10:32:19,215 - JUNIFER - INFO - Validating Marker: Schaefer1000x7_Std
2025-01-29 10:32:19,215 - JUNIFER - INFO - Marker output type: ['vector']
2025-01-29 10:32:19,215 - JUNIFER - INFO - Validating storage for Schaefer1000x7_Std

Added README.md to /github/home/nilearn_data


Dataset created in /github/home/nilearn_data/oasis1

Downloading data from https://www.nitrc.org/frs/download.php/6364/archive_dartel.tgz ...

Downloaded 177602560 of 905208634 bytes (19.6%,    4.1s remaining)
Downloaded 379412480 of 905208634 bytes (41.9%,    2.8s remaining)
Downloaded 583802880 of 905208634 bytes (64.5%,    1.7s remaining)
Downloaded 783196160 of 905208634 bytes (86.5%,    0.6s remaining) ...done. (5 seconds, 0 min)
Extracting data from /github/home/nilearn_data/oasis1/7088b0bf88f5650db26e32ec3afdd589/archive_dartel.tgz..... done.
2025-01-29 10:32:30,202 - JUNIFER - INFO - Getting element sub-01
2025-01-29 10:32:30,202 - JUNIFER - INFO - Fitting pipeline
2025-01-29 10:32:30,202 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0001_MR1/mwrc1OAS1_0001_MR1_mpr_anon_fslswapdim_bet.nii.gz
2025-01-29 10:32:30,202 - JUNIFER - INFO - VBM_GM is of type NIFTI
2025-01-29 10:32:30,203 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2025-01-29 10:32:30,203 - JUNIFER - INFO - Computing VBM_GM
2025-01-29 10:32:30,203 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-01-29 10:32:30,204 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2025-01-29 10:32:30,204 - JUNIFER - INFO - Parcellation parameters:
2025-01-29 10:32:30,204 - JUNIFER - INFO -      resolution: None
2025-01-29 10:32:30,204 - JUNIFER - INFO -      n_rois: 1000
2025-01-29 10:32:30,204 - JUNIFER - INFO -      yeo_networks: 7
2025-01-29 10:32:30,204 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-01-29 10:32:30,204 - JUNIFER - INFO - At least one of the parcellation files are missing. Fetching using nilearn.

Added README.md to /github/home/junifer/data/parcellations


Dataset created in /github/home/junifer/data/parcellations/schaefer_2018

Downloading data from https://raw.githubusercontent.com/ThomasYeoLab/CBIG/v0.14.3-Update_Yeo2011_Schaefer2018_labelname/stable_projects/brain_parcellation/Schaefer2018_LocalGlobal/Parcellations/MNI/Schaefer2018_1000Parcels_7Networks_order.txt ...
 ...done. (0 seconds, 0 min)
Downloading data from https://raw.githubusercontent.com/ThomasYeoLab/CBIG/v0.14.3-Update_Yeo2011_Schaefer2018_labelname/stable_projects/brain_parcellation/Schaefer2018_LocalGlobal/Parcellations/MNI/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz ...
 ...done. (0 seconds, 0 min)
2025-01-29 10:32:30,621 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-01-29 10:32:30,901 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5
2025-01-29 10:32:32,005 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1
Downloading https://templateflow.s3.amazonaws.com/tpl-MNI152Lin/tpl-MNI152Lin_res-01_T1w.nii.gz

  0%|          | 0.00/10.7M [00:00<?, ?B/s]
 67%|██████▋   | 7.10M/10.7M [00:00<00:00, 71.0MB/s]
100%|██████████| 10.7M/10.7M [00:00<00:00, 79.0MB/s]
2025-01-29 10:32:32,761 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmptlro35id/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_5809dc16-de2c-11ef-acef-0242ac120002_1hjzpqr/prewarp_parcellation.nii.gz -r /tmp/junifer/tmptlro35id/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_5809dc16-de2c-11ef-acef-0242ac120002_1hjzpqr/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmptlro35id/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_5809dc16-de2c-11ef-acef-0242ac120002_1hjzpqr/parcellation_warped.nii.gz
2025-01-29 10:33:25,249 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-01-29 10:33:26,722 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpm2of46x2/test.sqlite (multiple output)>
2025-01-29 10:33:26,898 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2025-01-29 10:33:26,899 - JUNIFER - INFO - Computing VBM_GM
2025-01-29 10:33:26,899 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-01-29 10:33:26,899 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2025-01-29 10:33:26,899 - JUNIFER - INFO - Parcellation parameters:
2025-01-29 10:33:26,899 - JUNIFER - INFO -      resolution: None
2025-01-29 10:33:26,899 - JUNIFER - INFO -      n_rois: 1000
2025-01-29 10:33:26,899 - JUNIFER - INFO -      yeo_networks: 7
2025-01-29 10:33:26,899 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-01-29 10:33:26,902 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-01-29 10:33:27,181 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5
2025-01-29 10:33:28,266 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1
2025-01-29 10:33:28,776 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmptlro35id/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_7995672e-de2c-11ef-acef-0242ac1200026_jczkgr/prewarp_parcellation.nii.gz -r /tmp/junifer/tmptlro35id/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_7995672e-de2c-11ef-acef-0242ac1200026_jczkgr/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmptlro35id/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_7995672e-de2c-11ef-acef-0242ac1200026_jczkgr/parcellation_warped.nii.gz
2025-01-29 10:34:21,686 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-01-29 10:34:23,135 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpm2of46x2/test.sqlite (multiple output)>
2025-01-29 10:34:23,314 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2025-01-29 10:34:23,315 - JUNIFER - INFO - Computing VBM_GM
2025-01-29 10:34:23,315 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-01-29 10:34:23,315 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2025-01-29 10:34:23,315 - JUNIFER - INFO - Parcellation parameters:
2025-01-29 10:34:23,315 - JUNIFER - INFO -      resolution: None
2025-01-29 10:34:23,315 - JUNIFER - INFO -      n_rois: 1000
2025-01-29 10:34:23,315 - JUNIFER - INFO -      yeo_networks: 7
2025-01-29 10:34:23,315 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-01-29 10:34:23,317 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-01-29 10:34:23,609 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5
2025-01-29 10:34:24,744 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1
2025-01-29 10:34:25,252 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmptlro35id/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_9b37b6f2-de2c-11ef-acef-0242ac120002szglr1sy/prewarp_parcellation.nii.gz -r /tmp/junifer/tmptlro35id/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_9b37b6f2-de2c-11ef-acef-0242ac120002szglr1sy/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmptlro35id/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_9b37b6f2-de2c-11ef-acef-0242ac120002szglr1sy/parcellation_warped.nii.gz
2025-01-29 10:35:18,491 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-01-29 10:35:19,961 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpm2of46x2/test.sqlite (multiple output)>
2025-01-29 10:35:20,140 - JUNIFER - INFO - Marker collection fitting done
2025-01-29 10:35:20,147 - JUNIFER - INFO - Getting element sub-02
2025-01-29 10:35:20,147 - JUNIFER - INFO - Fitting pipeline
2025-01-29 10:35:20,147 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0002_MR1/mwrc1OAS1_0002_MR1_mpr_anon_fslswapdim_bet.nii.gz
2025-01-29 10:35:20,147 - JUNIFER - INFO - VBM_GM is of type NIFTI
2025-01-29 10:35:20,148 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2025-01-29 10:35:20,148 - JUNIFER - INFO - Computing VBM_GM
2025-01-29 10:35:20,148 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-01-29 10:35:20,149 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2025-01-29 10:35:20,149 - JUNIFER - INFO - Parcellation parameters:
2025-01-29 10:35:20,149 - JUNIFER - INFO -      resolution: None
2025-01-29 10:35:20,149 - JUNIFER - INFO -      n_rois: 1000
2025-01-29 10:35:20,149 - JUNIFER - INFO -      yeo_networks: 7
2025-01-29 10:35:20,149 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-01-29 10:35:20,151 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-01-29 10:35:20,428 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5
2025-01-29 10:35:21,526 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1
2025-01-29 10:35:22,034 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpoy90shmc/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_bd15a2e8-de2c-11ef-acef-0242ac120002qgrwdmg3/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpoy90shmc/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_bd15a2e8-de2c-11ef-acef-0242ac120002qgrwdmg3/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpoy90shmc/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_bd15a2e8-de2c-11ef-acef-0242ac120002qgrwdmg3/parcellation_warped.nii.gz
2025-01-29 10:36:14,913 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-01-29 10:36:16,445 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpm2of46x2/test.sqlite (multiple output)>
2025-01-29 10:36:16,621 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2025-01-29 10:36:16,621 - JUNIFER - INFO - Computing VBM_GM
2025-01-29 10:36:16,621 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-01-29 10:36:16,621 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2025-01-29 10:36:16,621 - JUNIFER - INFO - Parcellation parameters:
2025-01-29 10:36:16,621 - JUNIFER - INFO -      resolution: None
2025-01-29 10:36:16,621 - JUNIFER - INFO -      n_rois: 1000
2025-01-29 10:36:16,622 - JUNIFER - INFO -      yeo_networks: 7
2025-01-29 10:36:16,622 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-01-29 10:36:16,624 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-01-29 10:36:16,900 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5
2025-01-29 10:36:17,986 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1
2025-01-29 10:36:18,494 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpoy90shmc/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_debeaf16-de2c-11ef-acef-0242ac120002focu1hlm/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpoy90shmc/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_debeaf16-de2c-11ef-acef-0242ac120002focu1hlm/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpoy90shmc/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_debeaf16-de2c-11ef-acef-0242ac120002focu1hlm/parcellation_warped.nii.gz
2025-01-29 10:37:11,355 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-01-29 10:37:12,837 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpm2of46x2/test.sqlite (multiple output)>
2025-01-29 10:37:13,015 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2025-01-29 10:37:13,015 - JUNIFER - INFO - Computing VBM_GM
2025-01-29 10:37:13,016 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-01-29 10:37:13,016 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2025-01-29 10:37:13,016 - JUNIFER - INFO - Parcellation parameters:
2025-01-29 10:37:13,016 - JUNIFER - INFO -      resolution: None
2025-01-29 10:37:13,016 - JUNIFER - INFO -      n_rois: 1000
2025-01-29 10:37:13,016 - JUNIFER - INFO -      yeo_networks: 7
2025-01-29 10:37:13,016 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-01-29 10:37:13,018 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-01-29 10:37:13,295 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5
2025-01-29 10:37:14,396 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1
2025-01-29 10:37:14,907 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpoy90shmc/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_005be3dc-de2d-11ef-acef-0242ac120002dqfu18s6/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpoy90shmc/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_005be3dc-de2d-11ef-acef-0242ac120002dqfu18s6/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpoy90shmc/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_005be3dc-de2d-11ef-acef-0242ac120002dqfu18s6/parcellation_warped.nii.gz
2025-01-29 10:38:08,745 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-01-29 10:38:10,231 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpm2of46x2/test.sqlite (multiple output)>
2025-01-29 10:38:10,412 - JUNIFER - INFO - Marker collection fitting done
2025-01-29 10:38:10,418 - JUNIFER - INFO - Getting element sub-03
2025-01-29 10:38:10,419 - JUNIFER - INFO - Fitting pipeline
2025-01-29 10:38:10,419 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0003_MR1/mwrc1OAS1_0003_MR1_mpr_anon_fslswapdim_bet.nii.gz
2025-01-29 10:38:10,419 - JUNIFER - INFO - VBM_GM is of type NIFTI
2025-01-29 10:38:10,420 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2025-01-29 10:38:10,420 - JUNIFER - INFO - Computing VBM_GM
2025-01-29 10:38:10,420 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-01-29 10:38:10,420 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2025-01-29 10:38:10,420 - JUNIFER - INFO - Parcellation parameters:
2025-01-29 10:38:10,420 - JUNIFER - INFO -      resolution: None
2025-01-29 10:38:10,420 - JUNIFER - INFO -      n_rois: 1000
2025-01-29 10:38:10,420 - JUNIFER - INFO -      yeo_networks: 7
2025-01-29 10:38:10,420 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-01-29 10:38:10,422 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-01-29 10:38:10,701 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5
2025-01-29 10:38:11,794 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1
2025-01-29 10:38:12,300 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmplklp7dys/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_22934fe4-de2d-11ef-acef-0242ac120002e7yue2wj/prewarp_parcellation.nii.gz -r /tmp/junifer/tmplklp7dys/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_22934fe4-de2d-11ef-acef-0242ac120002e7yue2wj/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmplklp7dys/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_22934fe4-de2d-11ef-acef-0242ac120002e7yue2wj/parcellation_warped.nii.gz
2025-01-29 10:39:05,641 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-01-29 10:39:07,119 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpm2of46x2/test.sqlite (multiple output)>
2025-01-29 10:39:07,292 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2025-01-29 10:39:07,292 - JUNIFER - INFO - Computing VBM_GM
2025-01-29 10:39:07,293 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-01-29 10:39:07,293 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2025-01-29 10:39:07,293 - JUNIFER - INFO - Parcellation parameters:
2025-01-29 10:39:07,293 - JUNIFER - INFO -      resolution: None
2025-01-29 10:39:07,293 - JUNIFER - INFO -      n_rois: 1000
2025-01-29 10:39:07,293 - JUNIFER - INFO -      yeo_networks: 7
2025-01-29 10:39:07,293 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-01-29 10:39:07,295 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-01-29 10:39:07,572 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5
2025-01-29 10:39:08,678 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1
2025-01-29 10:39:09,191 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmplklp7dys/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_44791c56-de2d-11ef-acef-0242ac120002639am0l5/prewarp_parcellation.nii.gz -r /tmp/junifer/tmplklp7dys/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_44791c56-de2d-11ef-acef-0242ac120002639am0l5/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmplklp7dys/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_44791c56-de2d-11ef-acef-0242ac120002639am0l5/parcellation_warped.nii.gz
2025-01-29 10:40:02,464 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-01-29 10:40:03,925 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpm2of46x2/test.sqlite (multiple output)>
2025-01-29 10:40:04,099 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2025-01-29 10:40:04,100 - JUNIFER - INFO - Computing VBM_GM
2025-01-29 10:40:04,100 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-01-29 10:40:04,100 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2025-01-29 10:40:04,100 - JUNIFER - INFO - Parcellation parameters:
2025-01-29 10:40:04,100 - JUNIFER - INFO -      resolution: None
2025-01-29 10:40:04,100 - JUNIFER - INFO -      n_rois: 1000
2025-01-29 10:40:04,100 - JUNIFER - INFO -      yeo_networks: 7
2025-01-29 10:40:04,100 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-01-29 10:40:04,102 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-01-29 10:40:04,378 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5
2025-01-29 10:40:05,499 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1
2025-01-29 10:40:06,008 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmplklp7dys/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_66551d7a-de2d-11ef-acef-0242ac120002668b8c_d/prewarp_parcellation.nii.gz -r /tmp/junifer/tmplklp7dys/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_66551d7a-de2d-11ef-acef-0242ac120002668b8c_d/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmplklp7dys/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_66551d7a-de2d-11ef-acef-0242ac120002668b8c_d/parcellation_warped.nii.gz
2025-01-29 10:40:59,415 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-01-29 10:41:00,925 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpm2of46x2/test.sqlite (multiple output)>
2025-01-29 10:41:01,107 - JUNIFER - INFO - Marker collection fitting done
2025-01-29 10:41:01,114 - JUNIFER - INFO - Getting element sub-04
2025-01-29 10:41:01,114 - JUNIFER - INFO - Fitting pipeline
2025-01-29 10:41:01,115 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0004_MR1/mwrc1OAS1_0004_MR1_mpr_anon_fslswapdim_bet.nii.gz
2025-01-29 10:41:01,115 - JUNIFER - INFO - VBM_GM is of type NIFTI
2025-01-29 10:41:01,116 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2025-01-29 10:41:01,116 - JUNIFER - INFO - Computing VBM_GM
2025-01-29 10:41:01,116 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-01-29 10:41:01,116 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2025-01-29 10:41:01,116 - JUNIFER - INFO - Parcellation parameters:
2025-01-29 10:41:01,116 - JUNIFER - INFO -      resolution: None
2025-01-29 10:41:01,116 - JUNIFER - INFO -      n_rois: 1000
2025-01-29 10:41:01,116 - JUNIFER - INFO -      yeo_networks: 7
2025-01-29 10:41:01,116 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-01-29 10:41:01,118 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-01-29 10:41:01,397 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5
2025-01-29 10:41:02,508 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1
2025-01-29 10:41:03,018 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpnrm4_r63/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_88512234-de2d-11ef-acef-0242ac1200024runvcfx/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpnrm4_r63/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_88512234-de2d-11ef-acef-0242ac1200024runvcfx/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpnrm4_r63/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_88512234-de2d-11ef-acef-0242ac1200024runvcfx/parcellation_warped.nii.gz
2025-01-29 10:41:56,358 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-01-29 10:41:57,847 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpm2of46x2/test.sqlite (multiple output)>
2025-01-29 10:41:58,017 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2025-01-29 10:41:58,018 - JUNIFER - INFO - Computing VBM_GM
2025-01-29 10:41:58,018 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-01-29 10:41:58,018 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2025-01-29 10:41:58,018 - JUNIFER - INFO - Parcellation parameters:
2025-01-29 10:41:58,018 - JUNIFER - INFO -      resolution: None
2025-01-29 10:41:58,018 - JUNIFER - INFO -      n_rois: 1000
2025-01-29 10:41:58,018 - JUNIFER - INFO -      yeo_networks: 7
2025-01-29 10:41:58,018 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-01-29 10:41:58,020 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-01-29 10:41:58,297 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5
2025-01-29 10:41:59,394 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1
2025-01-29 10:41:59,904 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpnrm4_r63/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_aa3bb58a-de2d-11ef-acef-0242ac120002y0z8yh1v/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpnrm4_r63/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_aa3bb58a-de2d-11ef-acef-0242ac120002y0z8yh1v/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpnrm4_r63/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_aa3bb58a-de2d-11ef-acef-0242ac120002y0z8yh1v/parcellation_warped.nii.gz
2025-01-29 10:42:53,288 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-01-29 10:42:54,795 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpm2of46x2/test.sqlite (multiple output)>
2025-01-29 10:42:54,968 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2025-01-29 10:42:54,968 - JUNIFER - INFO - Computing VBM_GM
2025-01-29 10:42:54,968 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-01-29 10:42:54,968 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2025-01-29 10:42:54,968 - JUNIFER - INFO - Parcellation parameters:
2025-01-29 10:42:54,968 - JUNIFER - INFO -      resolution: None
2025-01-29 10:42:54,968 - JUNIFER - INFO -      n_rois: 1000
2025-01-29 10:42:54,968 - JUNIFER - INFO -      yeo_networks: 7
2025-01-29 10:42:54,968 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-01-29 10:42:54,971 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-01-29 10:42:55,247 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5
2025-01-29 10:42:56,343 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1
2025-01-29 10:42:56,850 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpnrm4_r63/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_cc2d87cc-de2d-11ef-acef-0242ac120002ephkfsux/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpnrm4_r63/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_cc2d87cc-de2d-11ef-acef-0242ac120002ephkfsux/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpnrm4_r63/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_cc2d87cc-de2d-11ef-acef-0242ac120002ephkfsux/parcellation_warped.nii.gz
2025-01-29 10:43:50,519 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-01-29 10:43:51,987 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpm2of46x2/test.sqlite (multiple output)>
2025-01-29 10:43:52,164 - JUNIFER - INFO - Marker collection fitting done
2025-01-29 10:43:52,171 - JUNIFER - INFO - Getting element sub-05
2025-01-29 10:43:52,171 - JUNIFER - INFO - Fitting pipeline
2025-01-29 10:43:52,171 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0005_MR1/mwrc1OAS1_0005_MR1_mpr_anon_fslswapdim_bet.nii.gz
2025-01-29 10:43:52,171 - JUNIFER - INFO - VBM_GM is of type NIFTI
2025-01-29 10:43:52,172 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2025-01-29 10:43:52,172 - JUNIFER - INFO - Computing VBM_GM
2025-01-29 10:43:52,172 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-01-29 10:43:52,172 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2025-01-29 10:43:52,173 - JUNIFER - INFO - Parcellation parameters:
2025-01-29 10:43:52,173 - JUNIFER - INFO -      resolution: None
2025-01-29 10:43:52,173 - JUNIFER - INFO -      n_rois: 1000
2025-01-29 10:43:52,173 - JUNIFER - INFO -      yeo_networks: 7
2025-01-29 10:43:52,173 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-01-29 10:43:52,175 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-01-29 10:43:52,454 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5
2025-01-29 10:43:53,537 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1
2025-01-29 10:43:54,046 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpvr2pamuq/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_ee46acda-de2d-11ef-acef-0242ac120002911og_lf/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpvr2pamuq/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_ee46acda-de2d-11ef-acef-0242ac120002911og_lf/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpvr2pamuq/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_ee46acda-de2d-11ef-acef-0242ac120002911og_lf/parcellation_warped.nii.gz
2025-01-29 10:44:47,572 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-01-29 10:44:49,081 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpm2of46x2/test.sqlite (multiple output)>
2025-01-29 10:44:49,255 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2025-01-29 10:44:49,255 - JUNIFER - INFO - Computing VBM_GM
2025-01-29 10:44:49,255 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-01-29 10:44:49,255 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2025-01-29 10:44:49,255 - JUNIFER - INFO - Parcellation parameters:
2025-01-29 10:44:49,255 - JUNIFER - INFO -      resolution: None
2025-01-29 10:44:49,255 - JUNIFER - INFO -      n_rois: 1000
2025-01-29 10:44:49,255 - JUNIFER - INFO -      yeo_networks: 7
2025-01-29 10:44:49,255 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-01-29 10:44:49,257 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-01-29 10:44:49,535 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5
2025-01-29 10:44:50,616 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1
2025-01-29 10:44:51,125 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpvr2pamuq/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_104c7300-de2e-11ef-acef-0242ac120002e89msy8d/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpvr2pamuq/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_104c7300-de2e-11ef-acef-0242ac120002e89msy8d/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpvr2pamuq/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_104c7300-de2e-11ef-acef-0242ac120002e89msy8d/parcellation_warped.nii.gz
2025-01-29 10:45:45,324 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-01-29 10:45:46,802 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpm2of46x2/test.sqlite (multiple output)>
2025-01-29 10:45:46,978 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2025-01-29 10:45:46,979 - JUNIFER - INFO - Computing VBM_GM
2025-01-29 10:45:46,979 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-01-29 10:45:46,979 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2025-01-29 10:45:46,979 - JUNIFER - INFO - Parcellation parameters:
2025-01-29 10:45:46,979 - JUNIFER - INFO -      resolution: None
2025-01-29 10:45:46,979 - JUNIFER - INFO -      n_rois: 1000
2025-01-29 10:45:46,979 - JUNIFER - INFO -      yeo_networks: 7
2025-01-29 10:45:46,979 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-01-29 10:45:46,981 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-01-29 10:45:47,259 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5
2025-01-29 10:45:48,338 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1
2025-01-29 10:45:48,846 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpvr2pamuq/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_32b47320-de2e-11ef-acef-0242ac1200024shg7iau/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpvr2pamuq/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_32b47320-de2e-11ef-acef-0242ac1200024shg7iau/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpvr2pamuq/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_32b47320-de2e-11ef-acef-0242ac1200024shg7iau/parcellation_warped.nii.gz
2025-01-29 10:46:42,774 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-01-29 10:46:44,224 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpm2of46x2/test.sqlite (multiple output)>
2025-01-29 10:46:44,404 - JUNIFER - INFO - Marker collection fitting done
2025-01-29 10:46:44,411 - JUNIFER - INFO - Getting element sub-06
2025-01-29 10:46:44,411 - JUNIFER - INFO - Fitting pipeline
2025-01-29 10:46:44,411 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0006_MR1/mwrc1OAS1_0006_MR1_mpr_anon_fslswapdim_bet.nii.gz
2025-01-29 10:46:44,411 - JUNIFER - INFO - VBM_GM is of type NIFTI
2025-01-29 10:46:44,412 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2025-01-29 10:46:44,412 - JUNIFER - INFO - Computing VBM_GM
2025-01-29 10:46:44,413 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-01-29 10:46:44,413 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2025-01-29 10:46:44,413 - JUNIFER - INFO - Parcellation parameters:
2025-01-29 10:46:44,413 - JUNIFER - INFO -      resolution: None
2025-01-29 10:46:44,413 - JUNIFER - INFO -      n_rois: 1000
2025-01-29 10:46:44,413 - JUNIFER - INFO -      yeo_networks: 7
2025-01-29 10:46:44,413 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-01-29 10:46:44,415 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-01-29 10:46:44,692 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5
2025-01-29 10:46:45,754 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1
2025-01-29 10:46:46,263 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpsql2znyr/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_54f02240-de2e-11ef-acef-0242ac120002vugftyd3/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpsql2znyr/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_54f02240-de2e-11ef-acef-0242ac120002vugftyd3/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpsql2znyr/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_54f02240-de2e-11ef-acef-0242ac120002vugftyd3/parcellation_warped.nii.gz
2025-01-29 10:47:40,121 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-01-29 10:47:41,671 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpm2of46x2/test.sqlite (multiple output)>
2025-01-29 10:47:41,844 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2025-01-29 10:47:41,844 - JUNIFER - INFO - Computing VBM_GM
2025-01-29 10:47:41,844 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-01-29 10:47:41,844 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2025-01-29 10:47:41,844 - JUNIFER - INFO - Parcellation parameters:
2025-01-29 10:47:41,844 - JUNIFER - INFO -      resolution: None
2025-01-29 10:47:41,844 - JUNIFER - INFO -      n_rois: 1000
2025-01-29 10:47:41,845 - JUNIFER - INFO -      yeo_networks: 7
2025-01-29 10:47:41,845 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-01-29 10:47:41,847 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-01-29 10:47:42,124 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5
2025-01-29 10:47:43,202 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1
2025-01-29 10:47:43,710 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpsql2znyr/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_772b8b24-de2e-11ef-acef-0242ac120002tcbcruog/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpsql2znyr/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_772b8b24-de2e-11ef-acef-0242ac120002tcbcruog/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpsql2znyr/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_772b8b24-de2e-11ef-acef-0242ac120002tcbcruog/parcellation_warped.nii.gz
2025-01-29 10:48:36,625 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-01-29 10:48:38,064 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpm2of46x2/test.sqlite (multiple output)>
2025-01-29 10:48:38,246 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2025-01-29 10:48:38,246 - JUNIFER - INFO - Computing VBM_GM
2025-01-29 10:48:38,246 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-01-29 10:48:38,246 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2025-01-29 10:48:38,246 - JUNIFER - INFO - Parcellation parameters:
2025-01-29 10:48:38,246 - JUNIFER - INFO -      resolution: None
2025-01-29 10:48:38,246 - JUNIFER - INFO -      n_rois: 1000
2025-01-29 10:48:38,246 - JUNIFER - INFO -      yeo_networks: 7
2025-01-29 10:48:38,246 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-01-29 10:48:38,248 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-01-29 10:48:38,525 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5
2025-01-29 10:48:39,579 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1
2025-01-29 10:48:40,087 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpsql2znyr/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_98c99564-de2e-11ef-acef-0242ac120002_ezj4b12/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpsql2znyr/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_98c99564-de2e-11ef-acef-0242ac120002_ezj4b12/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpsql2znyr/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_98c99564-de2e-11ef-acef-0242ac120002_ezj4b12/parcellation_warped.nii.gz
2025-01-29 10:49:33,624 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-01-29 10:49:35,091 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpm2of46x2/test.sqlite (multiple output)>
2025-01-29 10:49:35,269 - JUNIFER - INFO - Marker collection fitting done
2025-01-29 10:49:35,276 - JUNIFER - INFO - Getting element sub-07
2025-01-29 10:49:35,276 - JUNIFER - INFO - Fitting pipeline
2025-01-29 10:49:35,276 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0007_MR1/mwrc1OAS1_0007_MR1_mpr_anon_fslswapdim_bet.nii.gz
2025-01-29 10:49:35,276 - JUNIFER - INFO - VBM_GM is of type NIFTI
2025-01-29 10:49:35,277 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2025-01-29 10:49:35,277 - JUNIFER - INFO - Computing VBM_GM
2025-01-29 10:49:35,277 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-01-29 10:49:35,277 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2025-01-29 10:49:35,277 - JUNIFER - INFO - Parcellation parameters:
2025-01-29 10:49:35,277 - JUNIFER - INFO -      resolution: None
2025-01-29 10:49:35,277 - JUNIFER - INFO -      n_rois: 1000
2025-01-29 10:49:35,277 - JUNIFER - INFO -      yeo_networks: 7
2025-01-29 10:49:35,277 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-01-29 10:49:35,279 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-01-29 10:49:35,555 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5
2025-01-29 10:49:36,620 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1
2025-01-29 10:49:37,129 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpctagf8ob/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_bac7c80c-de2e-11ef-acef-0242ac120002zm2efthc/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpctagf8ob/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_bac7c80c-de2e-11ef-acef-0242ac120002zm2efthc/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpctagf8ob/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_bac7c80c-de2e-11ef-acef-0242ac120002zm2efthc/parcellation_warped.nii.gz
2025-01-29 10:50:29,371 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-01-29 10:50:30,867 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpm2of46x2/test.sqlite (multiple output)>
2025-01-29 10:50:31,039 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2025-01-29 10:50:31,039 - JUNIFER - INFO - Computing VBM_GM
2025-01-29 10:50:31,039 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-01-29 10:50:31,039 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2025-01-29 10:50:31,039 - JUNIFER - INFO - Parcellation parameters:
2025-01-29 10:50:31,039 - JUNIFER - INFO -      resolution: None
2025-01-29 10:50:31,039 - JUNIFER - INFO -      n_rois: 1000
2025-01-29 10:50:31,039 - JUNIFER - INFO -      yeo_networks: 7
2025-01-29 10:50:31,040 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-01-29 10:50:31,042 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-01-29 10:50:31,320 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5
2025-01-29 10:50:32,417 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1
2025-01-29 10:50:32,926 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpctagf8ob/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_dc04c6b4-de2e-11ef-acef-0242ac1200020sfr0tp4/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpctagf8ob/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_dc04c6b4-de2e-11ef-acef-0242ac1200020sfr0tp4/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpctagf8ob/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_dc04c6b4-de2e-11ef-acef-0242ac1200020sfr0tp4/parcellation_warped.nii.gz
2025-01-29 10:51:26,725 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-01-29 10:51:28,157 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpm2of46x2/test.sqlite (multiple output)>
2025-01-29 10:51:28,332 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2025-01-29 10:51:28,332 - JUNIFER - INFO - Computing VBM_GM
2025-01-29 10:51:28,332 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-01-29 10:51:28,332 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2025-01-29 10:51:28,332 - JUNIFER - INFO - Parcellation parameters:
2025-01-29 10:51:28,332 - JUNIFER - INFO -      resolution: None
2025-01-29 10:51:28,332 - JUNIFER - INFO -      n_rois: 1000
2025-01-29 10:51:28,332 - JUNIFER - INFO -      yeo_networks: 7
2025-01-29 10:51:28,332 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-01-29 10:51:28,334 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-01-29 10:51:28,610 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5
2025-01-29 10:51:29,653 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1
2025-01-29 10:51:30,162 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpctagf8ob/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_fe2a921e-de2e-11ef-acef-0242ac1200028igzl0lj/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpctagf8ob/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_fe2a921e-de2e-11ef-acef-0242ac1200028igzl0lj/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpctagf8ob/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_fe2a921e-de2e-11ef-acef-0242ac1200028igzl0lj/parcellation_warped.nii.gz
2025-01-29 10:52:23,832 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-01-29 10:52:25,303 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpm2of46x2/test.sqlite (multiple output)>
2025-01-29 10:52:25,477 - JUNIFER - INFO - Marker collection fitting done
2025-01-29 10:52:25,484 - JUNIFER - INFO - Getting element sub-08
2025-01-29 10:52:25,484 - JUNIFER - INFO - Fitting pipeline
2025-01-29 10:52:25,484 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0009_MR1/mwrc1OAS1_0009_MR1_mpr_anon_fslswapdim_bet.nii.gz
2025-01-29 10:52:25,484 - JUNIFER - INFO - VBM_GM is of type NIFTI
2025-01-29 10:52:25,485 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2025-01-29 10:52:25,485 - JUNIFER - INFO - Computing VBM_GM
2025-01-29 10:52:25,485 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-01-29 10:52:25,485 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2025-01-29 10:52:25,485 - JUNIFER - INFO - Parcellation parameters:
2025-01-29 10:52:25,485 - JUNIFER - INFO -      resolution: None
2025-01-29 10:52:25,485 - JUNIFER - INFO -      n_rois: 1000
2025-01-29 10:52:25,485 - JUNIFER - INFO -      yeo_networks: 7
2025-01-29 10:52:25,485 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-01-29 10:52:25,488 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-01-29 10:52:25,766 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5
2025-01-29 10:52:26,833 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1
2025-01-29 10:52:27,344 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpyoj9kq16/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_203bee0c-de2f-11ef-acef-0242ac120002c5kin7r7/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpyoj9kq16/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_203bee0c-de2f-11ef-acef-0242ac120002c5kin7r7/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpyoj9kq16/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_203bee0c-de2f-11ef-acef-0242ac120002c5kin7r7/parcellation_warped.nii.gz
2025-01-29 10:53:21,355 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-01-29 10:53:22,847 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpm2of46x2/test.sqlite (multiple output)>
2025-01-29 10:53:23,019 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2025-01-29 10:53:23,019 - JUNIFER - INFO - Computing VBM_GM
2025-01-29 10:53:23,019 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-01-29 10:53:23,019 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2025-01-29 10:53:23,019 - JUNIFER - INFO - Parcellation parameters:
2025-01-29 10:53:23,019 - JUNIFER - INFO -      resolution: None
2025-01-29 10:53:23,020 - JUNIFER - INFO -      n_rois: 1000
2025-01-29 10:53:23,020 - JUNIFER - INFO -      yeo_networks: 7
2025-01-29 10:53:23,020 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-01-29 10:53:23,022 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-01-29 10:53:23,299 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5
2025-01-29 10:53:24,351 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1
2025-01-29 10:53:24,860 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpyoj9kq16/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_4286ba78-de2f-11ef-acef-0242ac120002vgti19ra/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpyoj9kq16/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_4286ba78-de2f-11ef-acef-0242ac120002vgti19ra/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpyoj9kq16/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_4286ba78-de2f-11ef-acef-0242ac120002vgti19ra/parcellation_warped.nii.gz
2025-01-29 10:54:18,298 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-01-29 10:54:19,751 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpm2of46x2/test.sqlite (multiple output)>
2025-01-29 10:54:19,921 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2025-01-29 10:54:19,921 - JUNIFER - INFO - Computing VBM_GM
2025-01-29 10:54:19,921 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-01-29 10:54:19,922 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2025-01-29 10:54:19,922 - JUNIFER - INFO - Parcellation parameters:
2025-01-29 10:54:19,922 - JUNIFER - INFO -      resolution: None
2025-01-29 10:54:19,922 - JUNIFER - INFO -      n_rois: 1000
2025-01-29 10:54:19,922 - JUNIFER - INFO -      yeo_networks: 7
2025-01-29 10:54:19,922 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-01-29 10:54:19,924 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-01-29 10:54:20,201 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5
2025-01-29 10:54:21,267 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1
2025-01-29 10:54:21,775 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpyoj9kq16/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_64714e3c-de2f-11ef-acef-0242ac120002mffgq7en/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpyoj9kq16/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_64714e3c-de2f-11ef-acef-0242ac120002mffgq7en/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpyoj9kq16/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_64714e3c-de2f-11ef-acef-0242ac120002mffgq7en/parcellation_warped.nii.gz
2025-01-29 10:55:15,230 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-01-29 10:55:16,722 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpm2of46x2/test.sqlite (multiple output)>
2025-01-29 10:55:16,900 - JUNIFER - INFO - Marker collection fitting done
2025-01-29 10:55:16,907 - JUNIFER - INFO - Getting element sub-09
2025-01-29 10:55:16,907 - JUNIFER - INFO - Fitting pipeline
2025-01-29 10:55:16,907 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0010_MR1/mwrc1OAS1_0010_MR1_mpr_anon_fslswapdim_bet.nii.gz
2025-01-29 10:55:16,907 - JUNIFER - INFO - VBM_GM is of type NIFTI
2025-01-29 10:55:16,908 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2025-01-29 10:55:16,908 - JUNIFER - INFO - Computing VBM_GM
2025-01-29 10:55:16,908 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-01-29 10:55:16,908 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2025-01-29 10:55:16,908 - JUNIFER - INFO - Parcellation parameters:
2025-01-29 10:55:16,908 - JUNIFER - INFO -      resolution: None
2025-01-29 10:55:16,908 - JUNIFER - INFO -      n_rois: 1000
2025-01-29 10:55:16,908 - JUNIFER - INFO -      yeo_networks: 7
2025-01-29 10:55:16,908 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-01-29 10:55:16,911 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-01-29 10:55:17,187 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5
2025-01-29 10:55:18,259 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1
2025-01-29 10:55:18,769 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpx5df15lu/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_8668b728-de2f-11ef-acef-0242ac12000228xe9652/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpx5df15lu/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_8668b728-de2f-11ef-acef-0242ac12000228xe9652/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpx5df15lu/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_8668b728-de2f-11ef-acef-0242ac12000228xe9652/parcellation_warped.nii.gz
2025-01-29 10:56:12,527 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-01-29 10:56:14,029 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpm2of46x2/test.sqlite (multiple output)>
2025-01-29 10:56:14,197 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2025-01-29 10:56:14,197 - JUNIFER - INFO - Computing VBM_GM
2025-01-29 10:56:14,197 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-01-29 10:56:14,197 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2025-01-29 10:56:14,197 - JUNIFER - INFO - Parcellation parameters:
2025-01-29 10:56:14,197 - JUNIFER - INFO -      resolution: None
2025-01-29 10:56:14,197 - JUNIFER - INFO -      n_rois: 1000
2025-01-29 10:56:14,197 - JUNIFER - INFO -      yeo_networks: 7
2025-01-29 10:56:14,197 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-01-29 10:56:14,200 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-01-29 10:56:14,475 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5
2025-01-29 10:56:15,545 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1
2025-01-29 10:56:16,054 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpx5df15lu/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a88e26bc-de2f-11ef-acef-0242ac120002vyebvh75/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpx5df15lu/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a88e26bc-de2f-11ef-acef-0242ac120002vyebvh75/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpx5df15lu/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a88e26bc-de2f-11ef-acef-0242ac120002vyebvh75/parcellation_warped.nii.gz
2025-01-29 10:57:09,430 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-01-29 10:57:10,930 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpm2of46x2/test.sqlite (multiple output)>
2025-01-29 10:57:11,108 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2025-01-29 10:57:11,108 - JUNIFER - INFO - Computing VBM_GM
2025-01-29 10:57:11,108 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-01-29 10:57:11,108 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2025-01-29 10:57:11,108 - JUNIFER - INFO - Parcellation parameters:
2025-01-29 10:57:11,108 - JUNIFER - INFO -      resolution: None
2025-01-29 10:57:11,108 - JUNIFER - INFO -      n_rois: 1000
2025-01-29 10:57:11,108 - JUNIFER - INFO -      yeo_networks: 7
2025-01-29 10:57:11,109 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-01-29 10:57:11,111 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-01-29 10:57:11,386 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5
2025-01-29 10:57:12,462 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1
2025-01-29 10:57:12,971 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpx5df15lu/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_ca7a062e-de2f-11ef-acef-0242ac1200022az0u5n_/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpx5df15lu/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_ca7a062e-de2f-11ef-acef-0242ac1200022az0u5n_/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpx5df15lu/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_ca7a062e-de2f-11ef-acef-0242ac1200022az0u5n_/parcellation_warped.nii.gz
2025-01-29 10:58:06,480 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-01-29 10:58:07,976 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpm2of46x2/test.sqlite (multiple output)>
2025-01-29 10:58:08,154 - JUNIFER - INFO - Marker collection fitting done
2025-01-29 10:58:08,161 - JUNIFER - INFO - Getting element sub-10
2025-01-29 10:58:08,162 - JUNIFER - INFO - Fitting pipeline
2025-01-29 10:58:08,162 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0011_MR1/mwrc1OAS1_0011_MR1_mpr_anon_fslswapdim_bet.nii.gz
2025-01-29 10:58:08,162 - JUNIFER - INFO - VBM_GM is of type NIFTI
2025-01-29 10:58:08,163 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2025-01-29 10:58:08,163 - JUNIFER - INFO - Computing VBM_GM
2025-01-29 10:58:08,163 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-01-29 10:58:08,163 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2025-01-29 10:58:08,163 - JUNIFER - INFO - Parcellation parameters:
2025-01-29 10:58:08,163 - JUNIFER - INFO -      resolution: None
2025-01-29 10:58:08,163 - JUNIFER - INFO -      n_rois: 1000
2025-01-29 10:58:08,163 - JUNIFER - INFO -      yeo_networks: 7
2025-01-29 10:58:08,163 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-01-29 10:58:08,165 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-01-29 10:58:08,441 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5
2025-01-29 10:58:09,491 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1
2025-01-29 10:58:09,998 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmplzrasoag/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_ec7bfa70-de2f-11ef-acef-0242ac120002a73gafsu/prewarp_parcellation.nii.gz -r /tmp/junifer/tmplzrasoag/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_ec7bfa70-de2f-11ef-acef-0242ac120002a73gafsu/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmplzrasoag/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_ec7bfa70-de2f-11ef-acef-0242ac120002a73gafsu/parcellation_warped.nii.gz
2025-01-29 10:59:03,918 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-01-29 10:59:05,382 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpm2of46x2/test.sqlite (multiple output)>
2025-01-29 10:59:05,555 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2025-01-29 10:59:05,556 - JUNIFER - INFO - Computing VBM_GM
2025-01-29 10:59:05,556 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-01-29 10:59:05,556 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2025-01-29 10:59:05,556 - JUNIFER - INFO - Parcellation parameters:
2025-01-29 10:59:05,556 - JUNIFER - INFO -      resolution: None
2025-01-29 10:59:05,556 - JUNIFER - INFO -      n_rois: 1000
2025-01-29 10:59:05,556 - JUNIFER - INFO -      yeo_networks: 7
2025-01-29 10:59:05,556 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-01-29 10:59:05,558 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-01-29 10:59:05,835 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5
2025-01-29 10:59:06,896 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1
2025-01-29 10:59:07,405 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmplzrasoag/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_0eb18e2a-de30-11ef-acef-0242ac120002u18g5hna/prewarp_parcellation.nii.gz -r /tmp/junifer/tmplzrasoag/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_0eb18e2a-de30-11ef-acef-0242ac120002u18g5hna/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmplzrasoag/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_0eb18e2a-de30-11ef-acef-0242ac120002u18g5hna/parcellation_warped.nii.gz
2025-01-29 11:00:00,893 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-01-29 11:00:02,479 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpm2of46x2/test.sqlite (multiple output)>
2025-01-29 11:00:02,660 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2025-01-29 11:00:02,660 - JUNIFER - INFO - Computing VBM_GM
2025-01-29 11:00:02,661 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2025-01-29 11:00:02,661 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2025-01-29 11:00:02,661 - JUNIFER - INFO - Parcellation parameters:
2025-01-29 11:00:02,661 - JUNIFER - INFO -      resolution: None
2025-01-29 11:00:02,661 - JUNIFER - INFO -      n_rois: 1000
2025-01-29 11:00:02,661 - JUNIFER - INFO -      yeo_networks: 7
2025-01-29 11:00:02,661 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2025-01-29 11:00:02,663 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2025-01-29 11:00:02,942 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5
2025-01-29 11:00:04,008 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1
2025-01-29 11:00:04,519 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmplzrasoag/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_30bb6b9e-de30-11ef-acef-0242ac1200029neas2uy/prewarp_parcellation.nii.gz -r /tmp/junifer/tmplzrasoag/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_30bb6b9e-de30-11ef-acef-0242ac1200029neas2uy/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmplzrasoag/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_30bb6b9e-de30-11ef-acef-0242ac1200029neas2uy/parcellation_warped.nii.gz
2025-01-29 11:00:58,156 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2025-01-29 11:00:59,618 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpm2of46x2/test.sqlite (multiple output)>
2025-01-29 11:00:59,796 - JUNIFER - INFO - Marker collection fitting done

import tempfile

import junifer.testing.registry  # noqa: F401
from junifer.api import run


datagrabber = {
    "kind": "OasisVBMTestingDataGrabber",
}

markers = [
    {
        "name": "Schaefer1000x7_TrimMean80",
        "kind": "ParcelAggregation",
        "parcellation": "Schaefer1000x7",
        "method": "trim_mean",
        "method_params": {"proportiontocut": 0.2},
    },
    {
        "name": "Schaefer1000x7_Mean",
        "kind": "ParcelAggregation",
        "parcellation": "Schaefer1000x7",
        "method": "mean",
    },
    {
        "name": "Schaefer1000x7_Std",
        "kind": "ParcelAggregation",
        "parcellation": "Schaefer1000x7",
        "method": "std",
    },
]

storage = {
    "kind": "SQLiteFeatureStorage",
}

with tempfile.TemporaryDirectory() as tmpdir:
    uri = f"{tmpdir}/test.sqlite"
    storage["uri"] = uri
    run(
        workdir="/tmp",
        datagrabber=datagrabber,
        markers=markers,
        storage=storage,
    )