.. DO NOT EDIT. .. THIS FILE WAS AUTOMATICALLY GENERATED BY SPHINX-GALLERY. .. TO MAKE CHANGES, EDIT THE SOURCE PYTHON FILE: .. "auto_examples/run_junifer_julearn.py" .. LINE NUMBERS ARE GIVEN BELOW. .. only:: html .. note:: :class: sphx-glr-download-link-note :ref:`Go to the end ` to download the full example code. .. rst-class:: sphx-glr-example-title .. _sphx_glr_auto_examples_run_junifer_julearn.py: Run junifer and julearn. ======================== This example uses a ParcelAggregation marker to compute the mean of each parcel using the Schaefer parcellation (100 rois, 7 Yeo networks) for a 3D nifti to extract some features for machine learning using julearn to predict some other data. Authors: Leonard Sasse, Sami Hamdan, Nicolas Nieto, Synchon Mandal License: BSD 3 clause .. GENERATED FROM PYTHON SOURCE LINES 14-27 .. code-block:: Python import tempfile import nilearn import pandas as pd from julearn import run_cross_validation, PipelineCreator import junifer.testing.registry # noqa: F401 from junifer.api import collect, run from junifer.storage.sqlite import SQLiteFeatureStorage from junifer.utils import configure_logging .. GENERATED FROM PYTHON SOURCE LINES 28-29 Set the logging level to info to see extra information: .. GENERATED FROM PYTHON SOURCE LINES 29-32 .. code-block:: Python configure_logging(level="INFO") .. rst-class:: sphx-glr-script-out .. code-block:: none /__w/junifer/junifer/junifer/utils/logging.py:193: UserWarning: The '__version__' attribute is deprecated and will be removed in MarkupSafe 3.1. Use feature detection, or `importlib.metadata.version("markupsafe")`, instead. vstring = str(getattr(module, "__version__", None)) 2025-01-29 11:01:59,928 - JUNIFER - INFO - ===== Lib Versions ===== 2025-01-29 11:01:59,928 - JUNIFER - INFO - numpy: 1.26.4 2025-01-29 11:01:59,928 - JUNIFER - INFO - scipy: 1.15.0 2025-01-29 11:01:59,928 - JUNIFER - INFO - pandas: 2.1.4 2025-01-29 11:01:59,928 - JUNIFER - INFO - nilearn: 0.10.4 2025-01-29 11:01:59,928 - JUNIFER - INFO - nibabel: 5.3.2 2025-01-29 11:01:59,928 - JUNIFER - INFO - junifer: 0.0.6.dev429 2025-01-29 11:01:59,929 - JUNIFER - INFO - ======================== .. GENERATED FROM PYTHON SOURCE LINES 33-34 Define the markers you want: .. GENERATED FROM PYTHON SOURCE LINES 34-52 .. code-block:: Python marker_dicts = [ { "name": "Schaefer100x17_TrimMean80", "kind": "ParcelAggregation", "parcellation": "Schaefer100x17", "method": "trim_mean", "method_params": {"proportiontocut": 0.2}, }, { "name": "Schaefer200x17_Mean", "kind": "ParcelAggregation", "parcellation": "Schaefer200x17", "method": "mean", }, ] .. GENERATED FROM PYTHON SOURCE LINES 53-54 Define target and confounds for julearn machine learning: .. GENERATED FROM PYTHON SOURCE LINES 54-58 .. code-block:: Python y = "age" confound = "sex" .. GENERATED FROM PYTHON SOURCE LINES 59-61 Load the VBM phenotype data for machine learning data: - Fetch the Oasis dataset .. GENERATED FROM PYTHON SOURCE LINES 61-70 .. code-block:: Python oasis_dataset = nilearn.datasets.fetch_oasis_vbm() age = oasis_dataset.ext_vars[y][:10] sex = ( pd.Series(oasis_dataset.ext_vars["mf"][:10]) .map(lambda x: 1 if x == "F" else 0) .values ) .. GENERATED FROM PYTHON SOURCE LINES 71-72 Create a temporary directory for junifer feature extraction: .. GENERATED FROM PYTHON SOURCE LINES 72-92 .. code-block:: Python with tempfile.TemporaryDirectory() as tmpdir: storage = {"kind": "SQLiteFeatureStorage", "uri": f"{tmpdir}/test.sqlite"} # run the defined junifer feature extraction pipeline run( workdir="/tmp", datagrabber={"kind": "OasisVBMTestingDataGrabber"}, markers=marker_dicts, storage=storage, ) # read in extracted features and add confounds and targets # for julearn run cross validation collect(storage) db = SQLiteFeatureStorage(uri=storage["uri"]) df_vbm = db.read_df(feature_name="VBM_GM_Schaefer200x17_Mean_aggregation") oasis_subjects = [x[0] for x in df_vbm.index] df_vbm.index = oasis_subjects .. rst-class:: sphx-glr-script-out .. code-block:: none 2025-01-29 11:01:59,946 - JUNIFER - INFO - Validating Marker Collection 2025-01-29 11:01:59,946 - JUNIFER - INFO - DataGrabber output type: ['VBM_GM'] 2025-01-29 11:01:59,946 - JUNIFER - INFO - Validating Data Reader: 2025-01-29 11:01:59,946 - JUNIFER - INFO - Data Reader output type: ['VBM_GM'] 2025-01-29 11:01:59,946 - JUNIFER - INFO - Validating Marker: Schaefer100x17_TrimMean80 2025-01-29 11:01:59,946 - JUNIFER - INFO - Marker output type: ['vector'] 2025-01-29 11:01:59,946 - JUNIFER - INFO - Validating storage for Schaefer100x17_TrimMean80 2025-01-29 11:01:59,946 - JUNIFER - INFO - Validating Marker: Schaefer200x17_Mean 2025-01-29 11:01:59,946 - JUNIFER - INFO - Marker output type: ['vector'] 2025-01-29 11:01:59,946 - JUNIFER - INFO - Validating storage for Schaefer200x17_Mean 2025-01-29 11:01:59,951 - JUNIFER - INFO - Getting element sub-01 2025-01-29 11:01:59,951 - JUNIFER - INFO - Fitting pipeline 2025-01-29 11:01:59,951 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0001_MR1/mwrc1OAS1_0001_MR1_mpr_anon_fslswapdim_bet.nii.gz 2025-01-29 11:01:59,951 - JUNIFER - INFO - VBM_GM is of type NIFTI 2025-01-29 11:01:59,952 - JUNIFER - INFO - Fitting marker Schaefer100x17_TrimMean80 2025-01-29 11:01:59,952 - JUNIFER - INFO - Computing VBM_GM 2025-01-29 11:01:59,952 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2025-01-29 11:01:59,952 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2025-01-29 11:01:59,953 - JUNIFER - INFO - Parcellation parameters: 2025-01-29 11:01:59,953 - JUNIFER - INFO - resolution: None 2025-01-29 11:01:59,953 - JUNIFER - INFO - n_rois: 100 2025-01-29 11:01:59,953 - JUNIFER - INFO - yeo_networks: 17 2025-01-29 11:01:59,953 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2025-01-29 11:01:59,954 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_100Parcels_17Networks_order_FSLMNI152_1mm.nii.gz 2025-01-29 11:02:00,222 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 2025-01-29 11:02:01,300 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1 2025-01-29 11:02:01,802 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpf3pmyu85/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_76a2dcdc-de30-11ef-acef-0242ac120002crjjb_ku/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpf3pmyu85/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_76a2dcdc-de30-11ef-acef-0242ac120002crjjb_ku/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpf3pmyu85/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_76a2dcdc-de30-11ef-acef-0242ac120002crjjb_ku/parcellation_warped.nii.gz 2025-01-29 11:02:08,058 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2025-01-29 11:02:09,422 - JUNIFER - INFO - Storing in 2025-01-29 11:02:09,457 - JUNIFER - INFO - Fitting marker Schaefer200x17_Mean 2025-01-29 11:02:09,457 - JUNIFER - INFO - Computing VBM_GM 2025-01-29 11:02:09,457 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2025-01-29 11:02:09,458 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2025-01-29 11:02:09,458 - JUNIFER - INFO - Parcellation parameters: 2025-01-29 11:02:09,458 - JUNIFER - INFO - resolution: None 2025-01-29 11:02:09,458 - JUNIFER - INFO - n_rois: 200 2025-01-29 11:02:09,458 - JUNIFER - INFO - yeo_networks: 17 2025-01-29 11:02:09,458 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2025-01-29 11:02:09,459 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_200Parcels_17Networks_order_FSLMNI152_1mm.nii.gz 2025-01-29 11:02:09,733 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 2025-01-29 11:02:10,825 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1 2025-01-29 11:02:11,329 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpf3pmyu85/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_7c4e26d2-de30-11ef-acef-0242ac120002hy72bfmp/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpf3pmyu85/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_7c4e26d2-de30-11ef-acef-0242ac120002hy72bfmp/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpf3pmyu85/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_7c4e26d2-de30-11ef-acef-0242ac120002hy72bfmp/parcellation_warped.nii.gz 2025-01-29 11:02:22,534 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2025-01-29 11:02:23,862 - JUNIFER - INFO - Storing in 2025-01-29 11:02:23,914 - JUNIFER - INFO - Marker collection fitting done 2025-01-29 11:02:23,919 - JUNIFER - INFO - Getting element sub-02 2025-01-29 11:02:23,919 - JUNIFER - INFO - Fitting pipeline 2025-01-29 11:02:23,919 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0002_MR1/mwrc1OAS1_0002_MR1_mpr_anon_fslswapdim_bet.nii.gz 2025-01-29 11:02:23,920 - JUNIFER - INFO - VBM_GM is of type NIFTI 2025-01-29 11:02:23,920 - JUNIFER - INFO - Fitting marker Schaefer100x17_TrimMean80 2025-01-29 11:02:23,921 - JUNIFER - INFO - Computing VBM_GM 2025-01-29 11:02:23,921 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2025-01-29 11:02:23,921 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2025-01-29 11:02:23,921 - JUNIFER - INFO - Parcellation parameters: 2025-01-29 11:02:23,921 - JUNIFER - INFO - resolution: None 2025-01-29 11:02:23,921 - JUNIFER - INFO - n_rois: 100 2025-01-29 11:02:23,921 - JUNIFER - INFO - yeo_networks: 17 2025-01-29 11:02:23,921 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2025-01-29 11:02:23,922 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_100Parcels_17Networks_order_FSLMNI152_1mm.nii.gz 2025-01-29 11:02:24,190 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 2025-01-29 11:02:25,263 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1 2025-01-29 11:02:25,764 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpe_1q5jgy/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_84ec3982-de30-11ef-acef-0242ac120002cotniqtc/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpe_1q5jgy/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_84ec3982-de30-11ef-acef-0242ac120002cotniqtc/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpe_1q5jgy/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_84ec3982-de30-11ef-acef-0242ac120002cotniqtc/parcellation_warped.nii.gz 2025-01-29 11:02:31,886 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2025-01-29 11:02:33,196 - JUNIFER - INFO - Storing in 2025-01-29 11:02:33,230 - JUNIFER - INFO - Fitting marker Schaefer200x17_Mean 2025-01-29 11:02:33,231 - JUNIFER - INFO - Computing VBM_GM 2025-01-29 11:02:33,231 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2025-01-29 11:02:33,231 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2025-01-29 11:02:33,231 - JUNIFER - INFO - Parcellation parameters: 2025-01-29 11:02:33,231 - JUNIFER - INFO - resolution: None 2025-01-29 11:02:33,231 - JUNIFER - INFO - n_rois: 200 2025-01-29 11:02:33,231 - JUNIFER - INFO - yeo_networks: 17 2025-01-29 11:02:33,231 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2025-01-29 11:02:33,232 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_200Parcels_17Networks_order_FSLMNI152_1mm.nii.gz 2025-01-29 11:02:33,501 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 2025-01-29 11:02:34,597 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1 2025-01-29 11:02:35,100 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpe_1q5jgy/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_8a78f8d6-de30-11ef-acef-0242ac1200026wtosamo/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpe_1q5jgy/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_8a78f8d6-de30-11ef-acef-0242ac1200026wtosamo/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpe_1q5jgy/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_8a78f8d6-de30-11ef-acef-0242ac1200026wtosamo/parcellation_warped.nii.gz 2025-01-29 11:02:46,351 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2025-01-29 11:02:47,665 - JUNIFER - INFO - Storing in 2025-01-29 11:02:47,717 - JUNIFER - INFO - Marker collection fitting done 2025-01-29 11:02:47,721 - JUNIFER - INFO - Getting element sub-03 2025-01-29 11:02:47,721 - JUNIFER - INFO - Fitting pipeline 2025-01-29 11:02:47,721 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0003_MR1/mwrc1OAS1_0003_MR1_mpr_anon_fslswapdim_bet.nii.gz 2025-01-29 11:02:47,721 - JUNIFER - INFO - VBM_GM is of type NIFTI 2025-01-29 11:02:47,722 - JUNIFER - INFO - Fitting marker Schaefer100x17_TrimMean80 2025-01-29 11:02:47,722 - JUNIFER - INFO - Computing VBM_GM 2025-01-29 11:02:47,722 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2025-01-29 11:02:47,722 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2025-01-29 11:02:47,722 - JUNIFER - INFO - Parcellation parameters: 2025-01-29 11:02:47,722 - JUNIFER - INFO - resolution: None 2025-01-29 11:02:47,722 - JUNIFER - INFO - n_rois: 100 2025-01-29 11:02:47,723 - JUNIFER - INFO - yeo_networks: 17 2025-01-29 11:02:47,723 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2025-01-29 11:02:47,724 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_100Parcels_17Networks_order_FSLMNI152_1mm.nii.gz 2025-01-29 11:02:47,991 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 2025-01-29 11:02:49,072 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1 2025-01-29 11:02:49,578 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpeyns53rx/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_931be39a-de30-11ef-acef-0242ac120002dhb6ewdj/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpeyns53rx/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_931be39a-de30-11ef-acef-0242ac120002dhb6ewdj/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpeyns53rx/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_931be39a-de30-11ef-acef-0242ac120002dhb6ewdj/parcellation_warped.nii.gz 2025-01-29 11:02:55,727 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2025-01-29 11:02:57,128 - JUNIFER - INFO - Storing in 2025-01-29 11:02:57,164 - JUNIFER - INFO - Fitting marker Schaefer200x17_Mean 2025-01-29 11:02:57,164 - JUNIFER - INFO - Computing VBM_GM 2025-01-29 11:02:57,165 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2025-01-29 11:02:57,165 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2025-01-29 11:02:57,165 - JUNIFER - INFO - Parcellation parameters: 2025-01-29 11:02:57,165 - JUNIFER - INFO - resolution: None 2025-01-29 11:02:57,165 - JUNIFER - INFO - n_rois: 200 2025-01-29 11:02:57,165 - JUNIFER - INFO - yeo_networks: 17 2025-01-29 11:02:57,165 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2025-01-29 11:02:57,166 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_200Parcels_17Networks_order_FSLMNI152_1mm.nii.gz 2025-01-29 11:02:57,435 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 2025-01-29 11:02:58,526 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1 2025-01-29 11:02:59,031 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpeyns53rx/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_98bcf956-de30-11ef-acef-0242ac120002i74u3o07/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpeyns53rx/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_98bcf956-de30-11ef-acef-0242ac120002i74u3o07/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpeyns53rx/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_98bcf956-de30-11ef-acef-0242ac120002i74u3o07/parcellation_warped.nii.gz 2025-01-29 11:03:10,151 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2025-01-29 11:03:11,489 - JUNIFER - INFO - Storing in 2025-01-29 11:03:11,541 - JUNIFER - INFO - Marker collection fitting done 2025-01-29 11:03:11,546 - JUNIFER - INFO - Getting element sub-04 2025-01-29 11:03:11,546 - JUNIFER - INFO - Fitting pipeline 2025-01-29 11:03:11,546 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0004_MR1/mwrc1OAS1_0004_MR1_mpr_anon_fslswapdim_bet.nii.gz 2025-01-29 11:03:11,546 - JUNIFER - INFO - VBM_GM is of type NIFTI 2025-01-29 11:03:11,547 - JUNIFER - INFO - Fitting marker Schaefer100x17_TrimMean80 2025-01-29 11:03:11,547 - JUNIFER - INFO - Computing VBM_GM 2025-01-29 11:03:11,547 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2025-01-29 11:03:11,547 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2025-01-29 11:03:11,547 - JUNIFER - INFO - Parcellation parameters: 2025-01-29 11:03:11,547 - JUNIFER - INFO - resolution: None 2025-01-29 11:03:11,547 - JUNIFER - INFO - n_rois: 100 2025-01-29 11:03:11,547 - JUNIFER - INFO - yeo_networks: 17 2025-01-29 11:03:11,547 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2025-01-29 11:03:11,548 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_100Parcels_17Networks_order_FSLMNI152_1mm.nii.gz 2025-01-29 11:03:11,817 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 2025-01-29 11:03:12,901 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1 2025-01-29 11:03:13,404 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpmdlh023m/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_a14f5a8c-de30-11ef-acef-0242ac120002_nb8owl2/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpmdlh023m/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_a14f5a8c-de30-11ef-acef-0242ac120002_nb8owl2/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpmdlh023m/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_a14f5a8c-de30-11ef-acef-0242ac120002_nb8owl2/parcellation_warped.nii.gz 2025-01-29 11:03:19,590 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2025-01-29 11:03:20,935 - JUNIFER - INFO - Storing in 2025-01-29 11:03:20,969 - JUNIFER - INFO - Fitting marker Schaefer200x17_Mean 2025-01-29 11:03:20,969 - JUNIFER - INFO - Computing VBM_GM 2025-01-29 11:03:20,969 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2025-01-29 11:03:20,969 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2025-01-29 11:03:20,969 - JUNIFER - INFO - Parcellation parameters: 2025-01-29 11:03:20,969 - JUNIFER - INFO - resolution: None 2025-01-29 11:03:20,969 - JUNIFER - INFO - n_rois: 200 2025-01-29 11:03:20,969 - JUNIFER - INFO - yeo_networks: 17 2025-01-29 11:03:20,969 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2025-01-29 11:03:20,971 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_200Parcels_17Networks_order_FSLMNI152_1mm.nii.gz 2025-01-29 11:03:21,241 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 2025-01-29 11:03:22,325 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1 2025-01-29 11:03:22,831 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpmdlh023m/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_a6ed6236-de30-11ef-acef-0242ac120002v4i80b7u/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpmdlh023m/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_a6ed6236-de30-11ef-acef-0242ac120002v4i80b7u/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpmdlh023m/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_a6ed6236-de30-11ef-acef-0242ac120002v4i80b7u/parcellation_warped.nii.gz 2025-01-29 11:03:33,986 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2025-01-29 11:03:35,298 - JUNIFER - INFO - Storing in 2025-01-29 11:03:35,421 - JUNIFER - INFO - Marker collection fitting done 2025-01-29 11:03:35,426 - JUNIFER - INFO - Getting element sub-05 2025-01-29 11:03:35,426 - JUNIFER - INFO - Fitting pipeline 2025-01-29 11:03:35,426 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0005_MR1/mwrc1OAS1_0005_MR1_mpr_anon_fslswapdim_bet.nii.gz 2025-01-29 11:03:35,426 - JUNIFER - INFO - VBM_GM is of type NIFTI 2025-01-29 11:03:35,427 - JUNIFER - INFO - Fitting marker Schaefer100x17_TrimMean80 2025-01-29 11:03:35,427 - JUNIFER - INFO - Computing VBM_GM 2025-01-29 11:03:35,427 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2025-01-29 11:03:35,427 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2025-01-29 11:03:35,427 - JUNIFER - INFO - Parcellation parameters: 2025-01-29 11:03:35,427 - JUNIFER - INFO - resolution: None 2025-01-29 11:03:35,427 - JUNIFER - INFO - n_rois: 100 2025-01-29 11:03:35,427 - JUNIFER - INFO - yeo_networks: 17 2025-01-29 11:03:35,428 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2025-01-29 11:03:35,429 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_100Parcels_17Networks_order_FSLMNI152_1mm.nii.gz 2025-01-29 11:03:35,700 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 2025-01-29 11:03:36,798 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1 2025-01-29 11:03:37,301 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpa5ivxizz/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_af8bb942-de30-11ef-acef-0242ac1200020agf9lt4/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpa5ivxizz/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_af8bb942-de30-11ef-acef-0242ac1200020agf9lt4/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpa5ivxizz/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_af8bb942-de30-11ef-acef-0242ac1200020agf9lt4/parcellation_warped.nii.gz 2025-01-29 11:03:43,466 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2025-01-29 11:03:44,814 - JUNIFER - INFO - Storing in 2025-01-29 11:03:44,850 - JUNIFER - INFO - Fitting marker Schaefer200x17_Mean 2025-01-29 11:03:44,850 - JUNIFER - INFO - Computing VBM_GM 2025-01-29 11:03:44,850 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2025-01-29 11:03:44,850 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2025-01-29 11:03:44,850 - JUNIFER - INFO - Parcellation parameters: 2025-01-29 11:03:44,850 - JUNIFER - INFO - resolution: None 2025-01-29 11:03:44,850 - JUNIFER - INFO - n_rois: 200 2025-01-29 11:03:44,850 - JUNIFER - INFO - yeo_networks: 17 2025-01-29 11:03:44,850 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2025-01-29 11:03:44,852 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_200Parcels_17Networks_order_FSLMNI152_1mm.nii.gz 2025-01-29 11:03:45,122 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 2025-01-29 11:03:46,211 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1 2025-01-29 11:03:46,715 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpa5ivxizz/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_b5294874-de30-11ef-acef-0242ac120002fwmt5ofu/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpa5ivxizz/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_b5294874-de30-11ef-acef-0242ac120002fwmt5ofu/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpa5ivxizz/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_b5294874-de30-11ef-acef-0242ac120002fwmt5ofu/parcellation_warped.nii.gz 2025-01-29 11:03:57,879 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2025-01-29 11:03:59,326 - JUNIFER - INFO - Storing in 2025-01-29 11:03:59,380 - JUNIFER - INFO - Marker collection fitting done 2025-01-29 11:03:59,385 - JUNIFER - INFO - Getting element sub-06 2025-01-29 11:03:59,385 - JUNIFER - INFO - Fitting pipeline 2025-01-29 11:03:59,385 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0006_MR1/mwrc1OAS1_0006_MR1_mpr_anon_fslswapdim_bet.nii.gz 2025-01-29 11:03:59,385 - JUNIFER - INFO - VBM_GM is of type NIFTI 2025-01-29 11:03:59,386 - JUNIFER - INFO - Fitting marker Schaefer100x17_TrimMean80 2025-01-29 11:03:59,386 - JUNIFER - INFO - Computing VBM_GM 2025-01-29 11:03:59,386 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2025-01-29 11:03:59,386 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2025-01-29 11:03:59,387 - JUNIFER - INFO - Parcellation parameters: 2025-01-29 11:03:59,387 - JUNIFER - INFO - resolution: None 2025-01-29 11:03:59,387 - JUNIFER - INFO - n_rois: 100 2025-01-29 11:03:59,387 - JUNIFER - INFO - yeo_networks: 17 2025-01-29 11:03:59,387 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2025-01-29 11:03:59,388 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_100Parcels_17Networks_order_FSLMNI152_1mm.nii.gz 2025-01-29 11:03:59,658 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 2025-01-29 11:04:00,776 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1 2025-01-29 11:04:01,280 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp77pv9v3d/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_bdd34cea-de30-11ef-acef-0242ac120002je3p5mc_/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp77pv9v3d/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_bdd34cea-de30-11ef-acef-0242ac120002je3p5mc_/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmp77pv9v3d/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_bdd34cea-de30-11ef-acef-0242ac120002je3p5mc_/parcellation_warped.nii.gz 2025-01-29 11:04:07,501 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2025-01-29 11:04:08,911 - JUNIFER - INFO - Storing in 2025-01-29 11:04:08,945 - JUNIFER - INFO - Fitting marker Schaefer200x17_Mean 2025-01-29 11:04:08,945 - JUNIFER - INFO - Computing VBM_GM 2025-01-29 11:04:08,945 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2025-01-29 11:04:08,945 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2025-01-29 11:04:08,945 - JUNIFER - INFO - Parcellation parameters: 2025-01-29 11:04:08,946 - JUNIFER - INFO - resolution: None 2025-01-29 11:04:08,946 - JUNIFER - INFO - n_rois: 200 2025-01-29 11:04:08,946 - JUNIFER - INFO - yeo_networks: 17 2025-01-29 11:04:08,946 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2025-01-29 11:04:08,947 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_200Parcels_17Networks_order_FSLMNI152_1mm.nii.gz 2025-01-29 11:04:09,219 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 2025-01-29 11:04:10,316 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1 2025-01-29 11:04:10,818 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp77pv9v3d/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_c3864002-de30-11ef-acef-0242ac12000266bd8fy0/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp77pv9v3d/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_c3864002-de30-11ef-acef-0242ac12000266bd8fy0/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmp77pv9v3d/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_c3864002-de30-11ef-acef-0242ac12000266bd8fy0/parcellation_warped.nii.gz 2025-01-29 11:04:21,924 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2025-01-29 11:04:23,287 - JUNIFER - INFO - Storing in 2025-01-29 11:04:23,339 - JUNIFER - INFO - Marker collection fitting done 2025-01-29 11:04:23,343 - JUNIFER - INFO - Getting element sub-07 2025-01-29 11:04:23,344 - JUNIFER - INFO - Fitting pipeline 2025-01-29 11:04:23,344 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0007_MR1/mwrc1OAS1_0007_MR1_mpr_anon_fslswapdim_bet.nii.gz 2025-01-29 11:04:23,344 - JUNIFER - INFO - VBM_GM is of type NIFTI 2025-01-29 11:04:23,345 - JUNIFER - INFO - Fitting marker Schaefer100x17_TrimMean80 2025-01-29 11:04:23,345 - JUNIFER - INFO - Computing VBM_GM 2025-01-29 11:04:23,345 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2025-01-29 11:04:23,345 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2025-01-29 11:04:23,345 - JUNIFER - INFO - Parcellation parameters: 2025-01-29 11:04:23,345 - JUNIFER - INFO - resolution: None 2025-01-29 11:04:23,345 - JUNIFER - INFO - n_rois: 100 2025-01-29 11:04:23,345 - JUNIFER - INFO - yeo_networks: 17 2025-01-29 11:04:23,345 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2025-01-29 11:04:23,346 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_100Parcels_17Networks_order_FSLMNI152_1mm.nii.gz 2025-01-29 11:04:23,614 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 2025-01-29 11:04:24,685 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1 2025-01-29 11:04:25,186 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmphotgmqco/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_cc1ae2f4-de30-11ef-acef-0242ac120002qyg59bqc/prewarp_parcellation.nii.gz -r /tmp/junifer/tmphotgmqco/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_cc1ae2f4-de30-11ef-acef-0242ac120002qyg59bqc/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmphotgmqco/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_cc1ae2f4-de30-11ef-acef-0242ac120002qyg59bqc/parcellation_warped.nii.gz 2025-01-29 11:04:31,400 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2025-01-29 11:04:32,730 - JUNIFER - INFO - Storing in 2025-01-29 11:04:32,765 - JUNIFER - INFO - Fitting marker Schaefer200x17_Mean 2025-01-29 11:04:32,765 - JUNIFER - INFO - Computing VBM_GM 2025-01-29 11:04:32,765 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2025-01-29 11:04:32,765 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2025-01-29 11:04:32,765 - JUNIFER - INFO - Parcellation parameters: 2025-01-29 11:04:32,766 - JUNIFER - INFO - resolution: None 2025-01-29 11:04:32,766 - JUNIFER - INFO - n_rois: 200 2025-01-29 11:04:32,766 - JUNIFER - INFO - yeo_networks: 17 2025-01-29 11:04:32,766 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2025-01-29 11:04:32,767 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_200Parcels_17Networks_order_FSLMNI152_1mm.nii.gz 2025-01-29 11:04:33,037 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 2025-01-29 11:04:34,126 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1 2025-01-29 11:04:34,646 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmphotgmqco/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_d1b87d34-de30-11ef-acef-0242ac120002o88xcezy/prewarp_parcellation.nii.gz -r /tmp/junifer/tmphotgmqco/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_d1b87d34-de30-11ef-acef-0242ac120002o88xcezy/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmphotgmqco/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_d1b87d34-de30-11ef-acef-0242ac120002o88xcezy/parcellation_warped.nii.gz 2025-01-29 11:04:45,851 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2025-01-29 11:04:47,193 - JUNIFER - INFO - Storing in 2025-01-29 11:04:47,245 - JUNIFER - INFO - Marker collection fitting done 2025-01-29 11:04:47,250 - JUNIFER - INFO - Getting element sub-08 2025-01-29 11:04:47,250 - JUNIFER - INFO - Fitting pipeline 2025-01-29 11:04:47,250 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0009_MR1/mwrc1OAS1_0009_MR1_mpr_anon_fslswapdim_bet.nii.gz 2025-01-29 11:04:47,250 - JUNIFER - INFO - VBM_GM is of type NIFTI 2025-01-29 11:04:47,251 - JUNIFER - INFO - Fitting marker Schaefer100x17_TrimMean80 2025-01-29 11:04:47,251 - JUNIFER - INFO - Computing VBM_GM 2025-01-29 11:04:47,251 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2025-01-29 11:04:47,251 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2025-01-29 11:04:47,251 - JUNIFER - INFO - Parcellation parameters: 2025-01-29 11:04:47,251 - JUNIFER - INFO - resolution: None 2025-01-29 11:04:47,251 - JUNIFER - INFO - n_rois: 100 2025-01-29 11:04:47,251 - JUNIFER - INFO - yeo_networks: 17 2025-01-29 11:04:47,251 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2025-01-29 11:04:47,253 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_100Parcels_17Networks_order_FSLMNI152_1mm.nii.gz 2025-01-29 11:04:47,520 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 2025-01-29 11:04:48,592 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1 2025-01-29 11:04:49,094 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmptn1kfiep/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_da5a91de-de30-11ef-acef-0242ac120002k_xj8va3/prewarp_parcellation.nii.gz -r /tmp/junifer/tmptn1kfiep/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_da5a91de-de30-11ef-acef-0242ac120002k_xj8va3/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmptn1kfiep/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_da5a91de-de30-11ef-acef-0242ac120002k_xj8va3/parcellation_warped.nii.gz 2025-01-29 11:04:55,255 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2025-01-29 11:04:56,626 - JUNIFER - INFO - Storing in 2025-01-29 11:04:56,660 - JUNIFER - INFO - Fitting marker Schaefer200x17_Mean 2025-01-29 11:04:56,660 - JUNIFER - INFO - Computing VBM_GM 2025-01-29 11:04:56,660 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2025-01-29 11:04:56,660 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2025-01-29 11:04:56,660 - JUNIFER - INFO - Parcellation parameters: 2025-01-29 11:04:56,660 - JUNIFER - INFO - resolution: None 2025-01-29 11:04:56,660 - JUNIFER - INFO - n_rois: 200 2025-01-29 11:04:56,660 - JUNIFER - INFO - yeo_networks: 17 2025-01-29 11:04:56,660 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2025-01-29 11:04:56,662 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_200Parcels_17Networks_order_FSLMNI152_1mm.nii.gz 2025-01-29 11:04:56,932 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 2025-01-29 11:04:58,010 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1 2025-01-29 11:04:58,513 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmptn1kfiep/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_dff6c216-de30-11ef-acef-0242ac120002sm9apwwu/prewarp_parcellation.nii.gz -r /tmp/junifer/tmptn1kfiep/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_dff6c216-de30-11ef-acef-0242ac120002sm9apwwu/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmptn1kfiep/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_dff6c216-de30-11ef-acef-0242ac120002sm9apwwu/parcellation_warped.nii.gz 2025-01-29 11:05:09,623 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2025-01-29 11:05:10,987 - JUNIFER - INFO - Storing in 2025-01-29 11:05:11,040 - JUNIFER - INFO - Marker collection fitting done 2025-01-29 11:05:11,045 - JUNIFER - INFO - Getting element sub-09 2025-01-29 11:05:11,045 - JUNIFER - INFO - Fitting pipeline 2025-01-29 11:05:11,045 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0010_MR1/mwrc1OAS1_0010_MR1_mpr_anon_fslswapdim_bet.nii.gz 2025-01-29 11:05:11,045 - JUNIFER - INFO - VBM_GM is of type NIFTI 2025-01-29 11:05:11,046 - JUNIFER - INFO - Fitting marker Schaefer100x17_TrimMean80 2025-01-29 11:05:11,046 - JUNIFER - INFO - Computing VBM_GM 2025-01-29 11:05:11,046 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2025-01-29 11:05:11,046 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2025-01-29 11:05:11,046 - JUNIFER - INFO - Parcellation parameters: 2025-01-29 11:05:11,046 - JUNIFER - INFO - resolution: None 2025-01-29 11:05:11,046 - JUNIFER - INFO - n_rois: 100 2025-01-29 11:05:11,046 - JUNIFER - INFO - yeo_networks: 17 2025-01-29 11:05:11,046 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2025-01-29 11:05:11,048 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_100Parcels_17Networks_order_FSLMNI152_1mm.nii.gz 2025-01-29 11:05:11,317 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 2025-01-29 11:05:12,408 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1 2025-01-29 11:05:12,919 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpkpwll_ih/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_e8899f34-de30-11ef-acef-0242ac120002ercqaqda/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpkpwll_ih/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_e8899f34-de30-11ef-acef-0242ac120002ercqaqda/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpkpwll_ih/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_e8899f34-de30-11ef-acef-0242ac120002ercqaqda/parcellation_warped.nii.gz 2025-01-29 11:05:19,149 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2025-01-29 11:05:20,556 - JUNIFER - INFO - Storing in 2025-01-29 11:05:20,590 - JUNIFER - INFO - Fitting marker Schaefer200x17_Mean 2025-01-29 11:05:20,591 - JUNIFER - INFO - Computing VBM_GM 2025-01-29 11:05:20,591 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2025-01-29 11:05:20,591 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2025-01-29 11:05:20,591 - JUNIFER - INFO - Parcellation parameters: 2025-01-29 11:05:20,591 - JUNIFER - INFO - resolution: None 2025-01-29 11:05:20,591 - JUNIFER - INFO - n_rois: 200 2025-01-29 11:05:20,591 - JUNIFER - INFO - yeo_networks: 17 2025-01-29 11:05:20,591 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2025-01-29 11:05:20,592 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_200Parcels_17Networks_order_FSLMNI152_1mm.nii.gz 2025-01-29 11:05:20,863 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 2025-01-29 11:05:21,948 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1 2025-01-29 11:05:22,452 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpkpwll_ih/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_ee3a5996-de30-11ef-acef-0242ac120002v3lvvyph/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpkpwll_ih/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_ee3a5996-de30-11ef-acef-0242ac120002v3lvvyph/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmpkpwll_ih/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_ee3a5996-de30-11ef-acef-0242ac120002v3lvvyph/parcellation_warped.nii.gz 2025-01-29 11:05:33,682 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2025-01-29 11:05:35,063 - JUNIFER - INFO - Storing in 2025-01-29 11:05:35,117 - JUNIFER - INFO - Marker collection fitting done 2025-01-29 11:05:35,121 - JUNIFER - INFO - Getting element sub-10 2025-01-29 11:05:35,121 - JUNIFER - INFO - Fitting pipeline 2025-01-29 11:05:35,122 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0011_MR1/mwrc1OAS1_0011_MR1_mpr_anon_fslswapdim_bet.nii.gz 2025-01-29 11:05:35,122 - JUNIFER - INFO - VBM_GM is of type NIFTI 2025-01-29 11:05:35,123 - JUNIFER - INFO - Fitting marker Schaefer100x17_TrimMean80 2025-01-29 11:05:35,123 - JUNIFER - INFO - Computing VBM_GM 2025-01-29 11:05:35,123 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2025-01-29 11:05:35,123 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2025-01-29 11:05:35,123 - JUNIFER - INFO - Parcellation parameters: 2025-01-29 11:05:35,123 - JUNIFER - INFO - resolution: None 2025-01-29 11:05:35,123 - JUNIFER - INFO - n_rois: 100 2025-01-29 11:05:35,123 - JUNIFER - INFO - yeo_networks: 17 2025-01-29 11:05:35,123 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2025-01-29 11:05:35,124 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_100Parcels_17Networks_order_FSLMNI152_1mm.nii.gz 2025-01-29 11:05:35,393 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 2025-01-29 11:05:36,481 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1 2025-01-29 11:05:36,983 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp7dl0mq33/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_f6e3611e-de30-11ef-acef-0242ac120002465k3ca_/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp7dl0mq33/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_f6e3611e-de30-11ef-acef-0242ac120002465k3ca_/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmp7dl0mq33/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_f6e3611e-de30-11ef-acef-0242ac120002465k3ca_/parcellation_warped.nii.gz 2025-01-29 11:05:43,224 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2025-01-29 11:05:44,583 - JUNIFER - INFO - Storing in 2025-01-29 11:05:44,618 - JUNIFER - INFO - Fitting marker Schaefer200x17_Mean 2025-01-29 11:05:44,618 - JUNIFER - INFO - Computing VBM_GM 2025-01-29 11:05:44,618 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2025-01-29 11:05:44,618 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2025-01-29 11:05:44,619 - JUNIFER - INFO - Parcellation parameters: 2025-01-29 11:05:44,619 - JUNIFER - INFO - resolution: None 2025-01-29 11:05:44,619 - JUNIFER - INFO - n_rois: 200 2025-01-29 11:05:44,619 - JUNIFER - INFO - yeo_networks: 17 2025-01-29 11:05:44,619 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2025-01-29 11:05:44,620 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_200Parcels_17Networks_order_FSLMNI152_1mm.nii.gz 2025-01-29 11:05:44,891 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 2025-01-29 11:05:45,997 - JUNIFER - INFO - Downloading template MNI152Lin (T1w in resolution 1 2025-01-29 11:05:46,499 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp7dl0mq33/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_fc8cbe8a-de30-11ef-acef-0242ac120002eq7wyr_6/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp7dl0mq33/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_fc8cbe8a-de30-11ef-acef-0242ac120002eq7wyr_6/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/JQ/Pp/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5/SHA256E-s145422752--5091350b36f951d455dabd429ebe86c493c75a0217dca311ae355f1d62e080b0.h5 -o /tmp/junifer/tmp7dl0mq33/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_fc8cbe8a-de30-11ef-acef-0242ac120002eq7wyr_6/parcellation_warped.nii.gz 2025-01-29 11:05:57,594 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2025-01-29 11:05:58,977 - JUNIFER - INFO - Storing in 2025-01-29 11:05:59,028 - JUNIFER - INFO - Marker collection fitting done 2025-01-29 11:05:59,033 - JUNIFER - INFO - Collecting data using SQLiteFeatureStorage 2025-01-29 11:05:59,034 - JUNIFER - INFO - Collecting data from /tmp/tmp083ed45k/*test.sqlite file: 0it [00:00, ?it/s] feature: 0%| | 0/2 [00:00` .. container:: sphx-glr-download sphx-glr-download-python :download:`Download Python source code: run_junifer_julearn.py ` .. container:: sphx-glr-download sphx-glr-download-zip :download:`Download zipped: run_junifer_julearn.zip ` .. only:: html .. rst-class:: sphx-glr-signature `Gallery generated by Sphinx-Gallery `_