Note
Go to the end to download the full example code.
8.3. UKB VBM GMD Extraction¶
Authors: Federico Raimondo
License: BSD 3 clause
2024-12-09 10:37:54,384 - JUNIFER - INFO - Registering OasisVBMTestingDataGrabber in datagrabber
2024-12-09 10:37:54,384 - JUNIFER - INFO - Registering SPMAuditoryTestingDataGrabber in datagrabber
2024-12-09 10:37:54,384 - JUNIFER - INFO - Registering PartlyCloudyTestingDataGrabber in datagrabber
2024-12-09 10:38:00,359 - JUNIFER - INFO - Registering ParcelAggregation in marker
2024-12-09 10:38:00,368 - JUNIFER - INFO - Registering SQLiteFeatureStorage in storage
2024-12-09 10:38:00,368 - JUNIFER - INFO - Validating Marker Collection
2024-12-09 10:38:00,368 - JUNIFER - INFO - DataGrabber output type: ['VBM_GM']
2024-12-09 10:38:00,368 - JUNIFER - INFO - Validating Data Reader:
2024-12-09 10:38:00,368 - JUNIFER - INFO - Data Reader output type: ['VBM_GM']
2024-12-09 10:38:00,368 - JUNIFER - INFO - Validating Marker: Schaefer1000x7_TrimMean80
2024-12-09 10:38:00,368 - JUNIFER - INFO - Marker output type: ['vector']
2024-12-09 10:38:00,368 - JUNIFER - INFO - Validating storage for Schaefer1000x7_TrimMean80
2024-12-09 10:38:00,368 - JUNIFER - INFO - Validating Marker: Schaefer1000x7_Mean
2024-12-09 10:38:00,368 - JUNIFER - INFO - Marker output type: ['vector']
2024-12-09 10:38:00,368 - JUNIFER - INFO - Validating storage for Schaefer1000x7_Mean
2024-12-09 10:38:00,368 - JUNIFER - INFO - Validating Marker: Schaefer1000x7_Std
2024-12-09 10:38:00,369 - JUNIFER - INFO - Marker output type: ['vector']
2024-12-09 10:38:00,369 - JUNIFER - INFO - Validating storage for Schaefer1000x7_Std
Added README.md to /github/home/nilearn_data
Dataset created in /github/home/nilearn_data/oasis1
Downloading data from https://www.nitrc.org/frs/download.php/6364/archive_dartel.tgz ...
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Downloaded 902594560 of 905208634 bytes (99.7%, 0.1s remaining) ...done. (25 seconds, 0 min)
Extracting data from /github/home/nilearn_data/oasis1/7088b0bf88f5650db26e32ec3afdd589/archive_dartel.tgz..... done.
2024-12-09 10:38:30,700 - JUNIFER - INFO - Getting element sub-01
2024-12-09 10:38:30,700 - JUNIFER - INFO - Fitting pipeline
2024-12-09 10:38:30,700 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0001_MR1/mwrc1OAS1_0001_MR1_mpr_anon_fslswapdim_bet.nii.gz
2024-12-09 10:38:30,701 - JUNIFER - INFO - VBM_GM is of type NIFTI
2024-12-09 10:38:30,702 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2024-12-09 10:38:30,702 - JUNIFER - INFO - Computing VBM_GM
2024-12-09 10:38:30,702 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2024-12-09 10:38:30,702 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-12-09 10:38:30,702 - JUNIFER - INFO - Parcellation parameters:
2024-12-09 10:38:30,702 - JUNIFER - INFO - resolution: None
2024-12-09 10:38:30,702 - JUNIFER - INFO - n_rois: 1000
2024-12-09 10:38:30,702 - JUNIFER - INFO - yeo_networks: 7
2024-12-09 10:38:30,702 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2024-12-09 10:38:30,702 - JUNIFER - INFO - At least one of the parcellation files are missing. Fetching using nilearn.
Added README.md to /github/home/junifer/data/parcellations
Dataset created in /github/home/junifer/data/parcellations/schaefer_2018
Downloading data from https://raw.githubusercontent.com/ThomasYeoLab/CBIG/v0.14.3-Update_Yeo2011_Schaefer2018_labelname/stable_projects/brain_parcellation/Schaefer2018_LocalGlobal/Parcellations/MNI/Schaefer2018_1000Parcels_7Networks_order.txt ...
...done. (0 seconds, 0 min)
Downloading data from https://raw.githubusercontent.com/ThomasYeoLab/CBIG/v0.14.3-Update_Yeo2011_Schaefer2018_labelname/stable_projects/brain_parcellation/Schaefer2018_LocalGlobal/Parcellations/MNI/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz ...
...done. (0 seconds, 0 min)
2024-12-09 10:38:31,027 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2024-12-09 10:38:31,311 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-12-09 10:38:32,427 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
Downloading https://templateflow.s3.amazonaws.com/tpl-MNI152Lin/tpl-MNI152Lin_res-01_T1w.nii.gz
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50%|█████ | 5.34M/10.7M [00:00<00:00, 15.0MB/s]
79%|███████▉ | 8.46M/10.7M [00:00<00:00, 19.2MB/s]
100%|██████████| 10.7M/10.7M [00:00<00:00, 15.9MB/s]
2024-12-09 10:38:33,938 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpbkr_3zoj/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_bbcae92e-b619-11ef-88f6-0242ac120002_gnbnsnr/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpbkr_3zoj/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_bbcae92e-b619-11ef-88f6-0242ac120002_gnbnsnr/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpbkr_3zoj/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_bbcae92e-b619-11ef-88f6-0242ac120002_gnbnsnr/parcellation_warped.nii.gz
2024-12-09 10:39:55,955 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
2024-12-09 10:39:57,569 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpsva8rd29/test.sqlite (multiple output)>
2024-12-09 10:39:57,747 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2024-12-09 10:39:57,747 - JUNIFER - INFO - Computing VBM_GM
2024-12-09 10:39:57,748 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2024-12-09 10:39:57,748 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-12-09 10:39:57,748 - JUNIFER - INFO - Parcellation parameters:
2024-12-09 10:39:57,748 - JUNIFER - INFO - resolution: None
2024-12-09 10:39:57,748 - JUNIFER - INFO - n_rois: 1000
2024-12-09 10:39:57,748 - JUNIFER - INFO - yeo_networks: 7
2024-12-09 10:39:57,748 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2024-12-09 10:39:57,750 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2024-12-09 10:39:58,031 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-12-09 10:39:59,173 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
2024-12-09 10:39:59,689 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpbkr_3zoj/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_ef7b5218-b619-11ef-88f6-0242ac1200026pcaa4rc/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpbkr_3zoj/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_ef7b5218-b619-11ef-88f6-0242ac1200026pcaa4rc/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpbkr_3zoj/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_ef7b5218-b619-11ef-88f6-0242ac1200026pcaa4rc/parcellation_warped.nii.gz
2024-12-09 10:41:21,329 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
2024-12-09 10:41:22,820 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpsva8rd29/test.sqlite (multiple output)>
2024-12-09 10:41:23,000 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2024-12-09 10:41:23,000 - JUNIFER - INFO - Computing VBM_GM
2024-12-09 10:41:23,000 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2024-12-09 10:41:23,001 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-12-09 10:41:23,001 - JUNIFER - INFO - Parcellation parameters:
2024-12-09 10:41:23,001 - JUNIFER - INFO - resolution: None
2024-12-09 10:41:23,001 - JUNIFER - INFO - n_rois: 1000
2024-12-09 10:41:23,001 - JUNIFER - INFO - yeo_networks: 7
2024-12-09 10:41:23,001 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2024-12-09 10:41:23,003 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2024-12-09 10:41:23,281 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-12-09 10:41:24,399 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
2024-12-09 10:41:24,908 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpbkr_3zoj/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_224b793e-b61a-11ef-88f6-0242ac120002km07z6zw/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpbkr_3zoj/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_224b793e-b61a-11ef-88f6-0242ac120002km07z6zw/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpbkr_3zoj/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_224b793e-b61a-11ef-88f6-0242ac120002km07z6zw/parcellation_warped.nii.gz
2024-12-09 10:42:46,699 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
2024-12-09 10:42:48,205 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpsva8rd29/test.sqlite (multiple output)>
2024-12-09 10:42:48,387 - JUNIFER - INFO - Marker collection fitting done
2024-12-09 10:42:48,394 - JUNIFER - INFO - Getting element sub-02
2024-12-09 10:42:48,394 - JUNIFER - INFO - Fitting pipeline
2024-12-09 10:42:48,394 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0002_MR1/mwrc1OAS1_0002_MR1_mpr_anon_fslswapdim_bet.nii.gz
2024-12-09 10:42:48,394 - JUNIFER - INFO - VBM_GM is of type NIFTI
2024-12-09 10:42:48,395 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2024-12-09 10:42:48,395 - JUNIFER - INFO - Computing VBM_GM
2024-12-09 10:42:48,395 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2024-12-09 10:42:48,395 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-12-09 10:42:48,395 - JUNIFER - INFO - Parcellation parameters:
2024-12-09 10:42:48,395 - JUNIFER - INFO - resolution: None
2024-12-09 10:42:48,396 - JUNIFER - INFO - n_rois: 1000
2024-12-09 10:42:48,396 - JUNIFER - INFO - yeo_networks: 7
2024-12-09 10:42:48,396 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2024-12-09 10:42:48,398 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2024-12-09 10:42:48,677 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-12-09 10:42:49,776 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
2024-12-09 10:42:50,288 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpy2g3bryt/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_5531c498-b61a-11ef-88f6-0242ac1200021l4rd7ze/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpy2g3bryt/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_5531c498-b61a-11ef-88f6-0242ac1200021l4rd7ze/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpy2g3bryt/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_5531c498-b61a-11ef-88f6-0242ac1200021l4rd7ze/parcellation_warped.nii.gz
2024-12-09 10:44:11,693 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
2024-12-09 10:44:13,233 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpsva8rd29/test.sqlite (multiple output)>
2024-12-09 10:44:13,408 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2024-12-09 10:44:13,408 - JUNIFER - INFO - Computing VBM_GM
2024-12-09 10:44:13,408 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2024-12-09 10:44:13,408 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-12-09 10:44:13,408 - JUNIFER - INFO - Parcellation parameters:
2024-12-09 10:44:13,408 - JUNIFER - INFO - resolution: None
2024-12-09 10:44:13,409 - JUNIFER - INFO - n_rois: 1000
2024-12-09 10:44:13,409 - JUNIFER - INFO - yeo_networks: 7
2024-12-09 10:44:13,409 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2024-12-09 10:44:13,411 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2024-12-09 10:44:13,689 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-12-09 10:44:14,802 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
2024-12-09 10:44:15,316 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpy2g3bryt/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_87dda312-b61a-11ef-88f6-0242ac120002xepawbhp/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpy2g3bryt/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_87dda312-b61a-11ef-88f6-0242ac120002xepawbhp/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpy2g3bryt/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_87dda312-b61a-11ef-88f6-0242ac120002xepawbhp/parcellation_warped.nii.gz
2024-12-09 10:45:36,769 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
2024-12-09 10:45:38,313 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpsva8rd29/test.sqlite (multiple output)>
2024-12-09 10:45:38,497 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2024-12-09 10:45:38,497 - JUNIFER - INFO - Computing VBM_GM
2024-12-09 10:45:38,497 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2024-12-09 10:45:38,497 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-12-09 10:45:38,497 - JUNIFER - INFO - Parcellation parameters:
2024-12-09 10:45:38,497 - JUNIFER - INFO - resolution: None
2024-12-09 10:45:38,497 - JUNIFER - INFO - n_rois: 1000
2024-12-09 10:45:38,497 - JUNIFER - INFO - yeo_networks: 7
2024-12-09 10:45:38,497 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2024-12-09 10:45:38,500 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2024-12-09 10:45:38,781 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-12-09 10:45:39,902 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
2024-12-09 10:45:40,414 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpy2g3bryt/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_ba958202-b61a-11ef-88f6-0242ac120002ntpj1rtk/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpy2g3bryt/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_ba958202-b61a-11ef-88f6-0242ac120002ntpj1rtk/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpy2g3bryt/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_ba958202-b61a-11ef-88f6-0242ac120002ntpj1rtk/parcellation_warped.nii.gz
2024-12-09 10:47:01,359 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
2024-12-09 10:47:02,980 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpsva8rd29/test.sqlite (multiple output)>
2024-12-09 10:47:03,170 - JUNIFER - INFO - Marker collection fitting done
2024-12-09 10:47:03,177 - JUNIFER - INFO - Getting element sub-03
2024-12-09 10:47:03,177 - JUNIFER - INFO - Fitting pipeline
2024-12-09 10:47:03,177 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0003_MR1/mwrc1OAS1_0003_MR1_mpr_anon_fslswapdim_bet.nii.gz
2024-12-09 10:47:03,177 - JUNIFER - INFO - VBM_GM is of type NIFTI
2024-12-09 10:47:03,178 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2024-12-09 10:47:03,179 - JUNIFER - INFO - Computing VBM_GM
2024-12-09 10:47:03,179 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2024-12-09 10:47:03,179 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-12-09 10:47:03,179 - JUNIFER - INFO - Parcellation parameters:
2024-12-09 10:47:03,179 - JUNIFER - INFO - resolution: None
2024-12-09 10:47:03,179 - JUNIFER - INFO - n_rois: 1000
2024-12-09 10:47:03,179 - JUNIFER - INFO - yeo_networks: 7
2024-12-09 10:47:03,179 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2024-12-09 10:47:03,181 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2024-12-09 10:47:03,461 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-12-09 10:47:04,610 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
2024-12-09 10:47:05,119 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpch_d02gx/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_ed0ecd60-b61a-11ef-88f6-0242ac120002n90bi0uz/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpch_d02gx/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_ed0ecd60-b61a-11ef-88f6-0242ac120002n90bi0uz/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpch_d02gx/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_ed0ecd60-b61a-11ef-88f6-0242ac120002n90bi0uz/parcellation_warped.nii.gz
2024-12-09 10:48:26,999 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
2024-12-09 10:48:28,548 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpsva8rd29/test.sqlite (multiple output)>
2024-12-09 10:48:28,722 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2024-12-09 10:48:28,722 - JUNIFER - INFO - Computing VBM_GM
2024-12-09 10:48:28,722 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2024-12-09 10:48:28,722 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-12-09 10:48:28,722 - JUNIFER - INFO - Parcellation parameters:
2024-12-09 10:48:28,722 - JUNIFER - INFO - resolution: None
2024-12-09 10:48:28,722 - JUNIFER - INFO - n_rois: 1000
2024-12-09 10:48:28,722 - JUNIFER - INFO - yeo_networks: 7
2024-12-09 10:48:28,722 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2024-12-09 10:48:28,724 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2024-12-09 10:48:29,002 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-12-09 10:48:30,137 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
2024-12-09 10:48:30,649 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpch_d02gx/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_200b4ca2-b61b-11ef-88f6-0242ac120002fkx4lk85/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpch_d02gx/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_200b4ca2-b61b-11ef-88f6-0242ac120002fkx4lk85/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpch_d02gx/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_200b4ca2-b61b-11ef-88f6-0242ac120002fkx4lk85/parcellation_warped.nii.gz
2024-12-09 10:49:52,153 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
2024-12-09 10:49:53,652 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpsva8rd29/test.sqlite (multiple output)>
2024-12-09 10:49:53,829 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2024-12-09 10:49:53,829 - JUNIFER - INFO - Computing VBM_GM
2024-12-09 10:49:53,829 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2024-12-09 10:49:53,829 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-12-09 10:49:53,829 - JUNIFER - INFO - Parcellation parameters:
2024-12-09 10:49:53,829 - JUNIFER - INFO - resolution: None
2024-12-09 10:49:53,829 - JUNIFER - INFO - n_rois: 1000
2024-12-09 10:49:53,829 - JUNIFER - INFO - yeo_networks: 7
2024-12-09 10:49:53,829 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2024-12-09 10:49:53,831 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2024-12-09 10:49:54,109 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-12-09 10:49:55,222 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
2024-12-09 10:49:55,732 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpch_d02gx/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_52c5b8e4-b61b-11ef-88f6-0242ac1200026k8y0641/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpch_d02gx/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_52c5b8e4-b61b-11ef-88f6-0242ac1200026k8y0641/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpch_d02gx/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_52c5b8e4-b61b-11ef-88f6-0242ac1200026k8y0641/parcellation_warped.nii.gz
2024-12-09 10:51:17,717 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
2024-12-09 10:51:19,312 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpsva8rd29/test.sqlite (multiple output)>
2024-12-09 10:51:19,497 - JUNIFER - INFO - Marker collection fitting done
2024-12-09 10:51:19,504 - JUNIFER - INFO - Getting element sub-04
2024-12-09 10:51:19,504 - JUNIFER - INFO - Fitting pipeline
2024-12-09 10:51:19,504 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0004_MR1/mwrc1OAS1_0004_MR1_mpr_anon_fslswapdim_bet.nii.gz
2024-12-09 10:51:19,504 - JUNIFER - INFO - VBM_GM is of type NIFTI
2024-12-09 10:51:19,505 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2024-12-09 10:51:19,505 - JUNIFER - INFO - Computing VBM_GM
2024-12-09 10:51:19,505 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2024-12-09 10:51:19,506 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-12-09 10:51:19,506 - JUNIFER - INFO - Parcellation parameters:
2024-12-09 10:51:19,506 - JUNIFER - INFO - resolution: None
2024-12-09 10:51:19,506 - JUNIFER - INFO - n_rois: 1000
2024-12-09 10:51:19,506 - JUNIFER - INFO - yeo_networks: 7
2024-12-09 10:51:19,506 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2024-12-09 10:51:19,508 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2024-12-09 10:51:19,787 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-12-09 10:51:20,907 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
2024-12-09 10:51:21,419 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpbe3roxd8/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_85d7021a-b61b-11ef-88f6-0242ac120002bkikiqst/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpbe3roxd8/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_85d7021a-b61b-11ef-88f6-0242ac120002bkikiqst/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpbe3roxd8/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_85d7021a-b61b-11ef-88f6-0242ac120002bkikiqst/parcellation_warped.nii.gz
2024-12-09 10:52:43,040 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
2024-12-09 10:52:44,529 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpsva8rd29/test.sqlite (multiple output)>
2024-12-09 10:52:44,705 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2024-12-09 10:52:44,705 - JUNIFER - INFO - Computing VBM_GM
2024-12-09 10:52:44,705 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2024-12-09 10:52:44,705 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-12-09 10:52:44,705 - JUNIFER - INFO - Parcellation parameters:
2024-12-09 10:52:44,705 - JUNIFER - INFO - resolution: None
2024-12-09 10:52:44,705 - JUNIFER - INFO - n_rois: 1000
2024-12-09 10:52:44,705 - JUNIFER - INFO - yeo_networks: 7
2024-12-09 10:52:44,705 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2024-12-09 10:52:44,708 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2024-12-09 10:52:44,986 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-12-09 10:52:46,068 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
2024-12-09 10:52:46,576 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpbe3roxd8/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_b89f5990-b61b-11ef-88f6-0242ac120002qwsuf9vn/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpbe3roxd8/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_b89f5990-b61b-11ef-88f6-0242ac120002qwsuf9vn/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpbe3roxd8/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_b89f5990-b61b-11ef-88f6-0242ac120002qwsuf9vn/parcellation_warped.nii.gz
2024-12-09 10:54:08,216 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
2024-12-09 10:54:09,680 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpsva8rd29/test.sqlite (multiple output)>
2024-12-09 10:54:09,855 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2024-12-09 10:54:09,855 - JUNIFER - INFO - Computing VBM_GM
2024-12-09 10:54:09,855 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2024-12-09 10:54:09,855 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-12-09 10:54:09,855 - JUNIFER - INFO - Parcellation parameters:
2024-12-09 10:54:09,855 - JUNIFER - INFO - resolution: None
2024-12-09 10:54:09,855 - JUNIFER - INFO - n_rois: 1000
2024-12-09 10:54:09,855 - JUNIFER - INFO - yeo_networks: 7
2024-12-09 10:54:09,855 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2024-12-09 10:54:09,857 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2024-12-09 10:54:10,137 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-12-09 10:54:11,208 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
2024-12-09 10:54:11,718 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpbe3roxd8/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_eb606f40-b61b-11ef-88f6-0242ac120002wuqjqeoe/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpbe3roxd8/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_eb606f40-b61b-11ef-88f6-0242ac120002wuqjqeoe/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpbe3roxd8/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_eb606f40-b61b-11ef-88f6-0242ac120002wuqjqeoe/parcellation_warped.nii.gz
2024-12-09 10:55:33,540 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
2024-12-09 10:55:35,021 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpsva8rd29/test.sqlite (multiple output)>
2024-12-09 10:55:35,204 - JUNIFER - INFO - Marker collection fitting done
2024-12-09 10:55:35,211 - JUNIFER - INFO - Getting element sub-05
2024-12-09 10:55:35,211 - JUNIFER - INFO - Fitting pipeline
2024-12-09 10:55:35,211 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0005_MR1/mwrc1OAS1_0005_MR1_mpr_anon_fslswapdim_bet.nii.gz
2024-12-09 10:55:35,211 - JUNIFER - INFO - VBM_GM is of type NIFTI
2024-12-09 10:55:35,212 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2024-12-09 10:55:35,212 - JUNIFER - INFO - Computing VBM_GM
2024-12-09 10:55:35,212 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2024-12-09 10:55:35,212 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-12-09 10:55:35,212 - JUNIFER - INFO - Parcellation parameters:
2024-12-09 10:55:35,213 - JUNIFER - INFO - resolution: None
2024-12-09 10:55:35,213 - JUNIFER - INFO - n_rois: 1000
2024-12-09 10:55:35,213 - JUNIFER - INFO - yeo_networks: 7
2024-12-09 10:55:35,213 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2024-12-09 10:55:35,215 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2024-12-09 10:55:35,493 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-12-09 10:55:36,562 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
2024-12-09 10:55:37,070 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp3fo6i7vj/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_1e40bba4-b61c-11ef-88f6-0242ac120002osxx3be6/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp3fo6i7vj/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_1e40bba4-b61c-11ef-88f6-0242ac120002osxx3be6/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmp3fo6i7vj/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_1e40bba4-b61c-11ef-88f6-0242ac120002osxx3be6/parcellation_warped.nii.gz
2024-12-09 10:56:59,361 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
2024-12-09 10:57:00,845 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpsva8rd29/test.sqlite (multiple output)>
2024-12-09 10:57:01,018 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2024-12-09 10:57:01,018 - JUNIFER - INFO - Computing VBM_GM
2024-12-09 10:57:01,018 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2024-12-09 10:57:01,018 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-12-09 10:57:01,018 - JUNIFER - INFO - Parcellation parameters:
2024-12-09 10:57:01,018 - JUNIFER - INFO - resolution: None
2024-12-09 10:57:01,018 - JUNIFER - INFO - n_rois: 1000
2024-12-09 10:57:01,018 - JUNIFER - INFO - yeo_networks: 7
2024-12-09 10:57:01,018 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2024-12-09 10:57:01,020 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2024-12-09 10:57:01,301 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-12-09 10:57:02,383 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
2024-12-09 10:57:02,893 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp3fo6i7vj/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_5165ef40-b61c-11ef-88f6-0242ac120002blth7z2_/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp3fo6i7vj/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_5165ef40-b61c-11ef-88f6-0242ac120002blth7z2_/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmp3fo6i7vj/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_5165ef40-b61c-11ef-88f6-0242ac120002blth7z2_/parcellation_warped.nii.gz
2024-12-09 10:58:24,922 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
2024-12-09 10:58:26,456 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpsva8rd29/test.sqlite (multiple output)>
2024-12-09 10:58:26,634 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2024-12-09 10:58:26,634 - JUNIFER - INFO - Computing VBM_GM
2024-12-09 10:58:26,634 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2024-12-09 10:58:26,635 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-12-09 10:58:26,635 - JUNIFER - INFO - Parcellation parameters:
2024-12-09 10:58:26,635 - JUNIFER - INFO - resolution: None
2024-12-09 10:58:26,635 - JUNIFER - INFO - n_rois: 1000
2024-12-09 10:58:26,635 - JUNIFER - INFO - yeo_networks: 7
2024-12-09 10:58:26,635 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2024-12-09 10:58:26,637 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2024-12-09 10:58:26,918 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-12-09 10:58:27,997 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
2024-12-09 10:58:28,507 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp3fo6i7vj/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_846e0292-b61c-11ef-88f6-0242ac120002opaex3l_/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp3fo6i7vj/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_846e0292-b61c-11ef-88f6-0242ac120002opaex3l_/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmp3fo6i7vj/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_846e0292-b61c-11ef-88f6-0242ac120002opaex3l_/parcellation_warped.nii.gz
2024-12-09 10:59:50,157 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
2024-12-09 10:59:51,628 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpsva8rd29/test.sqlite (multiple output)>
2024-12-09 10:59:51,808 - JUNIFER - INFO - Marker collection fitting done
2024-12-09 10:59:51,815 - JUNIFER - INFO - Getting element sub-06
2024-12-09 10:59:51,815 - JUNIFER - INFO - Fitting pipeline
2024-12-09 10:59:51,815 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0006_MR1/mwrc1OAS1_0006_MR1_mpr_anon_fslswapdim_bet.nii.gz
2024-12-09 10:59:51,815 - JUNIFER - INFO - VBM_GM is of type NIFTI
2024-12-09 10:59:51,816 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2024-12-09 10:59:51,816 - JUNIFER - INFO - Computing VBM_GM
2024-12-09 10:59:51,816 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2024-12-09 10:59:51,816 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-12-09 10:59:51,817 - JUNIFER - INFO - Parcellation parameters:
2024-12-09 10:59:51,817 - JUNIFER - INFO - resolution: None
2024-12-09 10:59:51,817 - JUNIFER - INFO - n_rois: 1000
2024-12-09 10:59:51,817 - JUNIFER - INFO - yeo_networks: 7
2024-12-09 10:59:51,817 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2024-12-09 10:59:51,819 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2024-12-09 10:59:52,099 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-12-09 10:59:53,158 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
2024-12-09 10:59:53,667 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpjsgn39rt/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_b7339bce-b61c-11ef-88f6-0242ac120002y_k6mggi/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpjsgn39rt/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_b7339bce-b61c-11ef-88f6-0242ac120002y_k6mggi/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpjsgn39rt/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_b7339bce-b61c-11ef-88f6-0242ac120002y_k6mggi/parcellation_warped.nii.gz
2024-12-09 11:01:15,495 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
2024-12-09 11:01:17,010 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpsva8rd29/test.sqlite (multiple output)>
2024-12-09 11:01:17,181 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2024-12-09 11:01:17,182 - JUNIFER - INFO - Computing VBM_GM
2024-12-09 11:01:17,182 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2024-12-09 11:01:17,182 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-12-09 11:01:17,182 - JUNIFER - INFO - Parcellation parameters:
2024-12-09 11:01:17,182 - JUNIFER - INFO - resolution: None
2024-12-09 11:01:17,182 - JUNIFER - INFO - n_rois: 1000
2024-12-09 11:01:17,182 - JUNIFER - INFO - yeo_networks: 7
2024-12-09 11:01:17,182 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2024-12-09 11:01:17,184 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2024-12-09 11:01:17,466 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-12-09 11:01:18,532 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
2024-12-09 11:01:19,040 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpjsgn39rt/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_ea157a9e-b61c-11ef-88f6-0242ac120002t8pkh27e/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpjsgn39rt/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_ea157a9e-b61c-11ef-88f6-0242ac120002t8pkh27e/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpjsgn39rt/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_ea157a9e-b61c-11ef-88f6-0242ac120002t8pkh27e/parcellation_warped.nii.gz
2024-12-09 11:02:41,090 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
2024-12-09 11:02:42,562 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpsva8rd29/test.sqlite (multiple output)>
2024-12-09 11:02:42,740 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2024-12-09 11:02:42,740 - JUNIFER - INFO - Computing VBM_GM
2024-12-09 11:02:42,740 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2024-12-09 11:02:42,740 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-12-09 11:02:42,740 - JUNIFER - INFO - Parcellation parameters:
2024-12-09 11:02:42,740 - JUNIFER - INFO - resolution: None
2024-12-09 11:02:42,740 - JUNIFER - INFO - n_rois: 1000
2024-12-09 11:02:42,740 - JUNIFER - INFO - yeo_networks: 7
2024-12-09 11:02:42,740 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2024-12-09 11:02:42,742 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2024-12-09 11:02:43,021 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-12-09 11:02:44,108 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
2024-12-09 11:02:44,618 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpjsgn39rt/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_1d145b68-b61d-11ef-88f6-0242ac120002_kamd3y_/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpjsgn39rt/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_1d145b68-b61d-11ef-88f6-0242ac120002_kamd3y_/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpjsgn39rt/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_1d145b68-b61d-11ef-88f6-0242ac120002_kamd3y_/parcellation_warped.nii.gz
2024-12-09 11:04:06,458 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
2024-12-09 11:04:07,985 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpsva8rd29/test.sqlite (multiple output)>
2024-12-09 11:04:08,162 - JUNIFER - INFO - Marker collection fitting done
2024-12-09 11:04:08,169 - JUNIFER - INFO - Getting element sub-07
2024-12-09 11:04:08,169 - JUNIFER - INFO - Fitting pipeline
2024-12-09 11:04:08,169 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0007_MR1/mwrc1OAS1_0007_MR1_mpr_anon_fslswapdim_bet.nii.gz
2024-12-09 11:04:08,169 - JUNIFER - INFO - VBM_GM is of type NIFTI
2024-12-09 11:04:08,170 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2024-12-09 11:04:08,170 - JUNIFER - INFO - Computing VBM_GM
2024-12-09 11:04:08,171 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2024-12-09 11:04:08,171 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-12-09 11:04:08,171 - JUNIFER - INFO - Parcellation parameters:
2024-12-09 11:04:08,171 - JUNIFER - INFO - resolution: None
2024-12-09 11:04:08,171 - JUNIFER - INFO - n_rois: 1000
2024-12-09 11:04:08,171 - JUNIFER - INFO - yeo_networks: 7
2024-12-09 11:04:08,171 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2024-12-09 11:04:08,173 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2024-12-09 11:04:08,454 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-12-09 11:04:09,518 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
2024-12-09 11:04:10,026 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp_w1rlhio/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_50005626-b61d-11ef-88f6-0242ac120002qjh5udmx/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp_w1rlhio/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_50005626-b61d-11ef-88f6-0242ac120002qjh5udmx/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmp_w1rlhio/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_50005626-b61d-11ef-88f6-0242ac120002qjh5udmx/parcellation_warped.nii.gz
2024-12-09 11:05:31,802 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
2024-12-09 11:05:33,310 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpsva8rd29/test.sqlite (multiple output)>
2024-12-09 11:05:33,483 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2024-12-09 11:05:33,483 - JUNIFER - INFO - Computing VBM_GM
2024-12-09 11:05:33,483 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2024-12-09 11:05:33,483 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-12-09 11:05:33,483 - JUNIFER - INFO - Parcellation parameters:
2024-12-09 11:05:33,483 - JUNIFER - INFO - resolution: None
2024-12-09 11:05:33,484 - JUNIFER - INFO - n_rois: 1000
2024-12-09 11:05:33,484 - JUNIFER - INFO - yeo_networks: 7
2024-12-09 11:05:33,484 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2024-12-09 11:05:33,486 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2024-12-09 11:05:33,765 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-12-09 11:05:34,830 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
2024-12-09 11:05:35,341 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp_w1rlhio/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_82d9b2ea-b61d-11ef-88f6-0242ac120002supet5fm/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp_w1rlhio/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_82d9b2ea-b61d-11ef-88f6-0242ac120002supet5fm/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmp_w1rlhio/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_82d9b2ea-b61d-11ef-88f6-0242ac120002supet5fm/parcellation_warped.nii.gz
2024-12-09 11:06:57,498 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
2024-12-09 11:06:59,081 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpsva8rd29/test.sqlite (multiple output)>
2024-12-09 11:06:59,258 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2024-12-09 11:06:59,259 - JUNIFER - INFO - Computing VBM_GM
2024-12-09 11:06:59,259 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2024-12-09 11:06:59,259 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-12-09 11:06:59,259 - JUNIFER - INFO - Parcellation parameters:
2024-12-09 11:06:59,259 - JUNIFER - INFO - resolution: None
2024-12-09 11:06:59,259 - JUNIFER - INFO - n_rois: 1000
2024-12-09 11:06:59,259 - JUNIFER - INFO - yeo_networks: 7
2024-12-09 11:06:59,259 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2024-12-09 11:06:59,261 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2024-12-09 11:06:59,543 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-12-09 11:07:00,634 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
2024-12-09 11:07:01,143 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp_w1rlhio/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_b5fa6192-b61d-11ef-88f6-0242ac120002f6c7u83o/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp_w1rlhio/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_b5fa6192-b61d-11ef-88f6-0242ac120002f6c7u83o/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmp_w1rlhio/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_b5fa6192-b61d-11ef-88f6-0242ac120002f6c7u83o/parcellation_warped.nii.gz
2024-12-09 11:08:23,579 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
2024-12-09 11:08:25,147 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpsva8rd29/test.sqlite (multiple output)>
2024-12-09 11:08:25,325 - JUNIFER - INFO - Marker collection fitting done
2024-12-09 11:08:25,332 - JUNIFER - INFO - Getting element sub-08
2024-12-09 11:08:25,333 - JUNIFER - INFO - Fitting pipeline
2024-12-09 11:08:25,333 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0009_MR1/mwrc1OAS1_0009_MR1_mpr_anon_fslswapdim_bet.nii.gz
2024-12-09 11:08:25,333 - JUNIFER - INFO - VBM_GM is of type NIFTI
2024-12-09 11:08:25,334 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2024-12-09 11:08:25,334 - JUNIFER - INFO - Computing VBM_GM
2024-12-09 11:08:25,334 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2024-12-09 11:08:25,334 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-12-09 11:08:25,334 - JUNIFER - INFO - Parcellation parameters:
2024-12-09 11:08:25,334 - JUNIFER - INFO - resolution: None
2024-12-09 11:08:25,334 - JUNIFER - INFO - n_rois: 1000
2024-12-09 11:08:25,334 - JUNIFER - INFO - yeo_networks: 7
2024-12-09 11:08:25,334 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2024-12-09 11:08:25,336 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2024-12-09 11:08:25,618 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-12-09 11:08:26,702 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
2024-12-09 11:08:27,212 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpjlz3nw7w/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_e9485a18-b61d-11ef-88f6-0242ac120002xyxjsv6c/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpjlz3nw7w/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_e9485a18-b61d-11ef-88f6-0242ac120002xyxjsv6c/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpjlz3nw7w/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_e9485a18-b61d-11ef-88f6-0242ac120002xyxjsv6c/parcellation_warped.nii.gz
2024-12-09 11:09:50,166 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
2024-12-09 11:09:51,811 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpsva8rd29/test.sqlite (multiple output)>
2024-12-09 11:09:51,985 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2024-12-09 11:09:51,985 - JUNIFER - INFO - Computing VBM_GM
2024-12-09 11:09:51,985 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2024-12-09 11:09:51,986 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-12-09 11:09:51,986 - JUNIFER - INFO - Parcellation parameters:
2024-12-09 11:09:51,986 - JUNIFER - INFO - resolution: None
2024-12-09 11:09:51,986 - JUNIFER - INFO - n_rois: 1000
2024-12-09 11:09:51,986 - JUNIFER - INFO - yeo_networks: 7
2024-12-09 11:09:51,986 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2024-12-09 11:09:51,988 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2024-12-09 11:09:52,271 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-12-09 11:09:53,369 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
2024-12-09 11:09:53,878 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpjlz3nw7w/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_1cee8d10-b61e-11ef-88f6-0242ac120002_6tcrm22/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpjlz3nw7w/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_1cee8d10-b61e-11ef-88f6-0242ac120002_6tcrm22/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpjlz3nw7w/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_1cee8d10-b61e-11ef-88f6-0242ac120002_6tcrm22/parcellation_warped.nii.gz
2024-12-09 11:11:16,450 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
2024-12-09 11:11:18,027 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpsva8rd29/test.sqlite (multiple output)>
2024-12-09 11:11:18,206 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2024-12-09 11:11:18,206 - JUNIFER - INFO - Computing VBM_GM
2024-12-09 11:11:18,207 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2024-12-09 11:11:18,207 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-12-09 11:11:18,207 - JUNIFER - INFO - Parcellation parameters:
2024-12-09 11:11:18,207 - JUNIFER - INFO - resolution: None
2024-12-09 11:11:18,207 - JUNIFER - INFO - n_rois: 1000
2024-12-09 11:11:18,207 - JUNIFER - INFO - yeo_networks: 7
2024-12-09 11:11:18,207 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2024-12-09 11:11:18,209 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2024-12-09 11:11:18,490 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-12-09 11:11:19,582 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
2024-12-09 11:11:20,107 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpjlz3nw7w/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_50528fbc-b61e-11ef-88f6-0242ac1200024dvo6sdf/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpjlz3nw7w/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_50528fbc-b61e-11ef-88f6-0242ac1200024dvo6sdf/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpjlz3nw7w/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_50528fbc-b61e-11ef-88f6-0242ac1200024dvo6sdf/parcellation_warped.nii.gz
2024-12-09 11:12:42,056 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
2024-12-09 11:12:43,680 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpsva8rd29/test.sqlite (multiple output)>
2024-12-09 11:12:43,860 - JUNIFER - INFO - Marker collection fitting done
2024-12-09 11:12:43,867 - JUNIFER - INFO - Getting element sub-09
2024-12-09 11:12:43,867 - JUNIFER - INFO - Fitting pipeline
2024-12-09 11:12:43,867 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0010_MR1/mwrc1OAS1_0010_MR1_mpr_anon_fslswapdim_bet.nii.gz
2024-12-09 11:12:43,867 - JUNIFER - INFO - VBM_GM is of type NIFTI
2024-12-09 11:12:43,868 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2024-12-09 11:12:43,869 - JUNIFER - INFO - Computing VBM_GM
2024-12-09 11:12:43,869 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2024-12-09 11:12:43,869 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-12-09 11:12:43,869 - JUNIFER - INFO - Parcellation parameters:
2024-12-09 11:12:43,869 - JUNIFER - INFO - resolution: None
2024-12-09 11:12:43,869 - JUNIFER - INFO - n_rois: 1000
2024-12-09 11:12:43,869 - JUNIFER - INFO - yeo_networks: 7
2024-12-09 11:12:43,869 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2024-12-09 11:12:43,871 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2024-12-09 11:12:44,151 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-12-09 11:12:45,251 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
2024-12-09 11:12:45,760 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmplpv1vmji/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_83616216-b61e-11ef-88f6-0242ac120002981ltoqw/prewarp_parcellation.nii.gz -r /tmp/junifer/tmplpv1vmji/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_83616216-b61e-11ef-88f6-0242ac120002981ltoqw/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmplpv1vmji/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_83616216-b61e-11ef-88f6-0242ac120002981ltoqw/parcellation_warped.nii.gz
2024-12-09 11:14:07,690 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
2024-12-09 11:14:09,238 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpsva8rd29/test.sqlite (multiple output)>
2024-12-09 11:14:09,412 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2024-12-09 11:14:09,412 - JUNIFER - INFO - Computing VBM_GM
2024-12-09 11:14:09,412 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2024-12-09 11:14:09,412 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-12-09 11:14:09,412 - JUNIFER - INFO - Parcellation parameters:
2024-12-09 11:14:09,412 - JUNIFER - INFO - resolution: None
2024-12-09 11:14:09,412 - JUNIFER - INFO - n_rois: 1000
2024-12-09 11:14:09,412 - JUNIFER - INFO - yeo_networks: 7
2024-12-09 11:14:09,412 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2024-12-09 11:14:09,415 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2024-12-09 11:14:09,696 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-12-09 11:14:10,771 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
2024-12-09 11:14:11,281 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmplpv1vmji/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_b65e80c2-b61e-11ef-88f6-0242ac120002gueihjk8/prewarp_parcellation.nii.gz -r /tmp/junifer/tmplpv1vmji/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_b65e80c2-b61e-11ef-88f6-0242ac120002gueihjk8/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmplpv1vmji/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_b65e80c2-b61e-11ef-88f6-0242ac120002gueihjk8/parcellation_warped.nii.gz
2024-12-09 11:15:33,572 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
2024-12-09 11:15:35,124 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpsva8rd29/test.sqlite (multiple output)>
2024-12-09 11:15:35,312 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2024-12-09 11:15:35,312 - JUNIFER - INFO - Computing VBM_GM
2024-12-09 11:15:35,312 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2024-12-09 11:15:35,312 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-12-09 11:15:35,312 - JUNIFER - INFO - Parcellation parameters:
2024-12-09 11:15:35,312 - JUNIFER - INFO - resolution: None
2024-12-09 11:15:35,312 - JUNIFER - INFO - n_rois: 1000
2024-12-09 11:15:35,313 - JUNIFER - INFO - yeo_networks: 7
2024-12-09 11:15:35,313 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2024-12-09 11:15:35,315 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2024-12-09 11:15:35,594 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-12-09 11:15:36,671 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
2024-12-09 11:15:37,180 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmplpv1vmji/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_e991956a-b61e-11ef-88f6-0242ac120002oel4ceky/prewarp_parcellation.nii.gz -r /tmp/junifer/tmplpv1vmji/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_e991956a-b61e-11ef-88f6-0242ac120002oel4ceky/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmplpv1vmji/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_e991956a-b61e-11ef-88f6-0242ac120002oel4ceky/parcellation_warped.nii.gz
2024-12-09 11:16:59,107 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
2024-12-09 11:17:00,677 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpsva8rd29/test.sqlite (multiple output)>
2024-12-09 11:17:00,855 - JUNIFER - INFO - Marker collection fitting done
2024-12-09 11:17:00,863 - JUNIFER - INFO - Getting element sub-10
2024-12-09 11:17:00,863 - JUNIFER - INFO - Fitting pipeline
2024-12-09 11:17:00,863 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0011_MR1/mwrc1OAS1_0011_MR1_mpr_anon_fslswapdim_bet.nii.gz
2024-12-09 11:17:00,863 - JUNIFER - INFO - VBM_GM is of type NIFTI
2024-12-09 11:17:00,864 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2024-12-09 11:17:00,864 - JUNIFER - INFO - Computing VBM_GM
2024-12-09 11:17:00,864 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2024-12-09 11:17:00,864 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-12-09 11:17:00,864 - JUNIFER - INFO - Parcellation parameters:
2024-12-09 11:17:00,864 - JUNIFER - INFO - resolution: None
2024-12-09 11:17:00,864 - JUNIFER - INFO - n_rois: 1000
2024-12-09 11:17:00,864 - JUNIFER - INFO - yeo_networks: 7
2024-12-09 11:17:00,864 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2024-12-09 11:17:00,867 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2024-12-09 11:17:01,147 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-12-09 11:17:02,251 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
2024-12-09 11:17:02,760 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpdamzyz3s/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_1c8ff362-b61f-11ef-88f6-0242ac120002x952ak8n/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpdamzyz3s/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_1c8ff362-b61f-11ef-88f6-0242ac120002x952ak8n/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpdamzyz3s/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_1c8ff362-b61f-11ef-88f6-0242ac120002x952ak8n/parcellation_warped.nii.gz
2024-12-09 11:18:25,162 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
2024-12-09 11:18:26,822 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpsva8rd29/test.sqlite (multiple output)>
2024-12-09 11:18:26,997 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2024-12-09 11:18:26,997 - JUNIFER - INFO - Computing VBM_GM
2024-12-09 11:18:26,997 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2024-12-09 11:18:26,997 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-12-09 11:18:26,997 - JUNIFER - INFO - Parcellation parameters:
2024-12-09 11:18:26,997 - JUNIFER - INFO - resolution: None
2024-12-09 11:18:26,997 - JUNIFER - INFO - n_rois: 1000
2024-12-09 11:18:26,997 - JUNIFER - INFO - yeo_networks: 7
2024-12-09 11:18:26,997 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2024-12-09 11:18:27,000 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2024-12-09 11:18:27,281 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-12-09 11:18:28,394 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
2024-12-09 11:18:28,904 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpdamzyz3s/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_4fe6cc22-b61f-11ef-88f6-0242ac120002yy7si0vt/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpdamzyz3s/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_4fe6cc22-b61f-11ef-88f6-0242ac120002yy7si0vt/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpdamzyz3s/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_4fe6cc22-b61f-11ef-88f6-0242ac120002yy7si0vt/parcellation_warped.nii.gz
2024-12-09 11:19:50,396 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
2024-12-09 11:19:52,036 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpsva8rd29/test.sqlite (multiple output)>
2024-12-09 11:19:52,216 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2024-12-09 11:19:52,216 - JUNIFER - INFO - Computing VBM_GM
2024-12-09 11:19:52,216 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution
2024-12-09 11:19:52,216 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-12-09 11:19:52,216 - JUNIFER - INFO - Parcellation parameters:
2024-12-09 11:19:52,216 - JUNIFER - INFO - resolution: None
2024-12-09 11:19:52,216 - JUNIFER - INFO - n_rois: 1000
2024-12-09 11:19:52,216 - JUNIFER - INFO - yeo_networks: 7
2024-12-09 11:19:52,216 - JUNIFER - INFO - Resolution set to None, using highest resolution.
2024-12-09 11:19:52,218 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_1mm.nii.gz
2024-12-09 11:19:52,499 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-12-09 11:19:53,609 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1
2024-12-09 11:19:54,119 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpdamzyz3s/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_82b220e8-b61f-11ef-88f6-0242ac120002eudzc2wp/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpdamzyz3s/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_82b220e8-b61f-11ef-88f6-0242ac120002eudzc2wp/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpdamzyz3s/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_82b220e8-b61f-11ef-88f6-0242ac120002eudzc2wp/parcellation_warped.nii.gz
2024-12-09 11:21:16,211 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
2024-12-09 11:21:17,719 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpsva8rd29/test.sqlite (multiple output)>
2024-12-09 11:21:17,897 - JUNIFER - INFO - Marker collection fitting done
import tempfile
import junifer.testing.registry # noqa: F401
from junifer.api import run
datagrabber = {
"kind": "OasisVBMTestingDataGrabber",
}
markers = [
{
"name": "Schaefer1000x7_TrimMean80",
"kind": "ParcelAggregation",
"parcellation": "Schaefer1000x7",
"method": "trim_mean",
"method_params": {"proportiontocut": 0.2},
},
{
"name": "Schaefer1000x7_Mean",
"kind": "ParcelAggregation",
"parcellation": "Schaefer1000x7",
"method": "mean",
},
{
"name": "Schaefer1000x7_Std",
"kind": "ParcelAggregation",
"parcellation": "Schaefer1000x7",
"method": "std",
},
]
storage = {
"kind": "SQLiteFeatureStorage",
}
with tempfile.TemporaryDirectory() as tmpdir:
uri = f"{tmpdir}/test.sqlite"
storage["uri"] = uri
run(
workdir="/tmp",
datagrabber=datagrabber,
markers=markers,
storage=storage,
)
Total running time of the script: (43 minutes 23.522 seconds)