.. DO NOT EDIT. .. THIS FILE WAS AUTOMATICALLY GENERATED BY SPHINX-GALLERY. .. TO MAKE CHANGES, EDIT THE SOURCE PYTHON FILE: .. "auto_examples/run_junifer_julearn.py" .. LINE NUMBERS ARE GIVEN BELOW. .. only:: html .. note:: :class: sphx-glr-download-link-note :ref:`Go to the end ` to download the full example code. .. rst-class:: sphx-glr-example-title .. _sphx_glr_auto_examples_run_junifer_julearn.py: Run junifer and julearn. ======================== This example uses a ParcelAggregation marker to compute the mean of each parcel using the Schaefer parcellation (100 rois, 7 Yeo networks) for a 3D nifti to extract some features for machine learning using julearn to predict some other data. Authors: Leonard Sasse, Sami Hamdan, Nicolas Nieto, Synchon Mandal License: BSD 3 clause .. GENERATED FROM PYTHON SOURCE LINES 14-27 .. code-block:: Python import tempfile import nilearn import pandas as pd from julearn import run_cross_validation, PipelineCreator import junifer.testing.registry # noqa: F401 from junifer.api import collect, run from junifer.storage.sqlite import SQLiteFeatureStorage from junifer.utils import configure_logging .. GENERATED FROM PYTHON SOURCE LINES 28-29 Set the logging level to info to see extra information: .. GENERATED FROM PYTHON SOURCE LINES 29-32 .. code-block:: Python configure_logging(level="INFO") .. rst-class:: sphx-glr-script-out .. code-block:: none /__w/junifer/junifer/junifer/utils/logging.py:193: UserWarning: The '__version__' attribute is deprecated and will be removed in MarkupSafe 3.1. Use feature detection, or `importlib.metadata.version("markupsafe")`, instead. vstring = str(getattr(module, "__version__", None)) 2024-12-09 11:22:40,160 - JUNIFER - INFO - ===== Lib Versions ===== 2024-12-09 11:22:40,160 - JUNIFER - INFO - numpy: 1.26.4 2024-12-09 11:22:40,160 - JUNIFER - INFO - scipy: 1.14.1 2024-12-09 11:22:40,160 - JUNIFER - INFO - pandas: 2.1.4 2024-12-09 11:22:40,160 - JUNIFER - INFO - nilearn: 0.10.4 2024-12-09 11:22:40,160 - JUNIFER - INFO - nibabel: 5.3.2 2024-12-09 11:22:40,160 - JUNIFER - INFO - junifer: 0.0.6.dev366 2024-12-09 11:22:40,160 - JUNIFER - INFO - ======================== .. GENERATED FROM PYTHON SOURCE LINES 33-34 Define the markers you want: .. GENERATED FROM PYTHON SOURCE LINES 34-52 .. code-block:: Python marker_dicts = [ { "name": "Schaefer100x17_TrimMean80", "kind": "ParcelAggregation", "parcellation": "Schaefer100x17", "method": "trim_mean", "method_params": {"proportiontocut": 0.2}, }, { "name": "Schaefer200x17_Mean", "kind": "ParcelAggregation", "parcellation": "Schaefer200x17", "method": "mean", }, ] .. GENERATED FROM PYTHON SOURCE LINES 53-54 Define target and confounds for julearn machine learning: .. GENERATED FROM PYTHON SOURCE LINES 54-58 .. code-block:: Python y = "age" confound = "sex" .. GENERATED FROM PYTHON SOURCE LINES 59-61 Load the VBM phenotype data for machine learning data: - Fetch the Oasis dataset .. GENERATED FROM PYTHON SOURCE LINES 61-70 .. code-block:: Python oasis_dataset = nilearn.datasets.fetch_oasis_vbm() age = oasis_dataset.ext_vars[y][:10] sex = ( pd.Series(oasis_dataset.ext_vars["mf"][:10]) .map(lambda x: 1 if x == "F" else 0) .values ) .. GENERATED FROM PYTHON SOURCE LINES 71-72 Create a temporary directory for junifer feature extraction: .. GENERATED FROM PYTHON SOURCE LINES 72-92 .. code-block:: Python with tempfile.TemporaryDirectory() as tmpdir: storage = {"kind": "SQLiteFeatureStorage", "uri": f"{tmpdir}/test.sqlite"} # run the defined junifer feature extraction pipeline run( workdir="/tmp", datagrabber={"kind": "OasisVBMTestingDataGrabber"}, markers=marker_dicts, storage=storage, ) # read in extracted features and add confounds and targets # for julearn run cross validation collect(storage) db = SQLiteFeatureStorage(uri=storage["uri"]) df_vbm = db.read_df(feature_name="VBM_GM_Schaefer200x17_Mean_aggregation") oasis_subjects = [x[0] for x in df_vbm.index] df_vbm.index = oasis_subjects .. rst-class:: sphx-glr-script-out .. code-block:: none 2024-12-09 11:22:40,178 - JUNIFER - INFO - Validating Marker Collection 2024-12-09 11:22:40,178 - JUNIFER - INFO - DataGrabber output type: ['VBM_GM'] 2024-12-09 11:22:40,178 - JUNIFER - INFO - Validating Data Reader: 2024-12-09 11:22:40,178 - JUNIFER - INFO - Data Reader output type: ['VBM_GM'] 2024-12-09 11:22:40,178 - JUNIFER - INFO - Validating Marker: Schaefer100x17_TrimMean80 2024-12-09 11:22:40,178 - JUNIFER - INFO - Marker output type: ['vector'] 2024-12-09 11:22:40,178 - JUNIFER - INFO - Validating storage for Schaefer100x17_TrimMean80 2024-12-09 11:22:40,178 - JUNIFER - INFO - Validating Marker: Schaefer200x17_Mean 2024-12-09 11:22:40,178 - JUNIFER - INFO - Marker output type: ['vector'] 2024-12-09 11:22:40,178 - JUNIFER - INFO - Validating storage for Schaefer200x17_Mean 2024-12-09 11:22:40,183 - JUNIFER - INFO - Getting element sub-01 2024-12-09 11:22:40,183 - JUNIFER - INFO - Fitting pipeline 2024-12-09 11:22:40,183 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0001_MR1/mwrc1OAS1_0001_MR1_mpr_anon_fslswapdim_bet.nii.gz 2024-12-09 11:22:40,183 - JUNIFER - INFO - VBM_GM is of type NIFTI 2024-12-09 11:22:40,184 - JUNIFER - INFO - Fitting marker Schaefer100x17_TrimMean80 2024-12-09 11:22:40,184 - JUNIFER - INFO - Computing VBM_GM 2024-12-09 11:22:40,184 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2024-12-09 11:22:40,184 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2024-12-09 11:22:40,184 - JUNIFER - INFO - Parcellation parameters: 2024-12-09 11:22:40,184 - JUNIFER - INFO - resolution: None 2024-12-09 11:22:40,184 - JUNIFER - INFO - n_rois: 100 2024-12-09 11:22:40,184 - JUNIFER - INFO - yeo_networks: 17 2024-12-09 11:22:40,184 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2024-12-09 11:22:40,186 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_100Parcels_17Networks_order_FSLMNI152_1mm.nii.gz 2024-12-09 11:22:40,453 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 2024-12-09 11:22:41,548 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1 2024-12-09 11:22:42,050 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmptrzf6355/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_e6cde6e8-b61f-11ef-88f6-0242ac120002o4bdgu9f/prewarp_parcellation.nii.gz -r /tmp/junifer/tmptrzf6355/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_e6cde6e8-b61f-11ef-88f6-0242ac120002o4bdgu9f/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmptrzf6355/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_e6cde6e8-b61f-11ef-88f6-0242ac120002o4bdgu9f/parcellation_warped.nii.gz 2024-12-09 11:22:51,016 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2024-12-09 11:22:52,337 - JUNIFER - INFO - Storing in 2024-12-09 11:22:52,376 - JUNIFER - INFO - Fitting marker Schaefer200x17_Mean 2024-12-09 11:22:52,376 - JUNIFER - INFO - Computing VBM_GM 2024-12-09 11:22:52,376 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2024-12-09 11:22:52,377 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2024-12-09 11:22:52,377 - JUNIFER - INFO - Parcellation parameters: 2024-12-09 11:22:52,377 - JUNIFER - INFO - resolution: None 2024-12-09 11:22:52,377 - JUNIFER - INFO - n_rois: 200 2024-12-09 11:22:52,377 - JUNIFER - INFO - yeo_networks: 17 2024-12-09 11:22:52,377 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2024-12-09 11:22:52,378 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_200Parcels_17Networks_order_FSLMNI152_1mm.nii.gz 2024-12-09 11:22:52,649 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 2024-12-09 11:22:53,741 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1 2024-12-09 11:22:54,245 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmptrzf6355/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_ee12ee6c-b61f-11ef-88f6-0242ac120002155ajtw4/prewarp_parcellation.nii.gz -r /tmp/junifer/tmptrzf6355/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_ee12ee6c-b61f-11ef-88f6-0242ac120002155ajtw4/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmptrzf6355/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_ee12ee6c-b61f-11ef-88f6-0242ac120002155ajtw4/parcellation_warped.nii.gz 2024-12-09 11:23:11,073 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2024-12-09 11:23:12,424 - JUNIFER - INFO - Storing in 2024-12-09 11:23:12,481 - JUNIFER - INFO - Marker collection fitting done 2024-12-09 11:23:12,485 - JUNIFER - INFO - Getting element sub-02 2024-12-09 11:23:12,485 - JUNIFER - INFO - Fitting pipeline 2024-12-09 11:23:12,485 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0002_MR1/mwrc1OAS1_0002_MR1_mpr_anon_fslswapdim_bet.nii.gz 2024-12-09 11:23:12,485 - JUNIFER - INFO - VBM_GM is of type NIFTI 2024-12-09 11:23:12,486 - JUNIFER - INFO - Fitting marker Schaefer100x17_TrimMean80 2024-12-09 11:23:12,486 - JUNIFER - INFO - Computing VBM_GM 2024-12-09 11:23:12,486 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2024-12-09 11:23:12,486 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2024-12-09 11:23:12,487 - JUNIFER - INFO - Parcellation parameters: 2024-12-09 11:23:12,487 - JUNIFER - INFO - resolution: None 2024-12-09 11:23:12,487 - JUNIFER - INFO - n_rois: 100 2024-12-09 11:23:12,487 - JUNIFER - INFO - yeo_networks: 17 2024-12-09 11:23:12,487 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2024-12-09 11:23:12,488 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_100Parcels_17Networks_order_FSLMNI152_1mm.nii.gz 2024-12-09 11:23:12,757 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 2024-12-09 11:23:13,841 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1 2024-12-09 11:23:14,343 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp913enx2v/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_fa0f1114-b61f-11ef-88f6-0242ac120002okhpfna5/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp913enx2v/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_fa0f1114-b61f-11ef-88f6-0242ac120002okhpfna5/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmp913enx2v/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_fa0f1114-b61f-11ef-88f6-0242ac120002okhpfna5/parcellation_warped.nii.gz 2024-12-09 11:23:23,323 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2024-12-09 11:23:24,842 - JUNIFER - INFO - Storing in 2024-12-09 11:23:24,879 - JUNIFER - INFO - Fitting marker Schaefer200x17_Mean 2024-12-09 11:23:24,879 - JUNIFER - INFO - Computing VBM_GM 2024-12-09 11:23:24,879 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2024-12-09 11:23:24,879 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2024-12-09 11:23:24,879 - JUNIFER - INFO - Parcellation parameters: 2024-12-09 11:23:24,879 - JUNIFER - INFO - resolution: None 2024-12-09 11:23:24,879 - JUNIFER - INFO - n_rois: 200 2024-12-09 11:23:24,879 - JUNIFER - INFO - yeo_networks: 17 2024-12-09 11:23:24,879 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2024-12-09 11:23:24,881 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_200Parcels_17Networks_order_FSLMNI152_1mm.nii.gz 2024-12-09 11:23:25,153 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 2024-12-09 11:23:26,287 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1 2024-12-09 11:23:26,791 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp913enx2v/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_017294da-b620-11ef-88f6-0242ac120002c2i2dgr2/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp913enx2v/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_017294da-b620-11ef-88f6-0242ac120002c2i2dgr2/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmp913enx2v/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_017294da-b620-11ef-88f6-0242ac120002c2i2dgr2/parcellation_warped.nii.gz 2024-12-09 11:23:43,520 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2024-12-09 11:23:44,948 - JUNIFER - INFO - Storing in 2024-12-09 11:23:45,005 - JUNIFER - INFO - Marker collection fitting done 2024-12-09 11:23:45,011 - JUNIFER - INFO - Getting element sub-03 2024-12-09 11:23:45,011 - JUNIFER - INFO - Fitting pipeline 2024-12-09 11:23:45,011 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0003_MR1/mwrc1OAS1_0003_MR1_mpr_anon_fslswapdim_bet.nii.gz 2024-12-09 11:23:45,011 - JUNIFER - INFO - VBM_GM is of type NIFTI 2024-12-09 11:23:45,012 - JUNIFER - INFO - Fitting marker Schaefer100x17_TrimMean80 2024-12-09 11:23:45,012 - JUNIFER - INFO - Computing VBM_GM 2024-12-09 11:23:45,012 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2024-12-09 11:23:45,012 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2024-12-09 11:23:45,012 - JUNIFER - INFO - Parcellation parameters: 2024-12-09 11:23:45,012 - JUNIFER - INFO - resolution: None 2024-12-09 11:23:45,012 - JUNIFER - INFO - n_rois: 100 2024-12-09 11:23:45,013 - JUNIFER - INFO - yeo_networks: 17 2024-12-09 11:23:45,013 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2024-12-09 11:23:45,014 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_100Parcels_17Networks_order_FSLMNI152_1mm.nii.gz 2024-12-09 11:23:45,284 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 2024-12-09 11:23:46,390 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1 2024-12-09 11:23:46,891 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpanolnzk4/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_0d7252de-b620-11ef-88f6-0242ac120002l_4v982_/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpanolnzk4/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_0d7252de-b620-11ef-88f6-0242ac120002l_4v982_/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpanolnzk4/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_0d7252de-b620-11ef-88f6-0242ac120002l_4v982_/parcellation_warped.nii.gz 2024-12-09 11:23:55,782 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2024-12-09 11:23:57,203 - JUNIFER - INFO - Storing in 2024-12-09 11:23:57,238 - JUNIFER - INFO - Fitting marker Schaefer200x17_Mean 2024-12-09 11:23:57,238 - JUNIFER - INFO - Computing VBM_GM 2024-12-09 11:23:57,238 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2024-12-09 11:23:57,238 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2024-12-09 11:23:57,239 - JUNIFER - INFO - Parcellation parameters: 2024-12-09 11:23:57,239 - JUNIFER - INFO - resolution: None 2024-12-09 11:23:57,239 - JUNIFER - INFO - n_rois: 200 2024-12-09 11:23:57,239 - JUNIFER - INFO - yeo_networks: 17 2024-12-09 11:23:57,239 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2024-12-09 11:23:57,240 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_200Parcels_17Networks_order_FSLMNI152_1mm.nii.gz 2024-12-09 11:23:57,512 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 2024-12-09 11:23:58,637 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1 2024-12-09 11:23:59,142 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpanolnzk4/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_14bc149e-b620-11ef-88f6-0242ac1200023tp41rzg/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpanolnzk4/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_14bc149e-b620-11ef-88f6-0242ac1200023tp41rzg/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpanolnzk4/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_14bc149e-b620-11ef-88f6-0242ac1200023tp41rzg/parcellation_warped.nii.gz 2024-12-09 11:24:16,156 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2024-12-09 11:24:17,640 - JUNIFER - INFO - Storing in 2024-12-09 11:24:17,695 - JUNIFER - INFO - Marker collection fitting done 2024-12-09 11:24:17,700 - JUNIFER - INFO - Getting element sub-04 2024-12-09 11:24:17,700 - JUNIFER - INFO - Fitting pipeline 2024-12-09 11:24:17,700 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0004_MR1/mwrc1OAS1_0004_MR1_mpr_anon_fslswapdim_bet.nii.gz 2024-12-09 11:24:17,700 - JUNIFER - INFO - VBM_GM is of type NIFTI 2024-12-09 11:24:17,701 - JUNIFER - INFO - Fitting marker Schaefer100x17_TrimMean80 2024-12-09 11:24:17,701 - JUNIFER - INFO - Computing VBM_GM 2024-12-09 11:24:17,701 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2024-12-09 11:24:17,701 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2024-12-09 11:24:17,701 - JUNIFER - INFO - Parcellation parameters: 2024-12-09 11:24:17,701 - JUNIFER - INFO - resolution: None 2024-12-09 11:24:17,701 - JUNIFER - INFO - n_rois: 100 2024-12-09 11:24:17,701 - JUNIFER - INFO - yeo_networks: 17 2024-12-09 11:24:17,701 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2024-12-09 11:24:17,703 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_100Parcels_17Networks_order_FSLMNI152_1mm.nii.gz 2024-12-09 11:24:17,973 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 2024-12-09 11:24:19,095 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1 2024-12-09 11:24:19,596 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpqinjpo_4/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_20ee2964-b620-11ef-88f6-0242ac120002mqsz7ye8/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpqinjpo_4/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_20ee2964-b620-11ef-88f6-0242ac120002mqsz7ye8/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpqinjpo_4/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_20ee2964-b620-11ef-88f6-0242ac120002mqsz7ye8/parcellation_warped.nii.gz 2024-12-09 11:24:28,582 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2024-12-09 11:24:29,927 - JUNIFER - INFO - Storing in 2024-12-09 11:24:29,962 - JUNIFER - INFO - Fitting marker Schaefer200x17_Mean 2024-12-09 11:24:29,962 - JUNIFER - INFO - Computing VBM_GM 2024-12-09 11:24:29,962 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2024-12-09 11:24:29,962 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2024-12-09 11:24:29,962 - JUNIFER - INFO - Parcellation parameters: 2024-12-09 11:24:29,963 - JUNIFER - INFO - resolution: None 2024-12-09 11:24:29,963 - JUNIFER - INFO - n_rois: 200 2024-12-09 11:24:29,963 - JUNIFER - INFO - yeo_networks: 17 2024-12-09 11:24:29,963 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2024-12-09 11:24:29,964 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_200Parcels_17Networks_order_FSLMNI152_1mm.nii.gz 2024-12-09 11:24:30,234 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 2024-12-09 11:24:31,332 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1 2024-12-09 11:24:31,836 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpqinjpo_4/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_283d29e0-b620-11ef-88f6-0242ac120002v7dht4ty/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpqinjpo_4/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_283d29e0-b620-11ef-88f6-0242ac120002v7dht4ty/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpqinjpo_4/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_283d29e0-b620-11ef-88f6-0242ac120002v7dht4ty/parcellation_warped.nii.gz 2024-12-09 11:24:48,779 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2024-12-09 11:24:50,221 - JUNIFER - INFO - Storing in 2024-12-09 11:24:50,275 - JUNIFER - INFO - Marker collection fitting done 2024-12-09 11:24:50,280 - JUNIFER - INFO - Getting element sub-05 2024-12-09 11:24:50,280 - JUNIFER - INFO - Fitting pipeline 2024-12-09 11:24:50,280 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0005_MR1/mwrc1OAS1_0005_MR1_mpr_anon_fslswapdim_bet.nii.gz 2024-12-09 11:24:50,280 - JUNIFER - INFO - VBM_GM is of type NIFTI 2024-12-09 11:24:50,281 - JUNIFER - INFO - Fitting marker Schaefer100x17_TrimMean80 2024-12-09 11:24:50,281 - JUNIFER - INFO - Computing VBM_GM 2024-12-09 11:24:50,282 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2024-12-09 11:24:50,282 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2024-12-09 11:24:50,282 - JUNIFER - INFO - Parcellation parameters: 2024-12-09 11:24:50,282 - JUNIFER - INFO - resolution: None 2024-12-09 11:24:50,282 - JUNIFER - INFO - n_rois: 100 2024-12-09 11:24:50,282 - JUNIFER - INFO - yeo_networks: 17 2024-12-09 11:24:50,282 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2024-12-09 11:24:50,283 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_100Parcels_17Networks_order_FSLMNI152_1mm.nii.gz 2024-12-09 11:24:50,554 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 2024-12-09 11:24:51,683 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1 2024-12-09 11:24:52,184 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpa55hfcjz/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_3459aaaa-b620-11ef-88f6-0242ac120002h6wihm1m/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpa55hfcjz/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_3459aaaa-b620-11ef-88f6-0242ac120002h6wihm1m/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpa55hfcjz/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_3459aaaa-b620-11ef-88f6-0242ac120002h6wihm1m/parcellation_warped.nii.gz 2024-12-09 11:25:01,181 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2024-12-09 11:25:02,524 - JUNIFER - INFO - Storing in 2024-12-09 11:25:02,558 - JUNIFER - INFO - Fitting marker Schaefer200x17_Mean 2024-12-09 11:25:02,558 - JUNIFER - INFO - Computing VBM_GM 2024-12-09 11:25:02,558 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2024-12-09 11:25:02,558 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2024-12-09 11:25:02,558 - JUNIFER - INFO - Parcellation parameters: 2024-12-09 11:25:02,558 - JUNIFER - INFO - resolution: None 2024-12-09 11:25:02,558 - JUNIFER - INFO - n_rois: 200 2024-12-09 11:25:02,558 - JUNIFER - INFO - yeo_networks: 17 2024-12-09 11:25:02,558 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2024-12-09 11:25:02,560 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_200Parcels_17Networks_order_FSLMNI152_1mm.nii.gz 2024-12-09 11:25:02,831 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 2024-12-09 11:25:03,934 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1 2024-12-09 11:25:04,436 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpa55hfcjz/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_3bab13f2-b620-11ef-88f6-0242ac120002_o5qbuix/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpa55hfcjz/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_3bab13f2-b620-11ef-88f6-0242ac120002_o5qbuix/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpa55hfcjz/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_3bab13f2-b620-11ef-88f6-0242ac120002_o5qbuix/parcellation_warped.nii.gz 2024-12-09 11:25:21,433 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2024-12-09 11:25:22,800 - JUNIFER - INFO - Storing in 2024-12-09 11:25:22,852 - JUNIFER - INFO - Marker collection fitting done 2024-12-09 11:25:22,857 - JUNIFER - INFO - Getting element sub-06 2024-12-09 11:25:22,857 - JUNIFER - INFO - Fitting pipeline 2024-12-09 11:25:22,858 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0006_MR1/mwrc1OAS1_0006_MR1_mpr_anon_fslswapdim_bet.nii.gz 2024-12-09 11:25:22,858 - JUNIFER - INFO - VBM_GM is of type NIFTI 2024-12-09 11:25:22,858 - JUNIFER - INFO - Fitting marker Schaefer100x17_TrimMean80 2024-12-09 11:25:22,859 - JUNIFER - INFO - Computing VBM_GM 2024-12-09 11:25:22,859 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2024-12-09 11:25:22,859 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2024-12-09 11:25:22,859 - JUNIFER - INFO - Parcellation parameters: 2024-12-09 11:25:22,859 - JUNIFER - INFO - resolution: None 2024-12-09 11:25:22,859 - JUNIFER - INFO - n_rois: 100 2024-12-09 11:25:22,859 - JUNIFER - INFO - yeo_networks: 17 2024-12-09 11:25:22,859 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2024-12-09 11:25:22,860 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_100Parcels_17Networks_order_FSLMNI152_1mm.nii.gz 2024-12-09 11:25:23,128 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 2024-12-09 11:25:24,210 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1 2024-12-09 11:25:24,710 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpimwqxecl/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_47c42ec6-b620-11ef-88f6-0242ac120002dfb0btfk/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpimwqxecl/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_47c42ec6-b620-11ef-88f6-0242ac120002dfb0btfk/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpimwqxecl/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_47c42ec6-b620-11ef-88f6-0242ac120002dfb0btfk/parcellation_warped.nii.gz 2024-12-09 11:25:33,759 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2024-12-09 11:25:35,161 - JUNIFER - INFO - Storing in 2024-12-09 11:25:35,199 - JUNIFER - INFO - Fitting marker Schaefer200x17_Mean 2024-12-09 11:25:35,199 - JUNIFER - INFO - Computing VBM_GM 2024-12-09 11:25:35,199 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2024-12-09 11:25:35,199 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2024-12-09 11:25:35,199 - JUNIFER - INFO - Parcellation parameters: 2024-12-09 11:25:35,200 - JUNIFER - INFO - resolution: None 2024-12-09 11:25:35,200 - JUNIFER - INFO - n_rois: 200 2024-12-09 11:25:35,200 - JUNIFER - INFO - yeo_networks: 17 2024-12-09 11:25:35,200 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2024-12-09 11:25:35,201 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_200Parcels_17Networks_order_FSLMNI152_1mm.nii.gz 2024-12-09 11:25:35,473 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 2024-12-09 11:25:36,556 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1 2024-12-09 11:25:37,062 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpimwqxecl/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_4f1fe1ec-b620-11ef-88f6-0242ac120002aqvv9q2s/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpimwqxecl/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_4f1fe1ec-b620-11ef-88f6-0242ac120002aqvv9q2s/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpimwqxecl/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_4f1fe1ec-b620-11ef-88f6-0242ac120002aqvv9q2s/parcellation_warped.nii.gz 2024-12-09 11:25:53,962 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2024-12-09 11:25:55,344 - JUNIFER - INFO - Storing in 2024-12-09 11:25:55,398 - JUNIFER - INFO - Marker collection fitting done 2024-12-09 11:25:55,403 - JUNIFER - INFO - Getting element sub-07 2024-12-09 11:25:55,403 - JUNIFER - INFO - Fitting pipeline 2024-12-09 11:25:55,403 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0007_MR1/mwrc1OAS1_0007_MR1_mpr_anon_fslswapdim_bet.nii.gz 2024-12-09 11:25:55,403 - JUNIFER - INFO - VBM_GM is of type NIFTI 2024-12-09 11:25:55,404 - JUNIFER - INFO - Fitting marker Schaefer100x17_TrimMean80 2024-12-09 11:25:55,404 - JUNIFER - INFO - Computing VBM_GM 2024-12-09 11:25:55,404 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2024-12-09 11:25:55,404 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2024-12-09 11:25:55,404 - JUNIFER - INFO - Parcellation parameters: 2024-12-09 11:25:55,404 - JUNIFER - INFO - resolution: None 2024-12-09 11:25:55,404 - JUNIFER - INFO - n_rois: 100 2024-12-09 11:25:55,404 - JUNIFER - INFO - yeo_networks: 17 2024-12-09 11:25:55,404 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2024-12-09 11:25:55,406 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_100Parcels_17Networks_order_FSLMNI152_1mm.nii.gz 2024-12-09 11:25:55,675 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 2024-12-09 11:25:56,805 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1 2024-12-09 11:25:57,307 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpbplhhxpf/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_5b2a60de-b620-11ef-88f6-0242ac120002ja7_tdjg/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpbplhhxpf/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_5b2a60de-b620-11ef-88f6-0242ac120002ja7_tdjg/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpbplhhxpf/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_5b2a60de-b620-11ef-88f6-0242ac120002ja7_tdjg/parcellation_warped.nii.gz 2024-12-09 11:26:06,290 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2024-12-09 11:26:07,612 - JUNIFER - INFO - Storing in 2024-12-09 11:26:07,655 - JUNIFER - INFO - Fitting marker Schaefer200x17_Mean 2024-12-09 11:26:07,655 - JUNIFER - INFO - Computing VBM_GM 2024-12-09 11:26:07,655 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2024-12-09 11:26:07,655 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2024-12-09 11:26:07,655 - JUNIFER - INFO - Parcellation parameters: 2024-12-09 11:26:07,655 - JUNIFER - INFO - resolution: None 2024-12-09 11:26:07,655 - JUNIFER - INFO - n_rois: 200 2024-12-09 11:26:07,655 - JUNIFER - INFO - yeo_networks: 17 2024-12-09 11:26:07,655 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2024-12-09 11:26:07,657 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_200Parcels_17Networks_order_FSLMNI152_1mm.nii.gz 2024-12-09 11:26:07,928 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 2024-12-09 11:26:09,026 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1 2024-12-09 11:26:09,529 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpbplhhxpf/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_62781c6e-b620-11ef-88f6-0242ac120002lrm3v4fv/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpbplhhxpf/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_62781c6e-b620-11ef-88f6-0242ac120002lrm3v4fv/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpbplhhxpf/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_62781c6e-b620-11ef-88f6-0242ac120002lrm3v4fv/parcellation_warped.nii.gz 2024-12-09 11:26:26,408 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2024-12-09 11:26:27,742 - JUNIFER - INFO - Storing in 2024-12-09 11:26:27,793 - JUNIFER - INFO - Marker collection fitting done 2024-12-09 11:26:27,798 - JUNIFER - INFO - Getting element sub-08 2024-12-09 11:26:27,798 - JUNIFER - INFO - Fitting pipeline 2024-12-09 11:26:27,798 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0009_MR1/mwrc1OAS1_0009_MR1_mpr_anon_fslswapdim_bet.nii.gz 2024-12-09 11:26:27,798 - JUNIFER - INFO - VBM_GM is of type NIFTI 2024-12-09 11:26:27,799 - JUNIFER - INFO - Fitting marker Schaefer100x17_TrimMean80 2024-12-09 11:26:27,799 - JUNIFER - INFO - Computing VBM_GM 2024-12-09 11:26:27,799 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2024-12-09 11:26:27,799 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2024-12-09 11:26:27,799 - JUNIFER - INFO - Parcellation parameters: 2024-12-09 11:26:27,799 - JUNIFER - INFO - resolution: None 2024-12-09 11:26:27,799 - JUNIFER - INFO - n_rois: 100 2024-12-09 11:26:27,799 - JUNIFER - INFO - yeo_networks: 17 2024-12-09 11:26:27,799 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2024-12-09 11:26:27,801 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_100Parcels_17Networks_order_FSLMNI152_1mm.nii.gz 2024-12-09 11:26:28,069 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 2024-12-09 11:26:29,158 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1 2024-12-09 11:26:29,660 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp684jzjos/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_6e795d3e-b620-11ef-88f6-0242ac120002ch7zr6qq/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp684jzjos/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_6e795d3e-b620-11ef-88f6-0242ac120002ch7zr6qq/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmp684jzjos/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_6e795d3e-b620-11ef-88f6-0242ac120002ch7zr6qq/parcellation_warped.nii.gz 2024-12-09 11:26:38,673 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2024-12-09 11:26:40,048 - JUNIFER - INFO - Storing in 2024-12-09 11:26:40,083 - JUNIFER - INFO - Fitting marker Schaefer200x17_Mean 2024-12-09 11:26:40,083 - JUNIFER - INFO - Computing VBM_GM 2024-12-09 11:26:40,084 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2024-12-09 11:26:40,084 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2024-12-09 11:26:40,084 - JUNIFER - INFO - Parcellation parameters: 2024-12-09 11:26:40,084 - JUNIFER - INFO - resolution: None 2024-12-09 11:26:40,084 - JUNIFER - INFO - n_rois: 200 2024-12-09 11:26:40,084 - JUNIFER - INFO - yeo_networks: 17 2024-12-09 11:26:40,084 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2024-12-09 11:26:40,085 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_200Parcels_17Networks_order_FSLMNI152_1mm.nii.gz 2024-12-09 11:26:40,360 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 2024-12-09 11:26:41,455 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1 2024-12-09 11:26:41,959 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp684jzjos/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_75ccb7de-b620-11ef-88f6-0242ac120002kolvnzx9/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp684jzjos/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_75ccb7de-b620-11ef-88f6-0242ac120002kolvnzx9/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmp684jzjos/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_75ccb7de-b620-11ef-88f6-0242ac120002kolvnzx9/parcellation_warped.nii.gz 2024-12-09 11:26:58,803 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2024-12-09 11:27:00,181 - JUNIFER - INFO - Storing in 2024-12-09 11:27:00,233 - JUNIFER - INFO - Marker collection fitting done 2024-12-09 11:27:00,238 - JUNIFER - INFO - Getting element sub-09 2024-12-09 11:27:00,238 - JUNIFER - INFO - Fitting pipeline 2024-12-09 11:27:00,238 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0010_MR1/mwrc1OAS1_0010_MR1_mpr_anon_fslswapdim_bet.nii.gz 2024-12-09 11:27:00,238 - JUNIFER - INFO - VBM_GM is of type NIFTI 2024-12-09 11:27:00,239 - JUNIFER - INFO - Fitting marker Schaefer100x17_TrimMean80 2024-12-09 11:27:00,239 - JUNIFER - INFO - Computing VBM_GM 2024-12-09 11:27:00,240 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2024-12-09 11:27:00,240 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2024-12-09 11:27:00,240 - JUNIFER - INFO - Parcellation parameters: 2024-12-09 11:27:00,240 - JUNIFER - INFO - resolution: None 2024-12-09 11:27:00,240 - JUNIFER - INFO - n_rois: 100 2024-12-09 11:27:00,240 - JUNIFER - INFO - yeo_networks: 17 2024-12-09 11:27:00,240 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2024-12-09 11:27:00,241 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_100Parcels_17Networks_order_FSLMNI152_1mm.nii.gz 2024-12-09 11:27:00,511 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 2024-12-09 11:27:01,608 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1 2024-12-09 11:27:02,109 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpttqsp5a6/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_81cf9a74-b620-11ef-88f6-0242ac120002jj1s_rw2/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpttqsp5a6/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_81cf9a74-b620-11ef-88f6-0242ac120002jj1s_rw2/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpttqsp5a6/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_81cf9a74-b620-11ef-88f6-0242ac120002jj1s_rw2/parcellation_warped.nii.gz 2024-12-09 11:27:11,118 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2024-12-09 11:27:12,484 - JUNIFER - INFO - Storing in 2024-12-09 11:27:12,520 - JUNIFER - INFO - Fitting marker Schaefer200x17_Mean 2024-12-09 11:27:12,520 - JUNIFER - INFO - Computing VBM_GM 2024-12-09 11:27:12,520 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2024-12-09 11:27:12,520 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2024-12-09 11:27:12,521 - JUNIFER - INFO - Parcellation parameters: 2024-12-09 11:27:12,521 - JUNIFER - INFO - resolution: None 2024-12-09 11:27:12,521 - JUNIFER - INFO - n_rois: 200 2024-12-09 11:27:12,521 - JUNIFER - INFO - yeo_networks: 17 2024-12-09 11:27:12,521 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2024-12-09 11:27:12,522 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_200Parcels_17Networks_order_FSLMNI152_1mm.nii.gz 2024-12-09 11:27:12,792 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 2024-12-09 11:27:13,888 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1 2024-12-09 11:27:14,392 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpttqsp5a6/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_89217d10-b620-11ef-88f6-0242ac1200022q30sf42/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpttqsp5a6/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_89217d10-b620-11ef-88f6-0242ac1200022q30sf42/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpttqsp5a6/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_89217d10-b620-11ef-88f6-0242ac1200022q30sf42/parcellation_warped.nii.gz 2024-12-09 11:27:31,151 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2024-12-09 11:27:32,558 - JUNIFER - INFO - Storing in 2024-12-09 11:27:32,610 - JUNIFER - INFO - Marker collection fitting done 2024-12-09 11:27:32,614 - JUNIFER - INFO - Getting element sub-10 2024-12-09 11:27:32,614 - JUNIFER - INFO - Fitting pipeline 2024-12-09 11:27:32,614 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0011_MR1/mwrc1OAS1_0011_MR1_mpr_anon_fslswapdim_bet.nii.gz 2024-12-09 11:27:32,614 - JUNIFER - INFO - VBM_GM is of type NIFTI 2024-12-09 11:27:32,615 - JUNIFER - INFO - Fitting marker Schaefer100x17_TrimMean80 2024-12-09 11:27:32,615 - JUNIFER - INFO - Computing VBM_GM 2024-12-09 11:27:32,615 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2024-12-09 11:27:32,616 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2024-12-09 11:27:32,616 - JUNIFER - INFO - Parcellation parameters: 2024-12-09 11:27:32,616 - JUNIFER - INFO - resolution: None 2024-12-09 11:27:32,616 - JUNIFER - INFO - n_rois: 100 2024-12-09 11:27:32,616 - JUNIFER - INFO - yeo_networks: 17 2024-12-09 11:27:32,616 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2024-12-09 11:27:32,617 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_100Parcels_17Networks_order_FSLMNI152_1mm.nii.gz 2024-12-09 11:27:32,884 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 2024-12-09 11:27:34,004 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1 2024-12-09 11:27:34,506 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpq7yu977j/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_951b4b00-b620-11ef-88f6-0242ac120002xvnw0mtb/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpq7yu977j/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_951b4b00-b620-11ef-88f6-0242ac120002xvnw0mtb/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpq7yu977j/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_951b4b00-b620-11ef-88f6-0242ac120002xvnw0mtb/parcellation_warped.nii.gz 2024-12-09 11:27:43,478 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2024-12-09 11:27:44,807 - JUNIFER - INFO - Storing in 2024-12-09 11:27:44,845 - JUNIFER - INFO - Fitting marker Schaefer200x17_Mean 2024-12-09 11:27:44,845 - JUNIFER - INFO - Computing VBM_GM 2024-12-09 11:27:44,845 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2024-12-09 11:27:44,845 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2024-12-09 11:27:44,845 - JUNIFER - INFO - Parcellation parameters: 2024-12-09 11:27:44,845 - JUNIFER - INFO - resolution: None 2024-12-09 11:27:44,845 - JUNIFER - INFO - n_rois: 200 2024-12-09 11:27:44,845 - JUNIFER - INFO - yeo_networks: 17 2024-12-09 11:27:44,845 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2024-12-09 11:27:44,847 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_200Parcels_17Networks_order_FSLMNI152_1mm.nii.gz 2024-12-09 11:27:45,119 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 2024-12-09 11:27:46,241 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1 2024-12-09 11:27:46,743 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpq7yu977j/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_9c6633a2-b620-11ef-88f6-0242ac1200020_bfhccc/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpq7yu977j/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_9c6633a2-b620-11ef-88f6-0242ac1200020_bfhccc/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpq7yu977j/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_9c6633a2-b620-11ef-88f6-0242ac1200020_bfhccc/parcellation_warped.nii.gz 2024-12-09 11:28:03,526 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2024-12-09 11:28:04,994 - JUNIFER - INFO - Storing in 2024-12-09 11:28:05,048 - JUNIFER - INFO - Marker collection fitting done 2024-12-09 11:28:05,053 - JUNIFER - INFO - Collecting data using SQLiteFeatureStorage 2024-12-09 11:28:05,053 - JUNIFER - INFO - Collecting data from /tmp/tmpx7ckyojk/*test.sqlite file: 0it [00:00, ?it/s] feature: 0%| | 0/2 [00:00` .. container:: sphx-glr-download sphx-glr-download-python :download:`Download Python source code: run_junifer_julearn.py ` .. container:: sphx-glr-download sphx-glr-download-zip :download:`Download zipped: run_junifer_julearn.zip ` .. only:: html .. rst-class:: sphx-glr-signature `Gallery generated by Sphinx-Gallery `_