.. DO NOT EDIT. .. THIS FILE WAS AUTOMATICALLY GENERATED BY SPHINX-GALLERY. .. TO MAKE CHANGES, EDIT THE SOURCE PYTHON FILE: .. "auto_examples/run_junifer_julearn.py" .. LINE NUMBERS ARE GIVEN BELOW. .. only:: html .. note:: :class: sphx-glr-download-link-note :ref:`Go to the end ` to download the full example code. .. rst-class:: sphx-glr-example-title .. _sphx_glr_auto_examples_run_junifer_julearn.py: Run junifer and julearn. ======================== This example uses a ParcelAggregation marker to compute the mean of each parcel using the Schaefer parcellation (100 rois, 7 Yeo networks) for a 3D nifti to extract some features for machine learning using julearn to predict some other data. Authors: Leonard Sasse, Sami Hamdan, Nicolas Nieto, Synchon Mandal License: BSD 3 clause .. GENERATED FROM PYTHON SOURCE LINES 14-27 .. code-block:: Python import tempfile import nilearn import pandas as pd from julearn import run_cross_validation, PipelineCreator import junifer.testing.registry # noqa: F401 from junifer.api import collect, run from junifer.storage.sqlite import SQLiteFeatureStorage from junifer.utils import configure_logging .. GENERATED FROM PYTHON SOURCE LINES 28-29 Set the logging level to info to see extra information: .. GENERATED FROM PYTHON SOURCE LINES 29-32 .. code-block:: Python configure_logging(level="INFO") .. rst-class:: sphx-glr-script-out .. code-block:: none /__w/junifer/junifer/junifer/utils/logging.py:193: UserWarning: The '__version__' attribute is deprecated and will be removed in MarkupSafe 3.1. Use feature detection, or `importlib.metadata.version("markupsafe")`, instead. vstring = str(getattr(module, "__version__", None)) 2024-12-06 13:55:51,448 - JUNIFER - INFO - ===== Lib Versions ===== 2024-12-06 13:55:51,448 - JUNIFER - INFO - numpy: 1.26.4 2024-12-06 13:55:51,448 - JUNIFER - INFO - scipy: 1.14.1 2024-12-06 13:55:51,448 - JUNIFER - INFO - pandas: 2.1.4 2024-12-06 13:55:51,449 - JUNIFER - INFO - nilearn: 0.10.4 2024-12-06 13:55:51,449 - JUNIFER - INFO - nibabel: 5.3.2 2024-12-06 13:55:51,449 - JUNIFER - INFO - junifer: 0.0.6.dev358 2024-12-06 13:55:51,449 - JUNIFER - INFO - ======================== .. GENERATED FROM PYTHON SOURCE LINES 33-34 Define the markers you want: .. GENERATED FROM PYTHON SOURCE LINES 34-52 .. code-block:: Python marker_dicts = [ { "name": "Schaefer100x17_TrimMean80", "kind": "ParcelAggregation", "parcellation": "Schaefer100x17", "method": "trim_mean", "method_params": {"proportiontocut": 0.2}, }, { "name": "Schaefer200x17_Mean", "kind": "ParcelAggregation", "parcellation": "Schaefer200x17", "method": "mean", }, ] .. GENERATED FROM PYTHON SOURCE LINES 53-54 Define target and confounds for julearn machine learning: .. GENERATED FROM PYTHON SOURCE LINES 54-58 .. code-block:: Python y = "age" confound = "sex" .. GENERATED FROM PYTHON SOURCE LINES 59-61 Load the VBM phenotype data for machine learning data: - Fetch the Oasis dataset .. GENERATED FROM PYTHON SOURCE LINES 61-70 .. code-block:: Python oasis_dataset = nilearn.datasets.fetch_oasis_vbm() age = oasis_dataset.ext_vars[y][:10] sex = ( pd.Series(oasis_dataset.ext_vars["mf"][:10]) .map(lambda x: 1 if x == "F" else 0) .values ) .. GENERATED FROM PYTHON SOURCE LINES 71-72 Create a temporary directory for junifer feature extraction: .. GENERATED FROM PYTHON SOURCE LINES 72-92 .. code-block:: Python with tempfile.TemporaryDirectory() as tmpdir: storage = {"kind": "SQLiteFeatureStorage", "uri": f"{tmpdir}/test.sqlite"} # run the defined junifer feature extraction pipeline run( workdir="/tmp", datagrabber={"kind": "OasisVBMTestingDataGrabber"}, markers=marker_dicts, storage=storage, ) # read in extracted features and add confounds and targets # for julearn run cross validation collect(storage) db = SQLiteFeatureStorage(uri=storage["uri"]) df_vbm = db.read_df(feature_name="VBM_GM_Schaefer200x17_Mean_aggregation") oasis_subjects = [x[0] for x in df_vbm.index] df_vbm.index = oasis_subjects .. rst-class:: sphx-glr-script-out .. code-block:: none 2024-12-06 13:55:51,467 - JUNIFER - INFO - Validating Marker Collection 2024-12-06 13:55:51,467 - JUNIFER - INFO - DataGrabber output type: ['VBM_GM'] 2024-12-06 13:55:51,467 - JUNIFER - INFO - Validating Data Reader: 2024-12-06 13:55:51,467 - JUNIFER - INFO - Data Reader output type: ['VBM_GM'] 2024-12-06 13:55:51,467 - JUNIFER - INFO - Validating Marker: Schaefer100x17_TrimMean80 2024-12-06 13:55:51,468 - JUNIFER - INFO - Marker output type: ['vector'] 2024-12-06 13:55:51,468 - JUNIFER - INFO - Validating storage for Schaefer100x17_TrimMean80 2024-12-06 13:55:51,468 - JUNIFER - INFO - Validating Marker: Schaefer200x17_Mean 2024-12-06 13:55:51,468 - JUNIFER - INFO - Marker output type: ['vector'] 2024-12-06 13:55:51,468 - JUNIFER - INFO - Validating storage for Schaefer200x17_Mean 2024-12-06 13:55:51,473 - JUNIFER - INFO - Getting element sub-01 2024-12-06 13:55:51,473 - JUNIFER - INFO - Fitting pipeline 2024-12-06 13:55:51,473 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0001_MR1/mwrc1OAS1_0001_MR1_mpr_anon_fslswapdim_bet.nii.gz 2024-12-06 13:55:51,473 - JUNIFER - INFO - VBM_GM is of type NIFTI 2024-12-06 13:55:51,474 - JUNIFER - INFO - Fitting marker Schaefer100x17_TrimMean80 2024-12-06 13:55:51,474 - JUNIFER - INFO - Computing VBM_GM 2024-12-06 13:55:51,474 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2024-12-06 13:55:51,474 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2024-12-06 13:55:51,474 - JUNIFER - INFO - Parcellation parameters: 2024-12-06 13:55:51,474 - JUNIFER - INFO - resolution: None 2024-12-06 13:55:51,474 - JUNIFER - INFO - n_rois: 100 2024-12-06 13:55:51,474 - JUNIFER - INFO - yeo_networks: 17 2024-12-06 13:55:51,474 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2024-12-06 13:55:51,475 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_100Parcels_17Networks_order_FSLMNI152_1mm.nii.gz 2024-12-06 13:55:51,745 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 2024-12-06 13:55:52,894 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1 2024-12-06 13:55:53,397 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpv7a_mbrc/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_ce00597c-b3d9-11ef-9645-0242ac120002_z5e5oag/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpv7a_mbrc/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_ce00597c-b3d9-11ef-9645-0242ac120002_z5e5oag/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpv7a_mbrc/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_ce00597c-b3d9-11ef-9645-0242ac120002_z5e5oag/parcellation_warped.nii.gz 2024-12-06 13:56:02,420 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2024-12-06 13:56:03,846 - JUNIFER - INFO - Storing in 2024-12-06 13:56:03,881 - JUNIFER - INFO - Fitting marker Schaefer200x17_Mean 2024-12-06 13:56:03,881 - JUNIFER - INFO - Computing VBM_GM 2024-12-06 13:56:03,881 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2024-12-06 13:56:03,881 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2024-12-06 13:56:03,881 - JUNIFER - INFO - Parcellation parameters: 2024-12-06 13:56:03,881 - JUNIFER - INFO - resolution: None 2024-12-06 13:56:03,881 - JUNIFER - INFO - n_rois: 200 2024-12-06 13:56:03,881 - JUNIFER - INFO - yeo_networks: 17 2024-12-06 13:56:03,881 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2024-12-06 13:56:03,883 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_200Parcels_17Networks_order_FSLMNI152_1mm.nii.gz 2024-12-06 13:56:04,156 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 2024-12-06 13:56:05,301 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1 2024-12-06 13:56:05,805 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpv7a_mbrc/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_d56635ce-b3d9-11ef-9645-0242ac120002tc3a192z/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpv7a_mbrc/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_d56635ce-b3d9-11ef-9645-0242ac120002tc3a192z/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpv7a_mbrc/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_d56635ce-b3d9-11ef-9645-0242ac120002tc3a192z/parcellation_warped.nii.gz 2024-12-06 13:56:22,732 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2024-12-06 13:56:24,156 - JUNIFER - INFO - Storing in 2024-12-06 13:56:24,210 - JUNIFER - INFO - Marker collection fitting done 2024-12-06 13:56:24,214 - JUNIFER - INFO - Getting element sub-02 2024-12-06 13:56:24,214 - JUNIFER - INFO - Fitting pipeline 2024-12-06 13:56:24,214 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0002_MR1/mwrc1OAS1_0002_MR1_mpr_anon_fslswapdim_bet.nii.gz 2024-12-06 13:56:24,214 - JUNIFER - INFO - VBM_GM is of type NIFTI 2024-12-06 13:56:24,215 - JUNIFER - INFO - Fitting marker Schaefer100x17_TrimMean80 2024-12-06 13:56:24,215 - JUNIFER - INFO - Computing VBM_GM 2024-12-06 13:56:24,216 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2024-12-06 13:56:24,216 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2024-12-06 13:56:24,216 - JUNIFER - INFO - Parcellation parameters: 2024-12-06 13:56:24,216 - JUNIFER - INFO - resolution: None 2024-12-06 13:56:24,216 - JUNIFER - INFO - n_rois: 100 2024-12-06 13:56:24,216 - JUNIFER - INFO - yeo_networks: 17 2024-12-06 13:56:24,216 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2024-12-06 13:56:24,217 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_100Parcels_17Networks_order_FSLMNI152_1mm.nii.gz 2024-12-06 13:56:24,487 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 2024-12-06 13:56:25,627 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1 2024-12-06 13:56:26,130 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpetbimmax/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_e1847b90-b3d9-11ef-9645-0242ac120002acq9d33e/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpetbimmax/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_e1847b90-b3d9-11ef-9645-0242ac120002acq9d33e/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpetbimmax/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_e1847b90-b3d9-11ef-9645-0242ac120002acq9d33e/parcellation_warped.nii.gz 2024-12-06 13:56:35,162 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2024-12-06 13:56:36,580 - JUNIFER - INFO - Storing in 2024-12-06 13:56:36,615 - JUNIFER - INFO - Fitting marker Schaefer200x17_Mean 2024-12-06 13:56:36,616 - JUNIFER - INFO - Computing VBM_GM 2024-12-06 13:56:36,616 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2024-12-06 13:56:36,616 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2024-12-06 13:56:36,616 - JUNIFER - INFO - Parcellation parameters: 2024-12-06 13:56:36,616 - JUNIFER - INFO - resolution: None 2024-12-06 13:56:36,616 - JUNIFER - INFO - n_rois: 200 2024-12-06 13:56:36,616 - JUNIFER - INFO - yeo_networks: 17 2024-12-06 13:56:36,616 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2024-12-06 13:56:36,618 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_200Parcels_17Networks_order_FSLMNI152_1mm.nii.gz 2024-12-06 13:56:36,890 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 2024-12-06 13:56:38,007 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1 2024-12-06 13:56:38,511 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpetbimmax/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_e8e91a30-b3d9-11ef-9645-0242ac120002qu4qu26y/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpetbimmax/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_e8e91a30-b3d9-11ef-9645-0242ac120002qu4qu26y/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpetbimmax/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_e8e91a30-b3d9-11ef-9645-0242ac120002qu4qu26y/parcellation_warped.nii.gz 2024-12-06 13:56:55,320 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2024-12-06 13:56:56,710 - JUNIFER - INFO - Storing in 2024-12-06 13:56:56,764 - JUNIFER - INFO - Marker collection fitting done 2024-12-06 13:56:56,768 - JUNIFER - INFO - Getting element sub-03 2024-12-06 13:56:56,768 - JUNIFER - INFO - Fitting pipeline 2024-12-06 13:56:56,769 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0003_MR1/mwrc1OAS1_0003_MR1_mpr_anon_fslswapdim_bet.nii.gz 2024-12-06 13:56:56,769 - JUNIFER - INFO - VBM_GM is of type NIFTI 2024-12-06 13:56:56,770 - JUNIFER - INFO - Fitting marker Schaefer100x17_TrimMean80 2024-12-06 13:56:56,770 - JUNIFER - INFO - Computing VBM_GM 2024-12-06 13:56:56,770 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2024-12-06 13:56:56,770 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2024-12-06 13:56:56,770 - JUNIFER - INFO - Parcellation parameters: 2024-12-06 13:56:56,770 - JUNIFER - INFO - resolution: None 2024-12-06 13:56:56,770 - JUNIFER - INFO - n_rois: 100 2024-12-06 13:56:56,770 - JUNIFER - INFO - yeo_networks: 17 2024-12-06 13:56:56,770 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2024-12-06 13:56:56,771 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_100Parcels_17Networks_order_FSLMNI152_1mm.nii.gz 2024-12-06 13:56:57,040 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 2024-12-06 13:56:58,172 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1 2024-12-06 13:56:58,674 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpfkzpa49u/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_f4eba80c-b3d9-11ef-9645-0242ac120002h_zq86c2/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpfkzpa49u/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_f4eba80c-b3d9-11ef-9645-0242ac120002h_zq86c2/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpfkzpa49u/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_f4eba80c-b3d9-11ef-9645-0242ac120002h_zq86c2/parcellation_warped.nii.gz 2024-12-06 13:57:07,662 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2024-12-06 13:57:09,014 - JUNIFER - INFO - Storing in 2024-12-06 13:57:09,048 - JUNIFER - INFO - Fitting marker Schaefer200x17_Mean 2024-12-06 13:57:09,048 - JUNIFER - INFO - Computing VBM_GM 2024-12-06 13:57:09,048 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2024-12-06 13:57:09,048 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2024-12-06 13:57:09,048 - JUNIFER - INFO - Parcellation parameters: 2024-12-06 13:57:09,048 - JUNIFER - INFO - resolution: None 2024-12-06 13:57:09,048 - JUNIFER - INFO - n_rois: 200 2024-12-06 13:57:09,048 - JUNIFER - INFO - yeo_networks: 17 2024-12-06 13:57:09,048 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2024-12-06 13:57:09,050 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_200Parcels_17Networks_order_FSLMNI152_1mm.nii.gz 2024-12-06 13:57:09,321 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 2024-12-06 13:57:10,489 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1 2024-12-06 13:57:10,994 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpfkzpa49u/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_fc3db712-b3d9-11ef-9645-0242ac120002054n1on1/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpfkzpa49u/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_fc3db712-b3d9-11ef-9645-0242ac120002054n1on1/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpfkzpa49u/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_fc3db712-b3d9-11ef-9645-0242ac120002054n1on1/parcellation_warped.nii.gz 2024-12-06 13:57:27,903 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2024-12-06 13:57:29,312 - JUNIFER - INFO - Storing in 2024-12-06 13:57:29,365 - JUNIFER - INFO - Marker collection fitting done 2024-12-06 13:57:29,369 - JUNIFER - INFO - Getting element sub-04 2024-12-06 13:57:29,370 - JUNIFER - INFO - Fitting pipeline 2024-12-06 13:57:29,370 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0004_MR1/mwrc1OAS1_0004_MR1_mpr_anon_fslswapdim_bet.nii.gz 2024-12-06 13:57:29,370 - JUNIFER - INFO - VBM_GM is of type NIFTI 2024-12-06 13:57:29,371 - JUNIFER - INFO - Fitting marker Schaefer100x17_TrimMean80 2024-12-06 13:57:29,371 - JUNIFER - INFO - Computing VBM_GM 2024-12-06 13:57:29,371 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2024-12-06 13:57:29,371 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2024-12-06 13:57:29,371 - JUNIFER - INFO - Parcellation parameters: 2024-12-06 13:57:29,371 - JUNIFER - INFO - resolution: None 2024-12-06 13:57:29,371 - JUNIFER - INFO - n_rois: 100 2024-12-06 13:57:29,371 - JUNIFER - INFO - yeo_networks: 17 2024-12-06 13:57:29,371 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2024-12-06 13:57:29,373 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_100Parcels_17Networks_order_FSLMNI152_1mm.nii.gz 2024-12-06 13:57:29,642 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 2024-12-06 13:57:30,782 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1 2024-12-06 13:57:31,286 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpw1sl6aey/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_085a72b0-b3da-11ef-9645-0242ac12000258nyzdfd/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpw1sl6aey/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_085a72b0-b3da-11ef-9645-0242ac12000258nyzdfd/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpw1sl6aey/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_085a72b0-b3da-11ef-9645-0242ac12000258nyzdfd/parcellation_warped.nii.gz 2024-12-06 13:57:40,289 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2024-12-06 13:57:41,695 - JUNIFER - INFO - Storing in 2024-12-06 13:57:41,729 - JUNIFER - INFO - Fitting marker Schaefer200x17_Mean 2024-12-06 13:57:41,729 - JUNIFER - INFO - Computing VBM_GM 2024-12-06 13:57:41,730 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2024-12-06 13:57:41,730 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2024-12-06 13:57:41,730 - JUNIFER - INFO - Parcellation parameters: 2024-12-06 13:57:41,730 - JUNIFER - INFO - resolution: None 2024-12-06 13:57:41,730 - JUNIFER - INFO - n_rois: 200 2024-12-06 13:57:41,730 - JUNIFER - INFO - yeo_networks: 17 2024-12-06 13:57:41,730 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2024-12-06 13:57:41,731 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_200Parcels_17Networks_order_FSLMNI152_1mm.nii.gz 2024-12-06 13:57:42,005 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 2024-12-06 13:57:43,154 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1 2024-12-06 13:57:43,658 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpw1sl6aey/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_0fb8d06a-b3da-11ef-9645-0242ac120002w3s891g0/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpw1sl6aey/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_0fb8d06a-b3da-11ef-9645-0242ac120002w3s891g0/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpw1sl6aey/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_0fb8d06a-b3da-11ef-9645-0242ac120002w3s891g0/parcellation_warped.nii.gz 2024-12-06 13:58:00,436 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2024-12-06 13:58:01,856 - JUNIFER - INFO - Storing in 2024-12-06 13:58:01,909 - JUNIFER - INFO - Marker collection fitting done 2024-12-06 13:58:01,914 - JUNIFER - INFO - Getting element sub-05 2024-12-06 13:58:01,914 - JUNIFER - INFO - Fitting pipeline 2024-12-06 13:58:01,914 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0005_MR1/mwrc1OAS1_0005_MR1_mpr_anon_fslswapdim_bet.nii.gz 2024-12-06 13:58:01,914 - JUNIFER - INFO - VBM_GM is of type NIFTI 2024-12-06 13:58:01,915 - JUNIFER - INFO - Fitting marker Schaefer100x17_TrimMean80 2024-12-06 13:58:01,915 - JUNIFER - INFO - Computing VBM_GM 2024-12-06 13:58:01,915 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2024-12-06 13:58:01,915 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2024-12-06 13:58:01,915 - JUNIFER - INFO - Parcellation parameters: 2024-12-06 13:58:01,915 - JUNIFER - INFO - resolution: None 2024-12-06 13:58:01,915 - JUNIFER - INFO - n_rois: 100 2024-12-06 13:58:01,916 - JUNIFER - INFO - yeo_networks: 17 2024-12-06 13:58:01,916 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2024-12-06 13:58:01,917 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_100Parcels_17Networks_order_FSLMNI152_1mm.nii.gz 2024-12-06 13:58:02,187 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 2024-12-06 13:58:03,333 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1 2024-12-06 13:58:03,838 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpq95405mr/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_1bc048f2-b3da-11ef-9645-0242ac1200026mq22dis/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpq95405mr/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_1bc048f2-b3da-11ef-9645-0242ac1200026mq22dis/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpq95405mr/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_1bc048f2-b3da-11ef-9645-0242ac1200026mq22dis/parcellation_warped.nii.gz 2024-12-06 13:58:12,815 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2024-12-06 13:58:14,177 - JUNIFER - INFO - Storing in 2024-12-06 13:58:14,211 - JUNIFER - INFO - Fitting marker Schaefer200x17_Mean 2024-12-06 13:58:14,211 - JUNIFER - INFO - Computing VBM_GM 2024-12-06 13:58:14,211 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2024-12-06 13:58:14,211 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2024-12-06 13:58:14,211 - JUNIFER - INFO - Parcellation parameters: 2024-12-06 13:58:14,211 - JUNIFER - INFO - resolution: None 2024-12-06 13:58:14,211 - JUNIFER - INFO - n_rois: 200 2024-12-06 13:58:14,211 - JUNIFER - INFO - yeo_networks: 17 2024-12-06 13:58:14,211 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2024-12-06 13:58:14,213 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_200Parcels_17Networks_order_FSLMNI152_1mm.nii.gz 2024-12-06 13:58:14,485 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 2024-12-06 13:58:15,631 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1 2024-12-06 13:58:16,134 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpq95405mr/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_2314ce84-b3da-11ef-9645-0242ac120002jpuexe53/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpq95405mr/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_2314ce84-b3da-11ef-9645-0242ac120002jpuexe53/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpq95405mr/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_2314ce84-b3da-11ef-9645-0242ac120002jpuexe53/parcellation_warped.nii.gz 2024-12-06 13:58:32,992 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2024-12-06 13:58:34,429 - JUNIFER - INFO - Storing in 2024-12-06 13:58:34,484 - JUNIFER - INFO - Marker collection fitting done 2024-12-06 13:58:34,489 - JUNIFER - INFO - Getting element sub-06 2024-12-06 13:58:34,489 - JUNIFER - INFO - Fitting pipeline 2024-12-06 13:58:34,489 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0006_MR1/mwrc1OAS1_0006_MR1_mpr_anon_fslswapdim_bet.nii.gz 2024-12-06 13:58:34,489 - JUNIFER - INFO - VBM_GM is of type NIFTI 2024-12-06 13:58:34,490 - JUNIFER - INFO - Fitting marker Schaefer100x17_TrimMean80 2024-12-06 13:58:34,490 - JUNIFER - INFO - Computing VBM_GM 2024-12-06 13:58:34,490 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2024-12-06 13:58:34,490 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2024-12-06 13:58:34,490 - JUNIFER - INFO - Parcellation parameters: 2024-12-06 13:58:34,490 - JUNIFER - INFO - resolution: None 2024-12-06 13:58:34,490 - JUNIFER - INFO - n_rois: 100 2024-12-06 13:58:34,490 - JUNIFER - INFO - yeo_networks: 17 2024-12-06 13:58:34,490 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2024-12-06 13:58:34,492 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_100Parcels_17Networks_order_FSLMNI152_1mm.nii.gz 2024-12-06 13:58:34,762 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 2024-12-06 13:58:35,908 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1 2024-12-06 13:58:36,412 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpjt_vl4nt/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_2f2aeaf0-b3da-11ef-9645-0242ac120002zd2l16pn/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpjt_vl4nt/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_2f2aeaf0-b3da-11ef-9645-0242ac120002zd2l16pn/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpjt_vl4nt/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_2f2aeaf0-b3da-11ef-9645-0242ac120002zd2l16pn/parcellation_warped.nii.gz 2024-12-06 13:58:45,418 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2024-12-06 13:58:46,884 - JUNIFER - INFO - Storing in 2024-12-06 13:58:46,918 - JUNIFER - INFO - Fitting marker Schaefer200x17_Mean 2024-12-06 13:58:46,918 - JUNIFER - INFO - Computing VBM_GM 2024-12-06 13:58:46,918 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2024-12-06 13:58:46,919 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2024-12-06 13:58:46,919 - JUNIFER - INFO - Parcellation parameters: 2024-12-06 13:58:46,919 - JUNIFER - INFO - resolution: None 2024-12-06 13:58:46,919 - JUNIFER - INFO - n_rois: 200 2024-12-06 13:58:46,919 - JUNIFER - INFO - yeo_networks: 17 2024-12-06 13:58:46,919 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2024-12-06 13:58:46,920 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_200Parcels_17Networks_order_FSLMNI152_1mm.nii.gz 2024-12-06 13:58:47,195 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 2024-12-06 13:58:48,363 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1 2024-12-06 13:58:48,872 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpjt_vl4nt/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_36940aba-b3da-11ef-9645-0242ac1200029jbpr5vg/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpjt_vl4nt/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_36940aba-b3da-11ef-9645-0242ac1200029jbpr5vg/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpjt_vl4nt/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_36940aba-b3da-11ef-9645-0242ac1200029jbpr5vg/parcellation_warped.nii.gz 2024-12-06 13:59:05,692 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2024-12-06 13:59:07,190 - JUNIFER - INFO - Storing in 2024-12-06 13:59:07,243 - JUNIFER - INFO - Marker collection fitting done 2024-12-06 13:59:07,248 - JUNIFER - INFO - Getting element sub-07 2024-12-06 13:59:07,248 - JUNIFER - INFO - Fitting pipeline 2024-12-06 13:59:07,248 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0007_MR1/mwrc1OAS1_0007_MR1_mpr_anon_fslswapdim_bet.nii.gz 2024-12-06 13:59:07,248 - JUNIFER - INFO - VBM_GM is of type NIFTI 2024-12-06 13:59:07,249 - JUNIFER - INFO - Fitting marker Schaefer100x17_TrimMean80 2024-12-06 13:59:07,249 - JUNIFER - INFO - Computing VBM_GM 2024-12-06 13:59:07,249 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2024-12-06 13:59:07,249 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2024-12-06 13:59:07,249 - JUNIFER - INFO - Parcellation parameters: 2024-12-06 13:59:07,249 - JUNIFER - INFO - resolution: None 2024-12-06 13:59:07,249 - JUNIFER - INFO - n_rois: 100 2024-12-06 13:59:07,249 - JUNIFER - INFO - yeo_networks: 17 2024-12-06 13:59:07,249 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2024-12-06 13:59:07,251 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_100Parcels_17Networks_order_FSLMNI152_1mm.nii.gz 2024-12-06 13:59:07,520 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 2024-12-06 13:59:08,670 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1 2024-12-06 13:59:09,175 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpeq_3bcvo/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_42b15c3a-b3da-11ef-9645-0242ac120002s46iuyz8/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpeq_3bcvo/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_42b15c3a-b3da-11ef-9645-0242ac120002s46iuyz8/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpeq_3bcvo/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_42b15c3a-b3da-11ef-9645-0242ac120002s46iuyz8/parcellation_warped.nii.gz 2024-12-06 13:59:18,219 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2024-12-06 13:59:19,644 - JUNIFER - INFO - Storing in 2024-12-06 13:59:19,678 - JUNIFER - INFO - Fitting marker Schaefer200x17_Mean 2024-12-06 13:59:19,678 - JUNIFER - INFO - Computing VBM_GM 2024-12-06 13:59:19,679 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2024-12-06 13:59:19,679 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2024-12-06 13:59:19,679 - JUNIFER - INFO - Parcellation parameters: 2024-12-06 13:59:19,679 - JUNIFER - INFO - resolution: None 2024-12-06 13:59:19,679 - JUNIFER - INFO - n_rois: 200 2024-12-06 13:59:19,679 - JUNIFER - INFO - yeo_networks: 17 2024-12-06 13:59:19,679 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2024-12-06 13:59:19,680 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_200Parcels_17Networks_order_FSLMNI152_1mm.nii.gz 2024-12-06 13:59:19,956 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 2024-12-06 13:59:21,112 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1 2024-12-06 13:59:21,616 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpeq_3bcvo/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_4a1aee0a-b3da-11ef-9645-0242ac120002e7kf9_p5/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpeq_3bcvo/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_4a1aee0a-b3da-11ef-9645-0242ac120002e7kf9_p5/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpeq_3bcvo/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_4a1aee0a-b3da-11ef-9645-0242ac120002e7kf9_p5/parcellation_warped.nii.gz 2024-12-06 13:59:38,390 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2024-12-06 13:59:39,797 - JUNIFER - INFO - Storing in 2024-12-06 13:59:39,851 - JUNIFER - INFO - Marker collection fitting done 2024-12-06 13:59:39,856 - JUNIFER - INFO - Getting element sub-08 2024-12-06 13:59:39,856 - JUNIFER - INFO - Fitting pipeline 2024-12-06 13:59:39,856 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0009_MR1/mwrc1OAS1_0009_MR1_mpr_anon_fslswapdim_bet.nii.gz 2024-12-06 13:59:39,856 - JUNIFER - INFO - VBM_GM is of type NIFTI 2024-12-06 13:59:39,857 - JUNIFER - INFO - Fitting marker Schaefer100x17_TrimMean80 2024-12-06 13:59:39,857 - JUNIFER - INFO - Computing VBM_GM 2024-12-06 13:59:39,857 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2024-12-06 13:59:39,857 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2024-12-06 13:59:39,858 - JUNIFER - INFO - Parcellation parameters: 2024-12-06 13:59:39,858 - JUNIFER - INFO - resolution: None 2024-12-06 13:59:39,858 - JUNIFER - INFO - n_rois: 100 2024-12-06 13:59:39,858 - JUNIFER - INFO - yeo_networks: 17 2024-12-06 13:59:39,858 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2024-12-06 13:59:39,859 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_100Parcels_17Networks_order_FSLMNI152_1mm.nii.gz 2024-12-06 13:59:40,130 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 2024-12-06 13:59:41,278 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1 2024-12-06 13:59:41,782 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpj7vcnoxp/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_56214294-b3da-11ef-9645-0242ac120002yvcrf21r/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpj7vcnoxp/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_56214294-b3da-11ef-9645-0242ac120002yvcrf21r/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpj7vcnoxp/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_56214294-b3da-11ef-9645-0242ac120002yvcrf21r/parcellation_warped.nii.gz 2024-12-06 13:59:50,746 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2024-12-06 13:59:52,218 - JUNIFER - INFO - Storing in 2024-12-06 13:59:52,253 - JUNIFER - INFO - Fitting marker Schaefer200x17_Mean 2024-12-06 13:59:52,253 - JUNIFER - INFO - Computing VBM_GM 2024-12-06 13:59:52,253 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2024-12-06 13:59:52,253 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2024-12-06 13:59:52,253 - JUNIFER - INFO - Parcellation parameters: 2024-12-06 13:59:52,253 - JUNIFER - INFO - resolution: None 2024-12-06 13:59:52,253 - JUNIFER - INFO - n_rois: 200 2024-12-06 13:59:52,254 - JUNIFER - INFO - yeo_networks: 17 2024-12-06 13:59:52,254 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2024-12-06 13:59:52,255 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_200Parcels_17Networks_order_FSLMNI152_1mm.nii.gz 2024-12-06 13:59:52,529 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 2024-12-06 13:59:53,693 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1 2024-12-06 13:59:54,198 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpj7vcnoxp/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_5d8535e0-b3da-11ef-9645-0242ac120002wm2px9hs/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpj7vcnoxp/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_5d8535e0-b3da-11ef-9645-0242ac120002wm2px9hs/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpj7vcnoxp/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_5d8535e0-b3da-11ef-9645-0242ac120002wm2px9hs/parcellation_warped.nii.gz 2024-12-06 14:00:10,952 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2024-12-06 14:00:12,415 - JUNIFER - INFO - Storing in 2024-12-06 14:00:12,468 - JUNIFER - INFO - Marker collection fitting done 2024-12-06 14:00:12,472 - JUNIFER - INFO - Getting element sub-09 2024-12-06 14:00:12,473 - JUNIFER - INFO - Fitting pipeline 2024-12-06 14:00:12,473 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0010_MR1/mwrc1OAS1_0010_MR1_mpr_anon_fslswapdim_bet.nii.gz 2024-12-06 14:00:12,473 - JUNIFER - INFO - VBM_GM is of type NIFTI 2024-12-06 14:00:12,474 - JUNIFER - INFO - Fitting marker Schaefer100x17_TrimMean80 2024-12-06 14:00:12,474 - JUNIFER - INFO - Computing VBM_GM 2024-12-06 14:00:12,474 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2024-12-06 14:00:12,474 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2024-12-06 14:00:12,474 - JUNIFER - INFO - Parcellation parameters: 2024-12-06 14:00:12,474 - JUNIFER - INFO - resolution: None 2024-12-06 14:00:12,474 - JUNIFER - INFO - n_rois: 100 2024-12-06 14:00:12,474 - JUNIFER - INFO - yeo_networks: 17 2024-12-06 14:00:12,474 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2024-12-06 14:00:12,476 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_100Parcels_17Networks_order_FSLMNI152_1mm.nii.gz 2024-12-06 14:00:12,748 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 2024-12-06 14:00:13,902 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1 2024-12-06 14:00:14,405 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpi3nt6qpz/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_699233e2-b3da-11ef-9645-0242ac1200025t3fgojo/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpi3nt6qpz/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_699233e2-b3da-11ef-9645-0242ac1200025t3fgojo/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpi3nt6qpz/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_699233e2-b3da-11ef-9645-0242ac1200025t3fgojo/parcellation_warped.nii.gz 2024-12-06 14:00:23,385 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2024-12-06 14:00:24,832 - JUNIFER - INFO - Storing in 2024-12-06 14:00:24,867 - JUNIFER - INFO - Fitting marker Schaefer200x17_Mean 2024-12-06 14:00:24,867 - JUNIFER - INFO - Computing VBM_GM 2024-12-06 14:00:24,867 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2024-12-06 14:00:24,867 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2024-12-06 14:00:24,867 - JUNIFER - INFO - Parcellation parameters: 2024-12-06 14:00:24,867 - JUNIFER - INFO - resolution: None 2024-12-06 14:00:24,867 - JUNIFER - INFO - n_rois: 200 2024-12-06 14:00:24,867 - JUNIFER - INFO - yeo_networks: 17 2024-12-06 14:00:24,867 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2024-12-06 14:00:24,869 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_200Parcels_17Networks_order_FSLMNI152_1mm.nii.gz 2024-12-06 14:00:25,138 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 2024-12-06 14:00:26,297 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1 2024-12-06 14:00:26,802 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpi3nt6qpz/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_70f502cc-b3da-11ef-9645-0242ac120002hehk7yl_/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpi3nt6qpz/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_70f502cc-b3da-11ef-9645-0242ac120002hehk7yl_/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpi3nt6qpz/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_70f502cc-b3da-11ef-9645-0242ac120002hehk7yl_/parcellation_warped.nii.gz 2024-12-06 14:00:43,533 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2024-12-06 14:00:44,974 - JUNIFER - INFO - Storing in 2024-12-06 14:00:45,028 - JUNIFER - INFO - Marker collection fitting done 2024-12-06 14:00:45,033 - JUNIFER - INFO - Getting element sub-10 2024-12-06 14:00:45,033 - JUNIFER - INFO - Fitting pipeline 2024-12-06 14:00:45,033 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0011_MR1/mwrc1OAS1_0011_MR1_mpr_anon_fslswapdim_bet.nii.gz 2024-12-06 14:00:45,033 - JUNIFER - INFO - VBM_GM is of type NIFTI 2024-12-06 14:00:45,034 - JUNIFER - INFO - Fitting marker Schaefer100x17_TrimMean80 2024-12-06 14:00:45,034 - JUNIFER - INFO - Computing VBM_GM 2024-12-06 14:00:45,034 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2024-12-06 14:00:45,034 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2024-12-06 14:00:45,034 - JUNIFER - INFO - Parcellation parameters: 2024-12-06 14:00:45,034 - JUNIFER - INFO - resolution: None 2024-12-06 14:00:45,034 - JUNIFER - INFO - n_rois: 100 2024-12-06 14:00:45,034 - JUNIFER - INFO - yeo_networks: 17 2024-12-06 14:00:45,034 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2024-12-06 14:00:45,036 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_100Parcels_17Networks_order_FSLMNI152_1mm.nii.gz 2024-12-06 14:00:45,303 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 2024-12-06 14:00:46,443 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1 2024-12-06 14:00:46,948 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpwcd5qjwb/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_7cf9c724-b3da-11ef-9645-0242ac120002b0jah5p0/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpwcd5qjwb/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_7cf9c724-b3da-11ef-9645-0242ac120002b0jah5p0/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpwcd5qjwb/ants_parcellation_warper_Schaefer100x17_from_MNI152NLin6Asym_to_MNI152Lin_7cf9c724-b3da-11ef-9645-0242ac120002b0jah5p0/parcellation_warped.nii.gz 2024-12-06 14:00:55,910 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2024-12-06 14:00:57,269 - JUNIFER - INFO - Storing in 2024-12-06 14:00:57,303 - JUNIFER - INFO - Fitting marker Schaefer200x17_Mean 2024-12-06 14:00:57,303 - JUNIFER - INFO - Computing VBM_GM 2024-12-06 14:00:57,303 - JUNIFER - INFO - Parcellation will be warped from MNI152NLin6Asym to MNI152Lin using highest resolution 2024-12-06 14:00:57,303 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2024-12-06 14:00:57,303 - JUNIFER - INFO - Parcellation parameters: 2024-12-06 14:00:57,303 - JUNIFER - INFO - resolution: None 2024-12-06 14:00:57,303 - JUNIFER - INFO - n_rois: 200 2024-12-06 14:00:57,303 - JUNIFER - INFO - yeo_networks: 17 2024-12-06 14:00:57,303 - JUNIFER - INFO - Resolution set to None, using highest resolution. 2024-12-06 14:00:57,305 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_200Parcels_17Networks_order_FSLMNI152_1mm.nii.gz 2024-12-06 14:00:57,577 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 2024-12-06 14:00:58,704 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 1 2024-12-06 14:00:59,212 - JUNIFER - INFO - antsApplyTransforms command to be executed: antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpwcd5qjwb/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_844ac2bc-b3da-11ef-9645-0242ac1200028sfwvr7j/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpwcd5qjwb/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_844ac2bc-b3da-11ef-9645-0242ac1200028sfwvr7j/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpwcd5qjwb/ants_parcellation_warper_Schaefer200x17_from_MNI152NLin6Asym_to_MNI152Lin_844ac2bc-b3da-11ef-9645-0242ac1200028sfwvr7j/parcellation_warped.nii.gz 2024-12-06 14:01:15,951 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output: 2024-12-06 14:01:17,376 - JUNIFER - INFO - Storing in 2024-12-06 14:01:17,431 - JUNIFER - INFO - Marker collection fitting done 2024-12-06 14:01:17,435 - JUNIFER - INFO - Collecting data using SQLiteFeatureStorage 2024-12-06 14:01:17,436 - JUNIFER - INFO - Collecting data from /tmp/tmpck_vrlrg/*test.sqlite file: 0it [00:00, ?it/s] feature: 0%| | 0/2 [00:00` .. container:: sphx-glr-download sphx-glr-download-python :download:`Download Python source code: run_junifer_julearn.py ` .. container:: sphx-glr-download sphx-glr-download-zip :download:`Download zipped: run_junifer_julearn.zip ` .. only:: html .. rst-class:: sphx-glr-signature `Gallery generated by Sphinx-Gallery `_