Note
Go to the end to download the full example code.
8.3. UKB VBM GMD Extraction¶
Authors: Federico Raimondo
License: BSD 3 clause
2024-11-13 15:23:08,915 - JUNIFER - INFO - Registering OasisVBMTestingDataGrabber in datagrabber
2024-11-13 15:23:08,915 - JUNIFER - INFO - Registering SPMAuditoryTestingDataGrabber in datagrabber
2024-11-13 15:23:08,915 - JUNIFER - INFO - Registering PartlyCloudyTestingDataGrabber in datagrabber
2024-11-13 15:23:14,118 - JUNIFER - INFO - Registering ParcelAggregation in marker
2024-11-13 15:23:14,118 [ INFO] Registering ParcelAggregation in marker
2024-11-13 15:23:14,128 - JUNIFER - INFO - Registering SQLiteFeatureStorage in storage
2024-11-13 15:23:14,128 [ INFO] Registering SQLiteFeatureStorage in storage
2024-11-13 15:23:14,128 - JUNIFER - INFO - Validating Marker Collection
2024-11-13 15:23:14,128 [ INFO] Validating Marker Collection
2024-11-13 15:23:14,128 - JUNIFER - INFO - DataGrabber output type: ['VBM_GM']
2024-11-13 15:23:14,128 [ INFO] DataGrabber output type: ['VBM_GM']
2024-11-13 15:23:14,128 - JUNIFER - INFO - Validating Data Reader:
2024-11-13 15:23:14,128 [ INFO] Validating Data Reader:
2024-11-13 15:23:14,128 - JUNIFER - INFO - Data Reader output type: ['VBM_GM']
2024-11-13 15:23:14,128 [ INFO] Data Reader output type: ['VBM_GM']
2024-11-13 15:23:14,128 - JUNIFER - INFO - Validating Marker: Schaefer1000x7_TrimMean80
2024-11-13 15:23:14,128 [ INFO] Validating Marker: Schaefer1000x7_TrimMean80
2024-11-13 15:23:14,128 - JUNIFER - INFO - Marker output type: ['vector']
2024-11-13 15:23:14,128 [ INFO] Marker output type: ['vector']
2024-11-13 15:23:14,128 - JUNIFER - INFO - Validating storage for Schaefer1000x7_TrimMean80
2024-11-13 15:23:14,128 [ INFO] Validating storage for Schaefer1000x7_TrimMean80
2024-11-13 15:23:14,129 - JUNIFER - INFO - Validating Marker: Schaefer1000x7_Mean
2024-11-13 15:23:14,129 [ INFO] Validating Marker: Schaefer1000x7_Mean
2024-11-13 15:23:14,129 - JUNIFER - INFO - Marker output type: ['vector']
2024-11-13 15:23:14,129 [ INFO] Marker output type: ['vector']
2024-11-13 15:23:14,129 - JUNIFER - INFO - Validating storage for Schaefer1000x7_Mean
2024-11-13 15:23:14,129 [ INFO] Validating storage for Schaefer1000x7_Mean
2024-11-13 15:23:14,129 - JUNIFER - INFO - Validating Marker: Schaefer1000x7_Std
2024-11-13 15:23:14,129 [ INFO] Validating Marker: Schaefer1000x7_Std
2024-11-13 15:23:14,129 - JUNIFER - INFO - Marker output type: ['vector']
2024-11-13 15:23:14,129 [ INFO] Marker output type: ['vector']
2024-11-13 15:23:14,129 - JUNIFER - INFO - Validating storage for Schaefer1000x7_Std
2024-11-13 15:23:14,129 [ INFO] Validating storage for Schaefer1000x7_Std
Added README.md to /github/home/nilearn_data
Dataset created in /github/home/nilearn_data/oasis1
Downloading data from https://www.nitrc.org/frs/download.php/6364/archive_dartel.tgz ...
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Downloaded 872259584 of 905208634 bytes (96.4%, 0.9s remaining) ...done. (25 seconds, 0 min)
Extracting data from /github/home/nilearn_data/oasis1/7088b0bf88f5650db26e32ec3afdd589/archive_dartel.tgz..... done.
2024-11-13 15:23:44,473 - JUNIFER - INFO - Getting element sub-01
2024-11-13 15:23:44,473 [ INFO] Getting element sub-01
2024-11-13 15:23:44,474 - JUNIFER - INFO - Fitting pipeline
2024-11-13 15:23:44,474 [ INFO] Fitting pipeline
2024-11-13 15:23:44,474 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0001_MR1/mwrc1OAS1_0001_MR1_mpr_anon_fslswapdim_bet.nii.gz
2024-11-13 15:23:44,474 [ INFO] Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0001_MR1/mwrc1OAS1_0001_MR1_mpr_anon_fslswapdim_bet.nii.gz
2024-11-13 15:23:44,474 - JUNIFER - INFO - VBM_GM is of type NIFTI
2024-11-13 15:23:44,474 [ INFO] VBM_GM is of type NIFTI
2024-11-13 15:23:44,475 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2024-11-13 15:23:44,475 [ INFO] Fitting marker Schaefer1000x7_TrimMean80
2024-11-13 15:23:44,475 - JUNIFER - INFO - Computing VBM_GM
2024-11-13 15:23:44,475 [ INFO] Computing VBM_GM
2024-11-13 15:23:44,475 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-11-13 15:23:44,475 [ INFO] Fetching one of Schaefer parcellations.
2024-11-13 15:23:44,475 - JUNIFER - INFO - Parcellation parameters:
2024-11-13 15:23:44,475 [ INFO] Parcellation parameters:
2024-11-13 15:23:44,476 - JUNIFER - INFO - resolution: 2.0
2024-11-13 15:23:44,476 [ INFO] resolution: 2.0
2024-11-13 15:23:44,476 - JUNIFER - INFO - n_rois: 1000
2024-11-13 15:23:44,476 [ INFO] n_rois: 1000
2024-11-13 15:23:44,476 - JUNIFER - INFO - yeo_networks: 7
2024-11-13 15:23:44,476 [ INFO] yeo_networks: 7
2024-11-13 15:23:44,476 - JUNIFER - INFO - At least one of the parcellation files are missing. Fetching using nilearn.
2024-11-13 15:23:44,476 [ INFO] At least one of the parcellation files are missing. Fetching using nilearn.
Added README.md to /github/home/junifer/data/parcellations
Dataset created in /github/home/junifer/data/parcellations/schaefer_2018
Downloading data from https://raw.githubusercontent.com/ThomasYeoLab/CBIG/v0.14.3-Update_Yeo2011_Schaefer2018_labelname/stable_projects/brain_parcellation/Schaefer2018_LocalGlobal/Parcellations/MNI/Schaefer2018_1000Parcels_7Networks_order.txt ...
...done. (0 seconds, 0 min)
Downloading data from https://raw.githubusercontent.com/ThomasYeoLab/CBIG/v0.14.3-Update_Yeo2011_Schaefer2018_labelname/stable_projects/brain_parcellation/Schaefer2018_LocalGlobal/Parcellations/MNI/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz ...
...done. (0 seconds, 0 min)
2024-11-13 15:23:44,781 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-11-13 15:23:44,781 [ INFO] Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-11-13 15:23:44,844 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-11-13 15:23:44,844 [ INFO] Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-11-13 15:23:45,958 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2
2024-11-13 15:23:45,958 [ INFO] Downloading template MNI152Lin in resolution 2
Downloading https://templateflow.s3.amazonaws.com/tpl-MNI152Lin/tpl-MNI152Lin_res-02_T1w.nii.gz
0%| | 0.00/1.45M [00:00<?, ?B/s]
5%|▍ | 69.6k/1.45M [00:00<00:03, 452kB/s]
25%|██▌ | 366k/1.45M [00:00<00:00, 1.33MB/s]
100%|██████████| 1.45M/1.45M [00:00<00:00, 3.72MB/s]
2024-11-13 15:23:46,725 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpfndouxqb/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_45832e34-a1d3-11ef-a09a-0242ac1200026wqgnowg/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpfndouxqb/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_45832e34-a1d3-11ef-a09a-0242ac1200026wqgnowg/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpfndouxqb/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_45832e34-a1d3-11ef-a09a-0242ac1200026wqgnowg/parcellation_warped.nii.gz
2024-11-13 15:23:46,725 [ INFO] antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpfndouxqb/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_45832e34-a1d3-11ef-a09a-0242ac1200026wqgnowg/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpfndouxqb/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_45832e34-a1d3-11ef-a09a-0242ac1200026wqgnowg/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpfndouxqb/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_45832e34-a1d3-11ef-a09a-0242ac1200026wqgnowg/parcellation_warped.nii.gz
2024-11-13 15:23:57,580 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
2024-11-13 15:23:57,580 [ INFO] antsApplyTransforms command succeeded with the following output:
2024-11-13 15:23:58,827 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpy7357uaw/test.sqlite (multiple output)>
2024-11-13 15:23:58,827 [ INFO] Storing in <SQLiteFeatureStorage @ /tmp/tmpy7357uaw/test.sqlite (multiple output)>
2024-11-13 15:23:59,006 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2024-11-13 15:23:59,006 [ INFO] Fitting marker Schaefer1000x7_Mean
2024-11-13 15:23:59,006 - JUNIFER - INFO - Computing VBM_GM
2024-11-13 15:23:59,006 [ INFO] Computing VBM_GM
2024-11-13 15:23:59,007 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-11-13 15:23:59,007 [ INFO] Fetching one of Schaefer parcellations.
2024-11-13 15:23:59,007 - JUNIFER - INFO - Parcellation parameters:
2024-11-13 15:23:59,007 [ INFO] Parcellation parameters:
2024-11-13 15:23:59,007 - JUNIFER - INFO - resolution: 2.0
2024-11-13 15:23:59,007 [ INFO] resolution: 2.0
2024-11-13 15:23:59,007 - JUNIFER - INFO - n_rois: 1000
2024-11-13 15:23:59,007 [ INFO] n_rois: 1000
2024-11-13 15:23:59,007 - JUNIFER - INFO - yeo_networks: 7
2024-11-13 15:23:59,007 [ INFO] yeo_networks: 7
2024-11-13 15:23:59,009 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-11-13 15:23:59,009 [ INFO] Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-11-13 15:23:59,070 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-11-13 15:23:59,070 [ INFO] Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-11-13 15:24:00,185 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2
2024-11-13 15:24:00,185 [ INFO] Downloading template MNI152Lin in resolution 2
2024-11-13 15:24:00,267 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpfndouxqb/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_4dfdf8aa-a1d3-11ef-a09a-0242ac120002xkh261he/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpfndouxqb/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_4dfdf8aa-a1d3-11ef-a09a-0242ac120002xkh261he/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpfndouxqb/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_4dfdf8aa-a1d3-11ef-a09a-0242ac120002xkh261he/parcellation_warped.nii.gz
2024-11-13 15:24:00,267 [ INFO] antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpfndouxqb/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_4dfdf8aa-a1d3-11ef-a09a-0242ac120002xkh261he/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpfndouxqb/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_4dfdf8aa-a1d3-11ef-a09a-0242ac120002xkh261he/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpfndouxqb/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_4dfdf8aa-a1d3-11ef-a09a-0242ac120002xkh261he/parcellation_warped.nii.gz
2024-11-13 15:24:11,072 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
2024-11-13 15:24:11,072 [ INFO] antsApplyTransforms command succeeded with the following output:
2024-11-13 15:24:12,303 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpy7357uaw/test.sqlite (multiple output)>
2024-11-13 15:24:12,303 [ INFO] Storing in <SQLiteFeatureStorage @ /tmp/tmpy7357uaw/test.sqlite (multiple output)>
2024-11-13 15:24:12,483 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2024-11-13 15:24:12,483 [ INFO] Fitting marker Schaefer1000x7_Std
2024-11-13 15:24:12,484 - JUNIFER - INFO - Computing VBM_GM
2024-11-13 15:24:12,484 [ INFO] Computing VBM_GM
2024-11-13 15:24:12,484 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-11-13 15:24:12,484 [ INFO] Fetching one of Schaefer parcellations.
2024-11-13 15:24:12,484 - JUNIFER - INFO - Parcellation parameters:
2024-11-13 15:24:12,484 [ INFO] Parcellation parameters:
2024-11-13 15:24:12,484 - JUNIFER - INFO - resolution: 2.0
2024-11-13 15:24:12,484 [ INFO] resolution: 2.0
2024-11-13 15:24:12,484 - JUNIFER - INFO - n_rois: 1000
2024-11-13 15:24:12,484 [ INFO] n_rois: 1000
2024-11-13 15:24:12,484 - JUNIFER - INFO - yeo_networks: 7
2024-11-13 15:24:12,484 [ INFO] yeo_networks: 7
2024-11-13 15:24:12,486 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-11-13 15:24:12,486 [ INFO] Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-11-13 15:24:12,543 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-11-13 15:24:12,543 [ INFO] Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-11-13 15:24:13,642 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2
2024-11-13 15:24:13,642 [ INFO] Downloading template MNI152Lin in resolution 2
2024-11-13 15:24:13,723 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpfndouxqb/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_5605e8e6-a1d3-11ef-a09a-0242ac120002fra91je6/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpfndouxqb/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_5605e8e6-a1d3-11ef-a09a-0242ac120002fra91je6/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpfndouxqb/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_5605e8e6-a1d3-11ef-a09a-0242ac120002fra91je6/parcellation_warped.nii.gz
2024-11-13 15:24:13,723 [ INFO] antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpfndouxqb/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_5605e8e6-a1d3-11ef-a09a-0242ac120002fra91je6/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpfndouxqb/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_5605e8e6-a1d3-11ef-a09a-0242ac120002fra91je6/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpfndouxqb/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_5605e8e6-a1d3-11ef-a09a-0242ac120002fra91je6/parcellation_warped.nii.gz
2024-11-13 15:24:24,683 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
2024-11-13 15:24:24,683 [ INFO] antsApplyTransforms command succeeded with the following output:
2024-11-13 15:24:25,944 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpy7357uaw/test.sqlite (multiple output)>
2024-11-13 15:24:25,944 [ INFO] Storing in <SQLiteFeatureStorage @ /tmp/tmpy7357uaw/test.sqlite (multiple output)>
2024-11-13 15:24:26,131 - JUNIFER - INFO - Marker collection fitting done
2024-11-13 15:24:26,131 [ INFO] Marker collection fitting done
2024-11-13 15:24:26,133 - JUNIFER - INFO - Getting element sub-02
2024-11-13 15:24:26,133 [ INFO] Getting element sub-02
2024-11-13 15:24:26,133 - JUNIFER - INFO - Fitting pipeline
2024-11-13 15:24:26,133 [ INFO] Fitting pipeline
2024-11-13 15:24:26,133 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0002_MR1/mwrc1OAS1_0002_MR1_mpr_anon_fslswapdim_bet.nii.gz
2024-11-13 15:24:26,133 [ INFO] Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0002_MR1/mwrc1OAS1_0002_MR1_mpr_anon_fslswapdim_bet.nii.gz
2024-11-13 15:24:26,133 - JUNIFER - INFO - VBM_GM is of type NIFTI
2024-11-13 15:24:26,133 [ INFO] VBM_GM is of type NIFTI
2024-11-13 15:24:26,134 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2024-11-13 15:24:26,134 [ INFO] Fitting marker Schaefer1000x7_TrimMean80
2024-11-13 15:24:26,135 - JUNIFER - INFO - Computing VBM_GM
2024-11-13 15:24:26,135 [ INFO] Computing VBM_GM
2024-11-13 15:24:26,135 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-11-13 15:24:26,135 [ INFO] Fetching one of Schaefer parcellations.
2024-11-13 15:24:26,135 - JUNIFER - INFO - Parcellation parameters:
2024-11-13 15:24:26,135 [ INFO] Parcellation parameters:
2024-11-13 15:24:26,135 - JUNIFER - INFO - resolution: 2.0
2024-11-13 15:24:26,135 [ INFO] resolution: 2.0
2024-11-13 15:24:26,135 - JUNIFER - INFO - n_rois: 1000
2024-11-13 15:24:26,135 [ INFO] n_rois: 1000
2024-11-13 15:24:26,135 - JUNIFER - INFO - yeo_networks: 7
2024-11-13 15:24:26,135 [ INFO] yeo_networks: 7
2024-11-13 15:24:26,137 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-11-13 15:24:26,137 [ INFO] Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-11-13 15:24:26,194 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-11-13 15:24:26,194 [ INFO] Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-11-13 15:24:27,302 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2
2024-11-13 15:24:27,302 [ INFO] Downloading template MNI152Lin in resolution 2
2024-11-13 15:24:27,384 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpyh_plfzz/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_5e28d16e-a1d3-11ef-a09a-0242ac120002djuwpurx/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpyh_plfzz/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_5e28d16e-a1d3-11ef-a09a-0242ac120002djuwpurx/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpyh_plfzz/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_5e28d16e-a1d3-11ef-a09a-0242ac120002djuwpurx/parcellation_warped.nii.gz
2024-11-13 15:24:27,384 [ INFO] antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpyh_plfzz/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_5e28d16e-a1d3-11ef-a09a-0242ac120002djuwpurx/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpyh_plfzz/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_5e28d16e-a1d3-11ef-a09a-0242ac120002djuwpurx/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpyh_plfzz/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_5e28d16e-a1d3-11ef-a09a-0242ac120002djuwpurx/parcellation_warped.nii.gz
2024-11-13 15:24:38,198 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
2024-11-13 15:24:38,198 [ INFO] antsApplyTransforms command succeeded with the following output:
2024-11-13 15:24:39,448 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpy7357uaw/test.sqlite (multiple output)>
2024-11-13 15:24:39,448 [ INFO] Storing in <SQLiteFeatureStorage @ /tmp/tmpy7357uaw/test.sqlite (multiple output)>
2024-11-13 15:24:39,621 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2024-11-13 15:24:39,621 [ INFO] Fitting marker Schaefer1000x7_Mean
2024-11-13 15:24:39,621 - JUNIFER - INFO - Computing VBM_GM
2024-11-13 15:24:39,621 [ INFO] Computing VBM_GM
2024-11-13 15:24:39,621 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-11-13 15:24:39,621 [ INFO] Fetching one of Schaefer parcellations.
2024-11-13 15:24:39,622 - JUNIFER - INFO - Parcellation parameters:
2024-11-13 15:24:39,622 [ INFO] Parcellation parameters:
2024-11-13 15:24:39,622 - JUNIFER - INFO - resolution: 2.0
2024-11-13 15:24:39,622 [ INFO] resolution: 2.0
2024-11-13 15:24:39,622 - JUNIFER - INFO - n_rois: 1000
2024-11-13 15:24:39,622 [ INFO] n_rois: 1000
2024-11-13 15:24:39,622 - JUNIFER - INFO - yeo_networks: 7
2024-11-13 15:24:39,622 [ INFO] yeo_networks: 7
2024-11-13 15:24:39,624 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-11-13 15:24:39,624 [ INFO] Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-11-13 15:24:39,682 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-11-13 15:24:39,682 [ INFO] Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-11-13 15:24:40,787 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2
2024-11-13 15:24:40,787 [ INFO] Downloading template MNI152Lin in resolution 2
2024-11-13 15:24:40,869 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpyh_plfzz/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_6632cac2-a1d3-11ef-a09a-0242ac120002hoia1phd/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpyh_plfzz/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_6632cac2-a1d3-11ef-a09a-0242ac120002hoia1phd/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpyh_plfzz/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_6632cac2-a1d3-11ef-a09a-0242ac120002hoia1phd/parcellation_warped.nii.gz
2024-11-13 15:24:40,869 [ INFO] antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpyh_plfzz/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_6632cac2-a1d3-11ef-a09a-0242ac120002hoia1phd/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpyh_plfzz/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_6632cac2-a1d3-11ef-a09a-0242ac120002hoia1phd/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpyh_plfzz/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_6632cac2-a1d3-11ef-a09a-0242ac120002hoia1phd/parcellation_warped.nii.gz
2024-11-13 15:24:51,755 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
2024-11-13 15:24:51,755 [ INFO] antsApplyTransforms command succeeded with the following output:
2024-11-13 15:24:53,112 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpy7357uaw/test.sqlite (multiple output)>
2024-11-13 15:24:53,112 [ INFO] Storing in <SQLiteFeatureStorage @ /tmp/tmpy7357uaw/test.sqlite (multiple output)>
2024-11-13 15:24:53,295 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2024-11-13 15:24:53,295 [ INFO] Fitting marker Schaefer1000x7_Std
2024-11-13 15:24:53,295 - JUNIFER - INFO - Computing VBM_GM
2024-11-13 15:24:53,295 [ INFO] Computing VBM_GM
2024-11-13 15:24:53,295 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-11-13 15:24:53,295 [ INFO] Fetching one of Schaefer parcellations.
2024-11-13 15:24:53,295 - JUNIFER - INFO - Parcellation parameters:
2024-11-13 15:24:53,295 [ INFO] Parcellation parameters:
2024-11-13 15:24:53,295 - JUNIFER - INFO - resolution: 2.0
2024-11-13 15:24:53,295 [ INFO] resolution: 2.0
2024-11-13 15:24:53,295 - JUNIFER - INFO - n_rois: 1000
2024-11-13 15:24:53,295 [ INFO] n_rois: 1000
2024-11-13 15:24:53,296 - JUNIFER - INFO - yeo_networks: 7
2024-11-13 15:24:53,296 [ INFO] yeo_networks: 7
2024-11-13 15:24:53,298 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-11-13 15:24:53,298 [ INFO] Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-11-13 15:24:53,355 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-11-13 15:24:53,355 [ INFO] Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-11-13 15:24:54,463 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2
2024-11-13 15:24:54,463 [ INFO] Downloading template MNI152Lin in resolution 2
2024-11-13 15:24:54,545 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpyh_plfzz/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_6e59397a-a1d3-11ef-a09a-0242ac12000250r1441l/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpyh_plfzz/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_6e59397a-a1d3-11ef-a09a-0242ac12000250r1441l/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpyh_plfzz/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_6e59397a-a1d3-11ef-a09a-0242ac12000250r1441l/parcellation_warped.nii.gz
2024-11-13 15:24:54,545 [ INFO] antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpyh_plfzz/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_6e59397a-a1d3-11ef-a09a-0242ac12000250r1441l/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpyh_plfzz/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_6e59397a-a1d3-11ef-a09a-0242ac12000250r1441l/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpyh_plfzz/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_6e59397a-a1d3-11ef-a09a-0242ac12000250r1441l/parcellation_warped.nii.gz
2024-11-13 15:25:05,422 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
2024-11-13 15:25:05,422 [ INFO] antsApplyTransforms command succeeded with the following output:
2024-11-13 15:25:06,650 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpy7357uaw/test.sqlite (multiple output)>
2024-11-13 15:25:06,650 [ INFO] Storing in <SQLiteFeatureStorage @ /tmp/tmpy7357uaw/test.sqlite (multiple output)>
2024-11-13 15:25:06,831 - JUNIFER - INFO - Marker collection fitting done
2024-11-13 15:25:06,831 [ INFO] Marker collection fitting done
2024-11-13 15:25:06,833 - JUNIFER - INFO - Getting element sub-03
2024-11-13 15:25:06,833 [ INFO] Getting element sub-03
2024-11-13 15:25:06,833 - JUNIFER - INFO - Fitting pipeline
2024-11-13 15:25:06,833 [ INFO] Fitting pipeline
2024-11-13 15:25:06,833 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0003_MR1/mwrc1OAS1_0003_MR1_mpr_anon_fslswapdim_bet.nii.gz
2024-11-13 15:25:06,833 [ INFO] Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0003_MR1/mwrc1OAS1_0003_MR1_mpr_anon_fslswapdim_bet.nii.gz
2024-11-13 15:25:06,833 - JUNIFER - INFO - VBM_GM is of type NIFTI
2024-11-13 15:25:06,833 [ INFO] VBM_GM is of type NIFTI
2024-11-13 15:25:06,834 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2024-11-13 15:25:06,834 [ INFO] Fitting marker Schaefer1000x7_TrimMean80
2024-11-13 15:25:06,834 - JUNIFER - INFO - Computing VBM_GM
2024-11-13 15:25:06,834 [ INFO] Computing VBM_GM
2024-11-13 15:25:06,834 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-11-13 15:25:06,834 [ INFO] Fetching one of Schaefer parcellations.
2024-11-13 15:25:06,834 - JUNIFER - INFO - Parcellation parameters:
2024-11-13 15:25:06,834 [ INFO] Parcellation parameters:
2024-11-13 15:25:06,834 - JUNIFER - INFO - resolution: 2.0
2024-11-13 15:25:06,834 [ INFO] resolution: 2.0
2024-11-13 15:25:06,834 - JUNIFER - INFO - n_rois: 1000
2024-11-13 15:25:06,834 [ INFO] n_rois: 1000
2024-11-13 15:25:06,834 - JUNIFER - INFO - yeo_networks: 7
2024-11-13 15:25:06,834 [ INFO] yeo_networks: 7
2024-11-13 15:25:06,837 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-11-13 15:25:06,837 [ INFO] Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-11-13 15:25:06,893 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-11-13 15:25:06,893 [ INFO] Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-11-13 15:25:08,013 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2
2024-11-13 15:25:08,013 [ INFO] Downloading template MNI152Lin in resolution 2
2024-11-13 15:25:08,095 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpj78wx494/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_766b07c4-a1d3-11ef-a09a-0242ac120002jzyaxve8/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpj78wx494/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_766b07c4-a1d3-11ef-a09a-0242ac120002jzyaxve8/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpj78wx494/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_766b07c4-a1d3-11ef-a09a-0242ac120002jzyaxve8/parcellation_warped.nii.gz
2024-11-13 15:25:08,095 [ INFO] antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpj78wx494/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_766b07c4-a1d3-11ef-a09a-0242ac120002jzyaxve8/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpj78wx494/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_766b07c4-a1d3-11ef-a09a-0242ac120002jzyaxve8/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpj78wx494/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_766b07c4-a1d3-11ef-a09a-0242ac120002jzyaxve8/parcellation_warped.nii.gz
2024-11-13 15:25:18,956 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
2024-11-13 15:25:18,956 [ INFO] antsApplyTransforms command succeeded with the following output:
2024-11-13 15:25:20,270 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpy7357uaw/test.sqlite (multiple output)>
2024-11-13 15:25:20,270 [ INFO] Storing in <SQLiteFeatureStorage @ /tmp/tmpy7357uaw/test.sqlite (multiple output)>
2024-11-13 15:25:20,445 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2024-11-13 15:25:20,445 [ INFO] Fitting marker Schaefer1000x7_Mean
2024-11-13 15:25:20,445 - JUNIFER - INFO - Computing VBM_GM
2024-11-13 15:25:20,445 [ INFO] Computing VBM_GM
2024-11-13 15:25:20,445 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-11-13 15:25:20,445 [ INFO] Fetching one of Schaefer parcellations.
2024-11-13 15:25:20,445 - JUNIFER - INFO - Parcellation parameters:
2024-11-13 15:25:20,445 [ INFO] Parcellation parameters:
2024-11-13 15:25:20,446 - JUNIFER - INFO - resolution: 2.0
2024-11-13 15:25:20,446 [ INFO] resolution: 2.0
2024-11-13 15:25:20,446 - JUNIFER - INFO - n_rois: 1000
2024-11-13 15:25:20,446 [ INFO] n_rois: 1000
2024-11-13 15:25:20,446 - JUNIFER - INFO - yeo_networks: 7
2024-11-13 15:25:20,446 [ INFO] yeo_networks: 7
2024-11-13 15:25:20,448 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-11-13 15:25:20,448 [ INFO] Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-11-13 15:25:20,505 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-11-13 15:25:20,505 [ INFO] Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-11-13 15:25:21,604 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2
2024-11-13 15:25:21,604 [ INFO] Downloading template MNI152Lin in resolution 2
2024-11-13 15:25:21,685 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpj78wx494/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_7e87f9e4-a1d3-11ef-a09a-0242ac120002p7lqksnd/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpj78wx494/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_7e87f9e4-a1d3-11ef-a09a-0242ac120002p7lqksnd/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpj78wx494/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_7e87f9e4-a1d3-11ef-a09a-0242ac120002p7lqksnd/parcellation_warped.nii.gz
2024-11-13 15:25:21,685 [ INFO] antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpj78wx494/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_7e87f9e4-a1d3-11ef-a09a-0242ac120002p7lqksnd/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpj78wx494/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_7e87f9e4-a1d3-11ef-a09a-0242ac120002p7lqksnd/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpj78wx494/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_7e87f9e4-a1d3-11ef-a09a-0242ac120002p7lqksnd/parcellation_warped.nii.gz
2024-11-13 15:25:32,570 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
2024-11-13 15:25:32,570 [ INFO] antsApplyTransforms command succeeded with the following output:
2024-11-13 15:25:33,810 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpy7357uaw/test.sqlite (multiple output)>
2024-11-13 15:25:33,810 [ INFO] Storing in <SQLiteFeatureStorage @ /tmp/tmpy7357uaw/test.sqlite (multiple output)>
2024-11-13 15:25:33,989 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2024-11-13 15:25:33,989 [ INFO] Fitting marker Schaefer1000x7_Std
2024-11-13 15:25:33,989 - JUNIFER - INFO - Computing VBM_GM
2024-11-13 15:25:33,989 [ INFO] Computing VBM_GM
2024-11-13 15:25:33,989 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-11-13 15:25:33,989 [ INFO] Fetching one of Schaefer parcellations.
2024-11-13 15:25:33,989 - JUNIFER - INFO - Parcellation parameters:
2024-11-13 15:25:33,989 [ INFO] Parcellation parameters:
2024-11-13 15:25:33,989 - JUNIFER - INFO - resolution: 2.0
2024-11-13 15:25:33,989 [ INFO] resolution: 2.0
2024-11-13 15:25:33,989 - JUNIFER - INFO - n_rois: 1000
2024-11-13 15:25:33,989 [ INFO] n_rois: 1000
2024-11-13 15:25:33,989 - JUNIFER - INFO - yeo_networks: 7
2024-11-13 15:25:33,989 [ INFO] yeo_networks: 7
2024-11-13 15:25:33,992 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-11-13 15:25:33,992 [ INFO] Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-11-13 15:25:34,048 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-11-13 15:25:34,048 [ INFO] Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-11-13 15:25:35,144 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2
2024-11-13 15:25:35,144 [ INFO] Downloading template MNI152Lin in resolution 2
2024-11-13 15:25:35,226 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpj78wx494/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_869a8be2-a1d3-11ef-a09a-0242ac120002698ice7t/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpj78wx494/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_869a8be2-a1d3-11ef-a09a-0242ac120002698ice7t/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpj78wx494/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_869a8be2-a1d3-11ef-a09a-0242ac120002698ice7t/parcellation_warped.nii.gz
2024-11-13 15:25:35,226 [ INFO] antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpj78wx494/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_869a8be2-a1d3-11ef-a09a-0242ac120002698ice7t/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpj78wx494/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_869a8be2-a1d3-11ef-a09a-0242ac120002698ice7t/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpj78wx494/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_869a8be2-a1d3-11ef-a09a-0242ac120002698ice7t/parcellation_warped.nii.gz
2024-11-13 15:25:46,068 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
2024-11-13 15:25:46,068 [ INFO] antsApplyTransforms command succeeded with the following output:
2024-11-13 15:25:47,420 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpy7357uaw/test.sqlite (multiple output)>
2024-11-13 15:25:47,420 [ INFO] Storing in <SQLiteFeatureStorage @ /tmp/tmpy7357uaw/test.sqlite (multiple output)>
2024-11-13 15:25:47,607 - JUNIFER - INFO - Marker collection fitting done
2024-11-13 15:25:47,607 [ INFO] Marker collection fitting done
2024-11-13 15:25:47,609 - JUNIFER - INFO - Getting element sub-04
2024-11-13 15:25:47,609 [ INFO] Getting element sub-04
2024-11-13 15:25:47,609 - JUNIFER - INFO - Fitting pipeline
2024-11-13 15:25:47,609 [ INFO] Fitting pipeline
2024-11-13 15:25:47,609 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0004_MR1/mwrc1OAS1_0004_MR1_mpr_anon_fslswapdim_bet.nii.gz
2024-11-13 15:25:47,609 [ INFO] Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0004_MR1/mwrc1OAS1_0004_MR1_mpr_anon_fslswapdim_bet.nii.gz
2024-11-13 15:25:47,609 - JUNIFER - INFO - VBM_GM is of type NIFTI
2024-11-13 15:25:47,609 [ INFO] VBM_GM is of type NIFTI
2024-11-13 15:25:47,610 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2024-11-13 15:25:47,610 [ INFO] Fitting marker Schaefer1000x7_TrimMean80
2024-11-13 15:25:47,610 - JUNIFER - INFO - Computing VBM_GM
2024-11-13 15:25:47,610 [ INFO] Computing VBM_GM
2024-11-13 15:25:47,610 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-11-13 15:25:47,610 [ INFO] Fetching one of Schaefer parcellations.
2024-11-13 15:25:47,611 - JUNIFER - INFO - Parcellation parameters:
2024-11-13 15:25:47,611 [ INFO] Parcellation parameters:
2024-11-13 15:25:47,611 - JUNIFER - INFO - resolution: 2.0
2024-11-13 15:25:47,611 [ INFO] resolution: 2.0
2024-11-13 15:25:47,611 - JUNIFER - INFO - n_rois: 1000
2024-11-13 15:25:47,611 [ INFO] n_rois: 1000
2024-11-13 15:25:47,611 - JUNIFER - INFO - yeo_networks: 7
2024-11-13 15:25:47,611 [ INFO] yeo_networks: 7
2024-11-13 15:25:47,613 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-11-13 15:25:47,613 [ INFO] Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-11-13 15:25:47,671 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-11-13 15:25:47,671 [ INFO] Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-11-13 15:25:48,828 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2
2024-11-13 15:25:48,828 [ INFO] Downloading template MNI152Lin in resolution 2
2024-11-13 15:25:48,911 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpb30ewtzz/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_8eb92432-a1d3-11ef-a09a-0242ac120002ft4nk6zq/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpb30ewtzz/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_8eb92432-a1d3-11ef-a09a-0242ac120002ft4nk6zq/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpb30ewtzz/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_8eb92432-a1d3-11ef-a09a-0242ac120002ft4nk6zq/parcellation_warped.nii.gz
2024-11-13 15:25:48,911 [ INFO] antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpb30ewtzz/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_8eb92432-a1d3-11ef-a09a-0242ac120002ft4nk6zq/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpb30ewtzz/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_8eb92432-a1d3-11ef-a09a-0242ac120002ft4nk6zq/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpb30ewtzz/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_8eb92432-a1d3-11ef-a09a-0242ac120002ft4nk6zq/parcellation_warped.nii.gz
2024-11-13 15:25:59,748 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
2024-11-13 15:25:59,748 [ INFO] antsApplyTransforms command succeeded with the following output:
2024-11-13 15:26:01,109 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpy7357uaw/test.sqlite (multiple output)>
2024-11-13 15:26:01,109 [ INFO] Storing in <SQLiteFeatureStorage @ /tmp/tmpy7357uaw/test.sqlite (multiple output)>
2024-11-13 15:26:01,291 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2024-11-13 15:26:01,291 [ INFO] Fitting marker Schaefer1000x7_Mean
2024-11-13 15:26:01,291 - JUNIFER - INFO - Computing VBM_GM
2024-11-13 15:26:01,291 [ INFO] Computing VBM_GM
2024-11-13 15:26:01,292 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-11-13 15:26:01,292 [ INFO] Fetching one of Schaefer parcellations.
2024-11-13 15:26:01,292 - JUNIFER - INFO - Parcellation parameters:
2024-11-13 15:26:01,292 [ INFO] Parcellation parameters:
2024-11-13 15:26:01,292 - JUNIFER - INFO - resolution: 2.0
2024-11-13 15:26:01,292 [ INFO] resolution: 2.0
2024-11-13 15:26:01,292 - JUNIFER - INFO - n_rois: 1000
2024-11-13 15:26:01,292 [ INFO] n_rois: 1000
2024-11-13 15:26:01,292 - JUNIFER - INFO - yeo_networks: 7
2024-11-13 15:26:01,292 [ INFO] yeo_networks: 7
2024-11-13 15:26:01,294 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-11-13 15:26:01,294 [ INFO] Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-11-13 15:26:01,352 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-11-13 15:26:01,352 [ INFO] Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-11-13 15:26:02,504 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2
2024-11-13 15:26:02,504 [ INFO] Downloading template MNI152Lin in resolution 2
2024-11-13 15:26:02,586 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpb30ewtzz/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_96e0aec8-a1d3-11ef-a09a-0242ac120002bm9h7eil/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpb30ewtzz/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_96e0aec8-a1d3-11ef-a09a-0242ac120002bm9h7eil/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpb30ewtzz/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_96e0aec8-a1d3-11ef-a09a-0242ac120002bm9h7eil/parcellation_warped.nii.gz
2024-11-13 15:26:02,586 [ INFO] antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpb30ewtzz/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_96e0aec8-a1d3-11ef-a09a-0242ac120002bm9h7eil/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpb30ewtzz/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_96e0aec8-a1d3-11ef-a09a-0242ac120002bm9h7eil/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpb30ewtzz/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_96e0aec8-a1d3-11ef-a09a-0242ac120002bm9h7eil/parcellation_warped.nii.gz
2024-11-13 15:26:13,426 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
2024-11-13 15:26:13,426 [ INFO] antsApplyTransforms command succeeded with the following output:
2024-11-13 15:26:14,657 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpy7357uaw/test.sqlite (multiple output)>
2024-11-13 15:26:14,657 [ INFO] Storing in <SQLiteFeatureStorage @ /tmp/tmpy7357uaw/test.sqlite (multiple output)>
2024-11-13 15:26:14,837 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2024-11-13 15:26:14,837 [ INFO] Fitting marker Schaefer1000x7_Std
2024-11-13 15:26:14,837 - JUNIFER - INFO - Computing VBM_GM
2024-11-13 15:26:14,837 [ INFO] Computing VBM_GM
2024-11-13 15:26:14,837 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-11-13 15:26:14,837 [ INFO] Fetching one of Schaefer parcellations.
2024-11-13 15:26:14,837 - JUNIFER - INFO - Parcellation parameters:
2024-11-13 15:26:14,837 [ INFO] Parcellation parameters:
2024-11-13 15:26:14,837 - JUNIFER - INFO - resolution: 2.0
2024-11-13 15:26:14,837 [ INFO] resolution: 2.0
2024-11-13 15:26:14,837 - JUNIFER - INFO - n_rois: 1000
2024-11-13 15:26:14,837 [ INFO] n_rois: 1000
2024-11-13 15:26:14,837 - JUNIFER - INFO - yeo_networks: 7
2024-11-13 15:26:14,837 [ INFO] yeo_networks: 7
2024-11-13 15:26:14,840 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-11-13 15:26:14,840 [ INFO] Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-11-13 15:26:14,897 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-11-13 15:26:14,897 [ INFO] Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-11-13 15:26:16,002 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2
2024-11-13 15:26:16,002 [ INFO] Downloading template MNI152Lin in resolution 2
2024-11-13 15:26:16,083 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpb30ewtzz/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_9ef3884c-a1d3-11ef-a09a-0242ac1200022qim_mp7/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpb30ewtzz/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_9ef3884c-a1d3-11ef-a09a-0242ac1200022qim_mp7/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpb30ewtzz/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_9ef3884c-a1d3-11ef-a09a-0242ac1200022qim_mp7/parcellation_warped.nii.gz
2024-11-13 15:26:16,083 [ INFO] antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpb30ewtzz/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_9ef3884c-a1d3-11ef-a09a-0242ac1200022qim_mp7/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpb30ewtzz/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_9ef3884c-a1d3-11ef-a09a-0242ac1200022qim_mp7/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpb30ewtzz/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_9ef3884c-a1d3-11ef-a09a-0242ac1200022qim_mp7/parcellation_warped.nii.gz
2024-11-13 15:26:26,899 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
2024-11-13 15:26:26,899 [ INFO] antsApplyTransforms command succeeded with the following output:
2024-11-13 15:26:28,161 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpy7357uaw/test.sqlite (multiple output)>
2024-11-13 15:26:28,161 [ INFO] Storing in <SQLiteFeatureStorage @ /tmp/tmpy7357uaw/test.sqlite (multiple output)>
2024-11-13 15:26:28,340 - JUNIFER - INFO - Marker collection fitting done
2024-11-13 15:26:28,340 [ INFO] Marker collection fitting done
2024-11-13 15:26:28,342 - JUNIFER - INFO - Getting element sub-05
2024-11-13 15:26:28,342 [ INFO] Getting element sub-05
2024-11-13 15:26:28,342 - JUNIFER - INFO - Fitting pipeline
2024-11-13 15:26:28,342 [ INFO] Fitting pipeline
2024-11-13 15:26:28,342 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0005_MR1/mwrc1OAS1_0005_MR1_mpr_anon_fslswapdim_bet.nii.gz
2024-11-13 15:26:28,342 [ INFO] Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0005_MR1/mwrc1OAS1_0005_MR1_mpr_anon_fslswapdim_bet.nii.gz
2024-11-13 15:26:28,342 - JUNIFER - INFO - VBM_GM is of type NIFTI
2024-11-13 15:26:28,342 [ INFO] VBM_GM is of type NIFTI
2024-11-13 15:26:28,343 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2024-11-13 15:26:28,343 [ INFO] Fitting marker Schaefer1000x7_TrimMean80
2024-11-13 15:26:28,343 - JUNIFER - INFO - Computing VBM_GM
2024-11-13 15:26:28,343 [ INFO] Computing VBM_GM
2024-11-13 15:26:28,344 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-11-13 15:26:28,344 [ INFO] Fetching one of Schaefer parcellations.
2024-11-13 15:26:28,344 - JUNIFER - INFO - Parcellation parameters:
2024-11-13 15:26:28,344 [ INFO] Parcellation parameters:
2024-11-13 15:26:28,344 - JUNIFER - INFO - resolution: 2.0
2024-11-13 15:26:28,344 [ INFO] resolution: 2.0
2024-11-13 15:26:28,344 - JUNIFER - INFO - n_rois: 1000
2024-11-13 15:26:28,344 [ INFO] n_rois: 1000
2024-11-13 15:26:28,344 - JUNIFER - INFO - yeo_networks: 7
2024-11-13 15:26:28,344 [ INFO] yeo_networks: 7
2024-11-13 15:26:28,346 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-11-13 15:26:28,346 [ INFO] Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-11-13 15:26:28,403 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-11-13 15:26:28,403 [ INFO] Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-11-13 15:26:29,526 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2
2024-11-13 15:26:29,526 [ INFO] Downloading template MNI152Lin in resolution 2
2024-11-13 15:26:29,608 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpo3_zq6pw/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a700687a-a1d3-11ef-a09a-0242ac1200024bm8tw_3/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpo3_zq6pw/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a700687a-a1d3-11ef-a09a-0242ac1200024bm8tw_3/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpo3_zq6pw/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a700687a-a1d3-11ef-a09a-0242ac1200024bm8tw_3/parcellation_warped.nii.gz
2024-11-13 15:26:29,608 [ INFO] antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpo3_zq6pw/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a700687a-a1d3-11ef-a09a-0242ac1200024bm8tw_3/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpo3_zq6pw/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a700687a-a1d3-11ef-a09a-0242ac1200024bm8tw_3/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpo3_zq6pw/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_a700687a-a1d3-11ef-a09a-0242ac1200024bm8tw_3/parcellation_warped.nii.gz
2024-11-13 15:26:40,465 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
2024-11-13 15:26:40,465 [ INFO] antsApplyTransforms command succeeded with the following output:
2024-11-13 15:26:41,756 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpy7357uaw/test.sqlite (multiple output)>
2024-11-13 15:26:41,756 [ INFO] Storing in <SQLiteFeatureStorage @ /tmp/tmpy7357uaw/test.sqlite (multiple output)>
2024-11-13 15:26:41,929 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2024-11-13 15:26:41,929 [ INFO] Fitting marker Schaefer1000x7_Mean
2024-11-13 15:26:41,929 - JUNIFER - INFO - Computing VBM_GM
2024-11-13 15:26:41,929 [ INFO] Computing VBM_GM
2024-11-13 15:26:41,929 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-11-13 15:26:41,929 [ INFO] Fetching one of Schaefer parcellations.
2024-11-13 15:26:41,929 - JUNIFER - INFO - Parcellation parameters:
2024-11-13 15:26:41,929 [ INFO] Parcellation parameters:
2024-11-13 15:26:41,930 - JUNIFER - INFO - resolution: 2.0
2024-11-13 15:26:41,930 [ INFO] resolution: 2.0
2024-11-13 15:26:41,930 - JUNIFER - INFO - n_rois: 1000
2024-11-13 15:26:41,930 [ INFO] n_rois: 1000
2024-11-13 15:26:41,930 - JUNIFER - INFO - yeo_networks: 7
2024-11-13 15:26:41,930 [ INFO] yeo_networks: 7
2024-11-13 15:26:41,932 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-11-13 15:26:41,932 [ INFO] Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-11-13 15:26:41,990 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-11-13 15:26:41,990 [ INFO] Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-11-13 15:26:43,110 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2
2024-11-13 15:26:43,110 [ INFO] Downloading template MNI152Lin in resolution 2
2024-11-13 15:26:43,192 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpo3_zq6pw/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_af1982b2-a1d3-11ef-a09a-0242ac120002l72v80w1/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpo3_zq6pw/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_af1982b2-a1d3-11ef-a09a-0242ac120002l72v80w1/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpo3_zq6pw/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_af1982b2-a1d3-11ef-a09a-0242ac120002l72v80w1/parcellation_warped.nii.gz
2024-11-13 15:26:43,192 [ INFO] antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpo3_zq6pw/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_af1982b2-a1d3-11ef-a09a-0242ac120002l72v80w1/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpo3_zq6pw/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_af1982b2-a1d3-11ef-a09a-0242ac120002l72v80w1/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpo3_zq6pw/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_af1982b2-a1d3-11ef-a09a-0242ac120002l72v80w1/parcellation_warped.nii.gz
2024-11-13 15:26:54,030 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
2024-11-13 15:26:54,030 [ INFO] antsApplyTransforms command succeeded with the following output:
2024-11-13 15:26:55,348 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpy7357uaw/test.sqlite (multiple output)>
2024-11-13 15:26:55,348 [ INFO] Storing in <SQLiteFeatureStorage @ /tmp/tmpy7357uaw/test.sqlite (multiple output)>
2024-11-13 15:26:55,534 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2024-11-13 15:26:55,534 [ INFO] Fitting marker Schaefer1000x7_Std
2024-11-13 15:26:55,534 - JUNIFER - INFO - Computing VBM_GM
2024-11-13 15:26:55,534 [ INFO] Computing VBM_GM
2024-11-13 15:26:55,534 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-11-13 15:26:55,534 [ INFO] Fetching one of Schaefer parcellations.
2024-11-13 15:26:55,534 - JUNIFER - INFO - Parcellation parameters:
2024-11-13 15:26:55,534 [ INFO] Parcellation parameters:
2024-11-13 15:26:55,534 - JUNIFER - INFO - resolution: 2.0
2024-11-13 15:26:55,534 [ INFO] resolution: 2.0
2024-11-13 15:26:55,534 - JUNIFER - INFO - n_rois: 1000
2024-11-13 15:26:55,534 [ INFO] n_rois: 1000
2024-11-13 15:26:55,534 - JUNIFER - INFO - yeo_networks: 7
2024-11-13 15:26:55,534 [ INFO] yeo_networks: 7
2024-11-13 15:26:55,537 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-11-13 15:26:55,537 [ INFO] Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-11-13 15:26:55,596 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-11-13 15:26:55,596 [ INFO] Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-11-13 15:26:56,771 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2
2024-11-13 15:26:56,771 [ INFO] Downloading template MNI152Lin in resolution 2
2024-11-13 15:26:56,854 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpo3_zq6pw/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_b73592ce-a1d3-11ef-a09a-0242ac120002s8d469cm/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpo3_zq6pw/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_b73592ce-a1d3-11ef-a09a-0242ac120002s8d469cm/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpo3_zq6pw/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_b73592ce-a1d3-11ef-a09a-0242ac120002s8d469cm/parcellation_warped.nii.gz
2024-11-13 15:26:56,854 [ INFO] antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpo3_zq6pw/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_b73592ce-a1d3-11ef-a09a-0242ac120002s8d469cm/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpo3_zq6pw/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_b73592ce-a1d3-11ef-a09a-0242ac120002s8d469cm/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpo3_zq6pw/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_b73592ce-a1d3-11ef-a09a-0242ac120002s8d469cm/parcellation_warped.nii.gz
2024-11-13 15:27:07,743 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
2024-11-13 15:27:07,743 [ INFO] antsApplyTransforms command succeeded with the following output:
2024-11-13 15:27:09,043 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpy7357uaw/test.sqlite (multiple output)>
2024-11-13 15:27:09,043 [ INFO] Storing in <SQLiteFeatureStorage @ /tmp/tmpy7357uaw/test.sqlite (multiple output)>
2024-11-13 15:27:09,224 - JUNIFER - INFO - Marker collection fitting done
2024-11-13 15:27:09,224 [ INFO] Marker collection fitting done
2024-11-13 15:27:09,226 - JUNIFER - INFO - Getting element sub-06
2024-11-13 15:27:09,226 [ INFO] Getting element sub-06
2024-11-13 15:27:09,226 - JUNIFER - INFO - Fitting pipeline
2024-11-13 15:27:09,226 [ INFO] Fitting pipeline
2024-11-13 15:27:09,226 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0006_MR1/mwrc1OAS1_0006_MR1_mpr_anon_fslswapdim_bet.nii.gz
2024-11-13 15:27:09,226 [ INFO] Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0006_MR1/mwrc1OAS1_0006_MR1_mpr_anon_fslswapdim_bet.nii.gz
2024-11-13 15:27:09,226 - JUNIFER - INFO - VBM_GM is of type NIFTI
2024-11-13 15:27:09,226 [ INFO] VBM_GM is of type NIFTI
2024-11-13 15:27:09,227 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2024-11-13 15:27:09,227 [ INFO] Fitting marker Schaefer1000x7_TrimMean80
2024-11-13 15:27:09,227 - JUNIFER - INFO - Computing VBM_GM
2024-11-13 15:27:09,227 [ INFO] Computing VBM_GM
2024-11-13 15:27:09,228 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-11-13 15:27:09,228 [ INFO] Fetching one of Schaefer parcellations.
2024-11-13 15:27:09,228 - JUNIFER - INFO - Parcellation parameters:
2024-11-13 15:27:09,228 [ INFO] Parcellation parameters:
2024-11-13 15:27:09,228 - JUNIFER - INFO - resolution: 2.0
2024-11-13 15:27:09,228 [ INFO] resolution: 2.0
2024-11-13 15:27:09,228 - JUNIFER - INFO - n_rois: 1000
2024-11-13 15:27:09,228 [ INFO] n_rois: 1000
2024-11-13 15:27:09,228 - JUNIFER - INFO - yeo_networks: 7
2024-11-13 15:27:09,228 [ INFO] yeo_networks: 7
2024-11-13 15:27:09,230 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-11-13 15:27:09,230 [ INFO] Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-11-13 15:27:09,287 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-11-13 15:27:09,287 [ INFO] Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-11-13 15:27:10,420 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2
2024-11-13 15:27:10,420 [ INFO] Downloading template MNI152Lin in resolution 2
2024-11-13 15:27:10,503 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp2wgbwg6c/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_bf5ee11c-a1d3-11ef-a09a-0242ac120002a7wn8s30/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp2wgbwg6c/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_bf5ee11c-a1d3-11ef-a09a-0242ac120002a7wn8s30/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmp2wgbwg6c/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_bf5ee11c-a1d3-11ef-a09a-0242ac120002a7wn8s30/parcellation_warped.nii.gz
2024-11-13 15:27:10,503 [ INFO] antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp2wgbwg6c/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_bf5ee11c-a1d3-11ef-a09a-0242ac120002a7wn8s30/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp2wgbwg6c/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_bf5ee11c-a1d3-11ef-a09a-0242ac120002a7wn8s30/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmp2wgbwg6c/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_bf5ee11c-a1d3-11ef-a09a-0242ac120002a7wn8s30/parcellation_warped.nii.gz
2024-11-13 15:27:21,430 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
2024-11-13 15:27:21,430 [ INFO] antsApplyTransforms command succeeded with the following output:
2024-11-13 15:27:22,719 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpy7357uaw/test.sqlite (multiple output)>
2024-11-13 15:27:22,719 [ INFO] Storing in <SQLiteFeatureStorage @ /tmp/tmpy7357uaw/test.sqlite (multiple output)>
2024-11-13 15:27:22,897 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2024-11-13 15:27:22,897 [ INFO] Fitting marker Schaefer1000x7_Mean
2024-11-13 15:27:22,897 - JUNIFER - INFO - Computing VBM_GM
2024-11-13 15:27:22,897 [ INFO] Computing VBM_GM
2024-11-13 15:27:22,898 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-11-13 15:27:22,898 [ INFO] Fetching one of Schaefer parcellations.
2024-11-13 15:27:22,898 - JUNIFER - INFO - Parcellation parameters:
2024-11-13 15:27:22,898 [ INFO] Parcellation parameters:
2024-11-13 15:27:22,898 - JUNIFER - INFO - resolution: 2.0
2024-11-13 15:27:22,898 [ INFO] resolution: 2.0
2024-11-13 15:27:22,898 - JUNIFER - INFO - n_rois: 1000
2024-11-13 15:27:22,898 [ INFO] n_rois: 1000
2024-11-13 15:27:22,898 - JUNIFER - INFO - yeo_networks: 7
2024-11-13 15:27:22,898 [ INFO] yeo_networks: 7
2024-11-13 15:27:22,900 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-11-13 15:27:22,900 [ INFO] Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-11-13 15:27:22,959 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-11-13 15:27:22,959 [ INFO] Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-11-13 15:27:24,100 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2
2024-11-13 15:27:24,100 [ INFO] Downloading template MNI152Lin in resolution 2
2024-11-13 15:27:24,182 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp2wgbwg6c/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_c784e076-a1d3-11ef-a09a-0242ac120002n0erzdf8/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp2wgbwg6c/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_c784e076-a1d3-11ef-a09a-0242ac120002n0erzdf8/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmp2wgbwg6c/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_c784e076-a1d3-11ef-a09a-0242ac120002n0erzdf8/parcellation_warped.nii.gz
2024-11-13 15:27:24,182 [ INFO] antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp2wgbwg6c/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_c784e076-a1d3-11ef-a09a-0242ac120002n0erzdf8/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp2wgbwg6c/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_c784e076-a1d3-11ef-a09a-0242ac120002n0erzdf8/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmp2wgbwg6c/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_c784e076-a1d3-11ef-a09a-0242ac120002n0erzdf8/parcellation_warped.nii.gz
2024-11-13 15:27:35,014 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
2024-11-13 15:27:35,014 [ INFO] antsApplyTransforms command succeeded with the following output:
2024-11-13 15:27:36,223 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpy7357uaw/test.sqlite (multiple output)>
2024-11-13 15:27:36,223 [ INFO] Storing in <SQLiteFeatureStorage @ /tmp/tmpy7357uaw/test.sqlite (multiple output)>
2024-11-13 15:27:36,400 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2024-11-13 15:27:36,400 [ INFO] Fitting marker Schaefer1000x7_Std
2024-11-13 15:27:36,400 - JUNIFER - INFO - Computing VBM_GM
2024-11-13 15:27:36,400 [ INFO] Computing VBM_GM
2024-11-13 15:27:36,401 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-11-13 15:27:36,401 [ INFO] Fetching one of Schaefer parcellations.
2024-11-13 15:27:36,401 - JUNIFER - INFO - Parcellation parameters:
2024-11-13 15:27:36,401 [ INFO] Parcellation parameters:
2024-11-13 15:27:36,401 - JUNIFER - INFO - resolution: 2.0
2024-11-13 15:27:36,401 [ INFO] resolution: 2.0
2024-11-13 15:27:36,401 - JUNIFER - INFO - n_rois: 1000
2024-11-13 15:27:36,401 [ INFO] n_rois: 1000
2024-11-13 15:27:36,401 - JUNIFER - INFO - yeo_networks: 7
2024-11-13 15:27:36,401 [ INFO] yeo_networks: 7
2024-11-13 15:27:36,403 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-11-13 15:27:36,403 [ INFO] Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-11-13 15:27:36,461 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-11-13 15:27:36,461 [ INFO] Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-11-13 15:27:37,571 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2
2024-11-13 15:27:37,571 [ INFO] Downloading template MNI152Lin in resolution 2
2024-11-13 15:27:37,653 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp2wgbwg6c/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_cf91296e-a1d3-11ef-a09a-0242ac120002d8nwmwno/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp2wgbwg6c/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_cf91296e-a1d3-11ef-a09a-0242ac120002d8nwmwno/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmp2wgbwg6c/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_cf91296e-a1d3-11ef-a09a-0242ac120002d8nwmwno/parcellation_warped.nii.gz
2024-11-13 15:27:37,653 [ INFO] antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp2wgbwg6c/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_cf91296e-a1d3-11ef-a09a-0242ac120002d8nwmwno/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp2wgbwg6c/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_cf91296e-a1d3-11ef-a09a-0242ac120002d8nwmwno/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmp2wgbwg6c/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_cf91296e-a1d3-11ef-a09a-0242ac120002d8nwmwno/parcellation_warped.nii.gz
2024-11-13 15:27:48,588 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
2024-11-13 15:27:48,588 [ INFO] antsApplyTransforms command succeeded with the following output:
2024-11-13 15:27:49,923 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpy7357uaw/test.sqlite (multiple output)>
2024-11-13 15:27:49,923 [ INFO] Storing in <SQLiteFeatureStorage @ /tmp/tmpy7357uaw/test.sqlite (multiple output)>
2024-11-13 15:27:50,108 - JUNIFER - INFO - Marker collection fitting done
2024-11-13 15:27:50,108 [ INFO] Marker collection fitting done
2024-11-13 15:27:50,110 - JUNIFER - INFO - Getting element sub-07
2024-11-13 15:27:50,110 [ INFO] Getting element sub-07
2024-11-13 15:27:50,110 - JUNIFER - INFO - Fitting pipeline
2024-11-13 15:27:50,110 [ INFO] Fitting pipeline
2024-11-13 15:27:50,110 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0007_MR1/mwrc1OAS1_0007_MR1_mpr_anon_fslswapdim_bet.nii.gz
2024-11-13 15:27:50,110 [ INFO] Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0007_MR1/mwrc1OAS1_0007_MR1_mpr_anon_fslswapdim_bet.nii.gz
2024-11-13 15:27:50,110 - JUNIFER - INFO - VBM_GM is of type NIFTI
2024-11-13 15:27:50,110 [ INFO] VBM_GM is of type NIFTI
2024-11-13 15:27:50,111 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2024-11-13 15:27:50,111 [ INFO] Fitting marker Schaefer1000x7_TrimMean80
2024-11-13 15:27:50,111 - JUNIFER - INFO - Computing VBM_GM
2024-11-13 15:27:50,111 [ INFO] Computing VBM_GM
2024-11-13 15:27:50,111 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-11-13 15:27:50,111 [ INFO] Fetching one of Schaefer parcellations.
2024-11-13 15:27:50,111 - JUNIFER - INFO - Parcellation parameters:
2024-11-13 15:27:50,111 [ INFO] Parcellation parameters:
2024-11-13 15:27:50,111 - JUNIFER - INFO - resolution: 2.0
2024-11-13 15:27:50,111 [ INFO] resolution: 2.0
2024-11-13 15:27:50,112 - JUNIFER - INFO - n_rois: 1000
2024-11-13 15:27:50,112 [ INFO] n_rois: 1000
2024-11-13 15:27:50,112 - JUNIFER - INFO - yeo_networks: 7
2024-11-13 15:27:50,112 [ INFO] yeo_networks: 7
2024-11-13 15:27:50,114 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-11-13 15:27:50,114 [ INFO] Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-11-13 15:27:50,171 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-11-13 15:27:50,171 [ INFO] Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-11-13 15:27:51,286 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2
2024-11-13 15:27:51,286 [ INFO] Downloading template MNI152Lin in resolution 2
2024-11-13 15:27:51,368 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpr84nsbqh/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_d7bd3f1a-a1d3-11ef-a09a-0242ac120002ketg3vpv/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpr84nsbqh/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_d7bd3f1a-a1d3-11ef-a09a-0242ac120002ketg3vpv/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpr84nsbqh/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_d7bd3f1a-a1d3-11ef-a09a-0242ac120002ketg3vpv/parcellation_warped.nii.gz
2024-11-13 15:27:51,368 [ INFO] antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpr84nsbqh/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_d7bd3f1a-a1d3-11ef-a09a-0242ac120002ketg3vpv/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpr84nsbqh/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_d7bd3f1a-a1d3-11ef-a09a-0242ac120002ketg3vpv/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpr84nsbqh/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_d7bd3f1a-a1d3-11ef-a09a-0242ac120002ketg3vpv/parcellation_warped.nii.gz
2024-11-13 15:28:02,256 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
2024-11-13 15:28:02,256 [ INFO] antsApplyTransforms command succeeded with the following output:
2024-11-13 15:28:03,543 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpy7357uaw/test.sqlite (multiple output)>
2024-11-13 15:28:03,543 [ INFO] Storing in <SQLiteFeatureStorage @ /tmp/tmpy7357uaw/test.sqlite (multiple output)>
2024-11-13 15:28:03,717 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2024-11-13 15:28:03,717 [ INFO] Fitting marker Schaefer1000x7_Mean
2024-11-13 15:28:03,717 - JUNIFER - INFO - Computing VBM_GM
2024-11-13 15:28:03,717 [ INFO] Computing VBM_GM
2024-11-13 15:28:03,717 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-11-13 15:28:03,717 [ INFO] Fetching one of Schaefer parcellations.
2024-11-13 15:28:03,717 - JUNIFER - INFO - Parcellation parameters:
2024-11-13 15:28:03,717 [ INFO] Parcellation parameters:
2024-11-13 15:28:03,717 - JUNIFER - INFO - resolution: 2.0
2024-11-13 15:28:03,717 [ INFO] resolution: 2.0
2024-11-13 15:28:03,717 - JUNIFER - INFO - n_rois: 1000
2024-11-13 15:28:03,717 [ INFO] n_rois: 1000
2024-11-13 15:28:03,717 - JUNIFER - INFO - yeo_networks: 7
2024-11-13 15:28:03,717 [ INFO] yeo_networks: 7
2024-11-13 15:28:03,720 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-11-13 15:28:03,720 [ INFO] Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-11-13 15:28:03,777 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-11-13 15:28:03,777 [ INFO] Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-11-13 15:28:04,885 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2
2024-11-13 15:28:04,885 [ INFO] Downloading template MNI152Lin in resolution 2
2024-11-13 15:28:04,967 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpr84nsbqh/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_dfd94b26-a1d3-11ef-a09a-0242ac120002_7qjoli4/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpr84nsbqh/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_dfd94b26-a1d3-11ef-a09a-0242ac120002_7qjoli4/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpr84nsbqh/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_dfd94b26-a1d3-11ef-a09a-0242ac120002_7qjoli4/parcellation_warped.nii.gz
2024-11-13 15:28:04,967 [ INFO] antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpr84nsbqh/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_dfd94b26-a1d3-11ef-a09a-0242ac120002_7qjoli4/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpr84nsbqh/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_dfd94b26-a1d3-11ef-a09a-0242ac120002_7qjoli4/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpr84nsbqh/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_dfd94b26-a1d3-11ef-a09a-0242ac120002_7qjoli4/parcellation_warped.nii.gz
2024-11-13 15:28:15,867 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
2024-11-13 15:28:15,867 [ INFO] antsApplyTransforms command succeeded with the following output:
2024-11-13 15:28:17,146 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpy7357uaw/test.sqlite (multiple output)>
2024-11-13 15:28:17,146 [ INFO] Storing in <SQLiteFeatureStorage @ /tmp/tmpy7357uaw/test.sqlite (multiple output)>
2024-11-13 15:28:17,322 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2024-11-13 15:28:17,322 [ INFO] Fitting marker Schaefer1000x7_Std
2024-11-13 15:28:17,323 - JUNIFER - INFO - Computing VBM_GM
2024-11-13 15:28:17,323 [ INFO] Computing VBM_GM
2024-11-13 15:28:17,323 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-11-13 15:28:17,323 [ INFO] Fetching one of Schaefer parcellations.
2024-11-13 15:28:17,323 - JUNIFER - INFO - Parcellation parameters:
2024-11-13 15:28:17,323 [ INFO] Parcellation parameters:
2024-11-13 15:28:17,323 - JUNIFER - INFO - resolution: 2.0
2024-11-13 15:28:17,323 [ INFO] resolution: 2.0
2024-11-13 15:28:17,323 - JUNIFER - INFO - n_rois: 1000
2024-11-13 15:28:17,323 [ INFO] n_rois: 1000
2024-11-13 15:28:17,323 - JUNIFER - INFO - yeo_networks: 7
2024-11-13 15:28:17,323 [ INFO] yeo_networks: 7
2024-11-13 15:28:17,325 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-11-13 15:28:17,325 [ INFO] Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-11-13 15:28:17,383 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-11-13 15:28:17,383 [ INFO] Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-11-13 15:28:18,509 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2
2024-11-13 15:28:18,509 [ INFO] Downloading template MNI152Lin in resolution 2
2024-11-13 15:28:18,591 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpr84nsbqh/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_e7f5607e-a1d3-11ef-a09a-0242ac120002jo2w77qc/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpr84nsbqh/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_e7f5607e-a1d3-11ef-a09a-0242ac120002jo2w77qc/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpr84nsbqh/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_e7f5607e-a1d3-11ef-a09a-0242ac120002jo2w77qc/parcellation_warped.nii.gz
2024-11-13 15:28:18,591 [ INFO] antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpr84nsbqh/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_e7f5607e-a1d3-11ef-a09a-0242ac120002jo2w77qc/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpr84nsbqh/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_e7f5607e-a1d3-11ef-a09a-0242ac120002jo2w77qc/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpr84nsbqh/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_e7f5607e-a1d3-11ef-a09a-0242ac120002jo2w77qc/parcellation_warped.nii.gz
2024-11-13 15:28:29,500 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
2024-11-13 15:28:29,500 [ INFO] antsApplyTransforms command succeeded with the following output:
2024-11-13 15:28:30,846 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpy7357uaw/test.sqlite (multiple output)>
2024-11-13 15:28:30,846 [ INFO] Storing in <SQLiteFeatureStorage @ /tmp/tmpy7357uaw/test.sqlite (multiple output)>
2024-11-13 15:28:31,036 - JUNIFER - INFO - Marker collection fitting done
2024-11-13 15:28:31,036 [ INFO] Marker collection fitting done
2024-11-13 15:28:31,038 - JUNIFER - INFO - Getting element sub-08
2024-11-13 15:28:31,038 [ INFO] Getting element sub-08
2024-11-13 15:28:31,038 - JUNIFER - INFO - Fitting pipeline
2024-11-13 15:28:31,038 [ INFO] Fitting pipeline
2024-11-13 15:28:31,038 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0009_MR1/mwrc1OAS1_0009_MR1_mpr_anon_fslswapdim_bet.nii.gz
2024-11-13 15:28:31,038 [ INFO] Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0009_MR1/mwrc1OAS1_0009_MR1_mpr_anon_fslswapdim_bet.nii.gz
2024-11-13 15:28:31,038 - JUNIFER - INFO - VBM_GM is of type NIFTI
2024-11-13 15:28:31,038 [ INFO] VBM_GM is of type NIFTI
2024-11-13 15:28:31,039 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2024-11-13 15:28:31,039 [ INFO] Fitting marker Schaefer1000x7_TrimMean80
2024-11-13 15:28:31,039 - JUNIFER - INFO - Computing VBM_GM
2024-11-13 15:28:31,039 [ INFO] Computing VBM_GM
2024-11-13 15:28:31,039 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-11-13 15:28:31,039 [ INFO] Fetching one of Schaefer parcellations.
2024-11-13 15:28:31,039 - JUNIFER - INFO - Parcellation parameters:
2024-11-13 15:28:31,039 [ INFO] Parcellation parameters:
2024-11-13 15:28:31,039 - JUNIFER - INFO - resolution: 2.0
2024-11-13 15:28:31,039 [ INFO] resolution: 2.0
2024-11-13 15:28:31,040 - JUNIFER - INFO - n_rois: 1000
2024-11-13 15:28:31,040 [ INFO] n_rois: 1000
2024-11-13 15:28:31,040 - JUNIFER - INFO - yeo_networks: 7
2024-11-13 15:28:31,040 [ INFO] yeo_networks: 7
2024-11-13 15:28:31,042 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-11-13 15:28:31,042 [ INFO] Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-11-13 15:28:31,100 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-11-13 15:28:31,100 [ INFO] Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-11-13 15:28:32,271 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2
2024-11-13 15:28:32,271 [ INFO] Downloading template MNI152Lin in resolution 2
2024-11-13 15:28:32,354 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpw7_ky4_0/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_f0226828-a1d3-11ef-a09a-0242ac1200027t_a8rvw/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpw7_ky4_0/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_f0226828-a1d3-11ef-a09a-0242ac1200027t_a8rvw/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpw7_ky4_0/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_f0226828-a1d3-11ef-a09a-0242ac1200027t_a8rvw/parcellation_warped.nii.gz
2024-11-13 15:28:32,354 [ INFO] antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpw7_ky4_0/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_f0226828-a1d3-11ef-a09a-0242ac1200027t_a8rvw/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpw7_ky4_0/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_f0226828-a1d3-11ef-a09a-0242ac1200027t_a8rvw/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpw7_ky4_0/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_f0226828-a1d3-11ef-a09a-0242ac1200027t_a8rvw/parcellation_warped.nii.gz
2024-11-13 15:28:43,225 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
2024-11-13 15:28:43,225 [ INFO] antsApplyTransforms command succeeded with the following output:
2024-11-13 15:28:44,623 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpy7357uaw/test.sqlite (multiple output)>
2024-11-13 15:28:44,623 [ INFO] Storing in <SQLiteFeatureStorage @ /tmp/tmpy7357uaw/test.sqlite (multiple output)>
2024-11-13 15:28:44,805 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2024-11-13 15:28:44,805 [ INFO] Fitting marker Schaefer1000x7_Mean
2024-11-13 15:28:44,805 - JUNIFER - INFO - Computing VBM_GM
2024-11-13 15:28:44,805 [ INFO] Computing VBM_GM
2024-11-13 15:28:44,805 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-11-13 15:28:44,805 [ INFO] Fetching one of Schaefer parcellations.
2024-11-13 15:28:44,805 - JUNIFER - INFO - Parcellation parameters:
2024-11-13 15:28:44,805 [ INFO] Parcellation parameters:
2024-11-13 15:28:44,805 - JUNIFER - INFO - resolution: 2.0
2024-11-13 15:28:44,805 [ INFO] resolution: 2.0
2024-11-13 15:28:44,805 - JUNIFER - INFO - n_rois: 1000
2024-11-13 15:28:44,805 [ INFO] n_rois: 1000
2024-11-13 15:28:44,806 - JUNIFER - INFO - yeo_networks: 7
2024-11-13 15:28:44,806 [ INFO] yeo_networks: 7
2024-11-13 15:28:44,808 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-11-13 15:28:44,808 [ INFO] Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-11-13 15:28:44,867 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-11-13 15:28:44,867 [ INFO] Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-11-13 15:28:46,053 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2
2024-11-13 15:28:46,053 [ INFO] Downloading template MNI152Lin in resolution 2
2024-11-13 15:28:46,136 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpw7_ky4_0/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_f857062a-a1d3-11ef-a09a-0242ac120002uepenoji/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpw7_ky4_0/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_f857062a-a1d3-11ef-a09a-0242ac120002uepenoji/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpw7_ky4_0/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_f857062a-a1d3-11ef-a09a-0242ac120002uepenoji/parcellation_warped.nii.gz
2024-11-13 15:28:46,136 [ INFO] antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpw7_ky4_0/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_f857062a-a1d3-11ef-a09a-0242ac120002uepenoji/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpw7_ky4_0/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_f857062a-a1d3-11ef-a09a-0242ac120002uepenoji/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpw7_ky4_0/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_f857062a-a1d3-11ef-a09a-0242ac120002uepenoji/parcellation_warped.nii.gz
2024-11-13 15:28:57,067 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
2024-11-13 15:28:57,067 [ INFO] antsApplyTransforms command succeeded with the following output:
2024-11-13 15:28:58,467 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpy7357uaw/test.sqlite (multiple output)>
2024-11-13 15:28:58,467 [ INFO] Storing in <SQLiteFeatureStorage @ /tmp/tmpy7357uaw/test.sqlite (multiple output)>
2024-11-13 15:28:58,649 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2024-11-13 15:28:58,649 [ INFO] Fitting marker Schaefer1000x7_Std
2024-11-13 15:28:58,650 - JUNIFER - INFO - Computing VBM_GM
2024-11-13 15:28:58,650 [ INFO] Computing VBM_GM
2024-11-13 15:28:58,650 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-11-13 15:28:58,650 [ INFO] Fetching one of Schaefer parcellations.
2024-11-13 15:28:58,650 - JUNIFER - INFO - Parcellation parameters:
2024-11-13 15:28:58,650 [ INFO] Parcellation parameters:
2024-11-13 15:28:58,650 - JUNIFER - INFO - resolution: 2.0
2024-11-13 15:28:58,650 [ INFO] resolution: 2.0
2024-11-13 15:28:58,650 - JUNIFER - INFO - n_rois: 1000
2024-11-13 15:28:58,650 [ INFO] n_rois: 1000
2024-11-13 15:28:58,650 - JUNIFER - INFO - yeo_networks: 7
2024-11-13 15:28:58,650 [ INFO] yeo_networks: 7
2024-11-13 15:28:58,652 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-11-13 15:28:58,652 [ INFO] Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-11-13 15:28:58,710 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-11-13 15:28:58,710 [ INFO] Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-11-13 15:28:59,875 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2
2024-11-13 15:28:59,875 [ INFO] Downloading template MNI152Lin in resolution 2
2024-11-13 15:28:59,958 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpw7_ky4_0/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_00977072-a1d4-11ef-a09a-0242ac120002c7jmv4m4/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpw7_ky4_0/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_00977072-a1d4-11ef-a09a-0242ac120002c7jmv4m4/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpw7_ky4_0/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_00977072-a1d4-11ef-a09a-0242ac120002c7jmv4m4/parcellation_warped.nii.gz
2024-11-13 15:28:59,958 [ INFO] antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmpw7_ky4_0/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_00977072-a1d4-11ef-a09a-0242ac120002c7jmv4m4/prewarp_parcellation.nii.gz -r /tmp/junifer/tmpw7_ky4_0/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_00977072-a1d4-11ef-a09a-0242ac120002c7jmv4m4/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmpw7_ky4_0/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_00977072-a1d4-11ef-a09a-0242ac120002c7jmv4m4/parcellation_warped.nii.gz
2024-11-13 15:29:10,811 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
2024-11-13 15:29:10,811 [ INFO] antsApplyTransforms command succeeded with the following output:
2024-11-13 15:29:12,076 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpy7357uaw/test.sqlite (multiple output)>
2024-11-13 15:29:12,076 [ INFO] Storing in <SQLiteFeatureStorage @ /tmp/tmpy7357uaw/test.sqlite (multiple output)>
2024-11-13 15:29:12,260 - JUNIFER - INFO - Marker collection fitting done
2024-11-13 15:29:12,260 [ INFO] Marker collection fitting done
2024-11-13 15:29:12,262 - JUNIFER - INFO - Getting element sub-09
2024-11-13 15:29:12,262 [ INFO] Getting element sub-09
2024-11-13 15:29:12,262 - JUNIFER - INFO - Fitting pipeline
2024-11-13 15:29:12,262 [ INFO] Fitting pipeline
2024-11-13 15:29:12,262 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0010_MR1/mwrc1OAS1_0010_MR1_mpr_anon_fslswapdim_bet.nii.gz
2024-11-13 15:29:12,262 [ INFO] Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0010_MR1/mwrc1OAS1_0010_MR1_mpr_anon_fslswapdim_bet.nii.gz
2024-11-13 15:29:12,262 - JUNIFER - INFO - VBM_GM is of type NIFTI
2024-11-13 15:29:12,262 [ INFO] VBM_GM is of type NIFTI
2024-11-13 15:29:12,263 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2024-11-13 15:29:12,263 [ INFO] Fitting marker Schaefer1000x7_TrimMean80
2024-11-13 15:29:12,264 - JUNIFER - INFO - Computing VBM_GM
2024-11-13 15:29:12,264 [ INFO] Computing VBM_GM
2024-11-13 15:29:12,264 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-11-13 15:29:12,264 [ INFO] Fetching one of Schaefer parcellations.
2024-11-13 15:29:12,264 - JUNIFER - INFO - Parcellation parameters:
2024-11-13 15:29:12,264 [ INFO] Parcellation parameters:
2024-11-13 15:29:12,264 - JUNIFER - INFO - resolution: 2.0
2024-11-13 15:29:12,264 [ INFO] resolution: 2.0
2024-11-13 15:29:12,264 - JUNIFER - INFO - n_rois: 1000
2024-11-13 15:29:12,264 [ INFO] n_rois: 1000
2024-11-13 15:29:12,264 - JUNIFER - INFO - yeo_networks: 7
2024-11-13 15:29:12,264 [ INFO] yeo_networks: 7
2024-11-13 15:29:12,266 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-11-13 15:29:12,266 [ INFO] Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-11-13 15:29:12,323 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-11-13 15:29:12,323 [ INFO] Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-11-13 15:29:13,449 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2
2024-11-13 15:29:13,449 [ INFO] Downloading template MNI152Lin in resolution 2
2024-11-13 15:29:13,530 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp8r4v_zok/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_08b4a3ec-a1d4-11ef-a09a-0242ac120002nasn944g/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp8r4v_zok/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_08b4a3ec-a1d4-11ef-a09a-0242ac120002nasn944g/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmp8r4v_zok/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_08b4a3ec-a1d4-11ef-a09a-0242ac120002nasn944g/parcellation_warped.nii.gz
2024-11-13 15:29:13,530 [ INFO] antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp8r4v_zok/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_08b4a3ec-a1d4-11ef-a09a-0242ac120002nasn944g/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp8r4v_zok/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_08b4a3ec-a1d4-11ef-a09a-0242ac120002nasn944g/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmp8r4v_zok/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_08b4a3ec-a1d4-11ef-a09a-0242ac120002nasn944g/parcellation_warped.nii.gz
2024-11-13 15:29:24,523 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
2024-11-13 15:29:24,523 [ INFO] antsApplyTransforms command succeeded with the following output:
2024-11-13 15:29:25,840 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpy7357uaw/test.sqlite (multiple output)>
2024-11-13 15:29:25,840 [ INFO] Storing in <SQLiteFeatureStorage @ /tmp/tmpy7357uaw/test.sqlite (multiple output)>
2024-11-13 15:29:26,023 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2024-11-13 15:29:26,023 [ INFO] Fitting marker Schaefer1000x7_Mean
2024-11-13 15:29:26,023 - JUNIFER - INFO - Computing VBM_GM
2024-11-13 15:29:26,023 [ INFO] Computing VBM_GM
2024-11-13 15:29:26,024 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-11-13 15:29:26,024 [ INFO] Fetching one of Schaefer parcellations.
2024-11-13 15:29:26,024 - JUNIFER - INFO - Parcellation parameters:
2024-11-13 15:29:26,024 [ INFO] Parcellation parameters:
2024-11-13 15:29:26,024 - JUNIFER - INFO - resolution: 2.0
2024-11-13 15:29:26,024 [ INFO] resolution: 2.0
2024-11-13 15:29:26,024 - JUNIFER - INFO - n_rois: 1000
2024-11-13 15:29:26,024 [ INFO] n_rois: 1000
2024-11-13 15:29:26,024 - JUNIFER - INFO - yeo_networks: 7
2024-11-13 15:29:26,024 [ INFO] yeo_networks: 7
2024-11-13 15:29:26,026 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-11-13 15:29:26,026 [ INFO] Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-11-13 15:29:26,083 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-11-13 15:29:26,083 [ INFO] Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-11-13 15:29:27,221 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2
2024-11-13 15:29:27,221 [ INFO] Downloading template MNI152Lin in resolution 2
2024-11-13 15:29:27,306 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp8r4v_zok/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_10e8220a-a1d4-11ef-a09a-0242ac120002v2q5we13/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp8r4v_zok/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_10e8220a-a1d4-11ef-a09a-0242ac120002v2q5we13/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmp8r4v_zok/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_10e8220a-a1d4-11ef-a09a-0242ac120002v2q5we13/parcellation_warped.nii.gz
2024-11-13 15:29:27,306 [ INFO] antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp8r4v_zok/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_10e8220a-a1d4-11ef-a09a-0242ac120002v2q5we13/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp8r4v_zok/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_10e8220a-a1d4-11ef-a09a-0242ac120002v2q5we13/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmp8r4v_zok/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_10e8220a-a1d4-11ef-a09a-0242ac120002v2q5we13/parcellation_warped.nii.gz
2024-11-13 15:29:38,284 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
2024-11-13 15:29:38,284 [ INFO] antsApplyTransforms command succeeded with the following output:
2024-11-13 15:29:39,628 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpy7357uaw/test.sqlite (multiple output)>
2024-11-13 15:29:39,628 [ INFO] Storing in <SQLiteFeatureStorage @ /tmp/tmpy7357uaw/test.sqlite (multiple output)>
2024-11-13 15:29:39,809 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2024-11-13 15:29:39,809 [ INFO] Fitting marker Schaefer1000x7_Std
2024-11-13 15:29:39,809 - JUNIFER - INFO - Computing VBM_GM
2024-11-13 15:29:39,809 [ INFO] Computing VBM_GM
2024-11-13 15:29:39,809 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-11-13 15:29:39,809 [ INFO] Fetching one of Schaefer parcellations.
2024-11-13 15:29:39,809 - JUNIFER - INFO - Parcellation parameters:
2024-11-13 15:29:39,809 [ INFO] Parcellation parameters:
2024-11-13 15:29:39,809 - JUNIFER - INFO - resolution: 2.0
2024-11-13 15:29:39,809 [ INFO] resolution: 2.0
2024-11-13 15:29:39,809 - JUNIFER - INFO - n_rois: 1000
2024-11-13 15:29:39,809 [ INFO] n_rois: 1000
2024-11-13 15:29:39,809 - JUNIFER - INFO - yeo_networks: 7
2024-11-13 15:29:39,809 [ INFO] yeo_networks: 7
2024-11-13 15:29:39,812 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-11-13 15:29:39,812 [ INFO] Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-11-13 15:29:39,869 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-11-13 15:29:39,869 [ INFO] Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-11-13 15:29:41,030 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2
2024-11-13 15:29:41,030 [ INFO] Downloading template MNI152Lin in resolution 2
2024-11-13 15:29:41,112 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp8r4v_zok/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_191fbf3c-a1d4-11ef-a09a-0242ac120002ny64dgw2/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp8r4v_zok/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_191fbf3c-a1d4-11ef-a09a-0242ac120002ny64dgw2/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmp8r4v_zok/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_191fbf3c-a1d4-11ef-a09a-0242ac120002ny64dgw2/parcellation_warped.nii.gz
2024-11-13 15:29:41,112 [ INFO] antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp8r4v_zok/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_191fbf3c-a1d4-11ef-a09a-0242ac120002ny64dgw2/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp8r4v_zok/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_191fbf3c-a1d4-11ef-a09a-0242ac120002ny64dgw2/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmp8r4v_zok/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_191fbf3c-a1d4-11ef-a09a-0242ac120002ny64dgw2/parcellation_warped.nii.gz
2024-11-13 15:29:51,913 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
2024-11-13 15:29:51,913 [ INFO] antsApplyTransforms command succeeded with the following output:
2024-11-13 15:29:53,311 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpy7357uaw/test.sqlite (multiple output)>
2024-11-13 15:29:53,311 [ INFO] Storing in <SQLiteFeatureStorage @ /tmp/tmpy7357uaw/test.sqlite (multiple output)>
2024-11-13 15:29:53,512 - JUNIFER - INFO - Marker collection fitting done
2024-11-13 15:29:53,512 [ INFO] Marker collection fitting done
2024-11-13 15:29:53,514 - JUNIFER - INFO - Getting element sub-10
2024-11-13 15:29:53,514 [ INFO] Getting element sub-10
2024-11-13 15:29:53,514 - JUNIFER - INFO - Fitting pipeline
2024-11-13 15:29:53,514 [ INFO] Fitting pipeline
2024-11-13 15:29:53,514 - JUNIFER - INFO - Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0011_MR1/mwrc1OAS1_0011_MR1_mpr_anon_fslswapdim_bet.nii.gz
2024-11-13 15:29:53,514 [ INFO] Reading VBM_GM from /github/home/nilearn_data/oasis1/OAS1_0011_MR1/mwrc1OAS1_0011_MR1_mpr_anon_fslswapdim_bet.nii.gz
2024-11-13 15:29:53,515 - JUNIFER - INFO - VBM_GM is of type NIFTI
2024-11-13 15:29:53,515 [ INFO] VBM_GM is of type NIFTI
2024-11-13 15:29:53,516 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2024-11-13 15:29:53,516 [ INFO] Fitting marker Schaefer1000x7_TrimMean80
2024-11-13 15:29:53,516 - JUNIFER - INFO - Computing VBM_GM
2024-11-13 15:29:53,516 [ INFO] Computing VBM_GM
2024-11-13 15:29:53,516 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-11-13 15:29:53,516 [ INFO] Fetching one of Schaefer parcellations.
2024-11-13 15:29:53,516 - JUNIFER - INFO - Parcellation parameters:
2024-11-13 15:29:53,516 [ INFO] Parcellation parameters:
2024-11-13 15:29:53,516 - JUNIFER - INFO - resolution: 2.0
2024-11-13 15:29:53,516 [ INFO] resolution: 2.0
2024-11-13 15:29:53,516 - JUNIFER - INFO - n_rois: 1000
2024-11-13 15:29:53,516 [ INFO] n_rois: 1000
2024-11-13 15:29:53,516 - JUNIFER - INFO - yeo_networks: 7
2024-11-13 15:29:53,516 [ INFO] yeo_networks: 7
2024-11-13 15:29:53,519 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-11-13 15:29:53,519 [ INFO] Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-11-13 15:29:53,575 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-11-13 15:29:53,575 [ INFO] Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-11-13 15:29:54,738 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2
2024-11-13 15:29:54,738 [ INFO] Downloading template MNI152Lin in resolution 2
2024-11-13 15:29:54,820 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp3rotkp9x/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_214b221e-a1d4-11ef-a09a-0242ac120002ftp0155l/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp3rotkp9x/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_214b221e-a1d4-11ef-a09a-0242ac120002ftp0155l/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmp3rotkp9x/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_214b221e-a1d4-11ef-a09a-0242ac120002ftp0155l/parcellation_warped.nii.gz
2024-11-13 15:29:54,820 [ INFO] antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp3rotkp9x/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_214b221e-a1d4-11ef-a09a-0242ac120002ftp0155l/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp3rotkp9x/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_214b221e-a1d4-11ef-a09a-0242ac120002ftp0155l/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmp3rotkp9x/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_214b221e-a1d4-11ef-a09a-0242ac120002ftp0155l/parcellation_warped.nii.gz
2024-11-13 15:30:05,739 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
2024-11-13 15:30:05,739 [ INFO] antsApplyTransforms command succeeded with the following output:
2024-11-13 15:30:07,151 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpy7357uaw/test.sqlite (multiple output)>
2024-11-13 15:30:07,151 [ INFO] Storing in <SQLiteFeatureStorage @ /tmp/tmpy7357uaw/test.sqlite (multiple output)>
2024-11-13 15:30:07,335 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2024-11-13 15:30:07,335 [ INFO] Fitting marker Schaefer1000x7_Mean
2024-11-13 15:30:07,335 - JUNIFER - INFO - Computing VBM_GM
2024-11-13 15:30:07,335 [ INFO] Computing VBM_GM
2024-11-13 15:30:07,335 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-11-13 15:30:07,335 [ INFO] Fetching one of Schaefer parcellations.
2024-11-13 15:30:07,335 - JUNIFER - INFO - Parcellation parameters:
2024-11-13 15:30:07,335 [ INFO] Parcellation parameters:
2024-11-13 15:30:07,335 - JUNIFER - INFO - resolution: 2.0
2024-11-13 15:30:07,335 [ INFO] resolution: 2.0
2024-11-13 15:30:07,335 - JUNIFER - INFO - n_rois: 1000
2024-11-13 15:30:07,335 [ INFO] n_rois: 1000
2024-11-13 15:30:07,335 - JUNIFER - INFO - yeo_networks: 7
2024-11-13 15:30:07,335 [ INFO] yeo_networks: 7
2024-11-13 15:30:07,338 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-11-13 15:30:07,338 [ INFO] Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-11-13 15:30:07,395 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-11-13 15:30:07,395 [ INFO] Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-11-13 15:30:08,546 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2
2024-11-13 15:30:08,546 [ INFO] Downloading template MNI152Lin in resolution 2
2024-11-13 15:30:08,628 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp3rotkp9x/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_2987e43a-a1d4-11ef-a09a-0242ac120002vfb7n7ew/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp3rotkp9x/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_2987e43a-a1d4-11ef-a09a-0242ac120002vfb7n7ew/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmp3rotkp9x/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_2987e43a-a1d4-11ef-a09a-0242ac120002vfb7n7ew/parcellation_warped.nii.gz
2024-11-13 15:30:08,628 [ INFO] antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp3rotkp9x/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_2987e43a-a1d4-11ef-a09a-0242ac120002vfb7n7ew/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp3rotkp9x/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_2987e43a-a1d4-11ef-a09a-0242ac120002vfb7n7ew/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmp3rotkp9x/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_2987e43a-a1d4-11ef-a09a-0242ac120002vfb7n7ew/parcellation_warped.nii.gz
2024-11-13 15:30:19,623 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
2024-11-13 15:30:19,623 [ INFO] antsApplyTransforms command succeeded with the following output:
2024-11-13 15:30:20,882 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpy7357uaw/test.sqlite (multiple output)>
2024-11-13 15:30:20,882 [ INFO] Storing in <SQLiteFeatureStorage @ /tmp/tmpy7357uaw/test.sqlite (multiple output)>
2024-11-13 15:30:21,061 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2024-11-13 15:30:21,061 [ INFO] Fitting marker Schaefer1000x7_Std
2024-11-13 15:30:21,061 - JUNIFER - INFO - Computing VBM_GM
2024-11-13 15:30:21,061 [ INFO] Computing VBM_GM
2024-11-13 15:30:21,062 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-11-13 15:30:21,062 [ INFO] Fetching one of Schaefer parcellations.
2024-11-13 15:30:21,062 - JUNIFER - INFO - Parcellation parameters:
2024-11-13 15:30:21,062 [ INFO] Parcellation parameters:
2024-11-13 15:30:21,062 - JUNIFER - INFO - resolution: 2.0
2024-11-13 15:30:21,062 [ INFO] resolution: 2.0
2024-11-13 15:30:21,062 - JUNIFER - INFO - n_rois: 1000
2024-11-13 15:30:21,062 [ INFO] n_rois: 1000
2024-11-13 15:30:21,062 - JUNIFER - INFO - yeo_networks: 7
2024-11-13 15:30:21,062 [ INFO] yeo_networks: 7
2024-11-13 15:30:21,064 - JUNIFER - INFO - Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-11-13 15:30:21,064 [ INFO] Loading parcellation: /github/home/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-11-13 15:30:21,120 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-11-13 15:30:21,120 [ INFO] Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5
2024-11-13 15:30:22,272 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2
2024-11-13 15:30:22,272 [ INFO] Downloading template MNI152Lin in resolution 2
2024-11-13 15:30:22,354 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp3rotkp9x/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_31b64958-a1d4-11ef-a09a-0242ac120002piu_3brk/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp3rotkp9x/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_31b64958-a1d4-11ef-a09a-0242ac120002piu_3brk/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmp3rotkp9x/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_31b64958-a1d4-11ef-a09a-0242ac120002piu_3brk/parcellation_warped.nii.gz
2024-11-13 15:30:22,354 [ INFO] antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/junifer/tmp3rotkp9x/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_31b64958-a1d4-11ef-a09a-0242ac120002piu_3brk/prewarp_parcellation.nii.gz -r /tmp/junifer/tmp3rotkp9x/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_31b64958-a1d4-11ef-a09a-0242ac120002piu_3brk/MNI152Lin_T1w.nii.gz -t /github/home/junifer/data/xfms/.git/annex/objects/80/1W/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5/SHA256E-s151956315--b80fd5f087580ecbbb212d1ece24c12f1ce448ca4912c1ea739eb8e84b6f418a.h5 -o /tmp/junifer/tmp3rotkp9x/ants_parcellation_warper_Schaefer1000x7_from_MNI152NLin6Asym_to_MNI152Lin_31b64958-a1d4-11ef-a09a-0242ac120002piu_3brk/parcellation_warped.nii.gz
2024-11-13 15:30:33,316 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:
2024-11-13 15:30:33,316 [ INFO] antsApplyTransforms command succeeded with the following output:
2024-11-13 15:30:34,642 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpy7357uaw/test.sqlite (multiple output)>
2024-11-13 15:30:34,642 [ INFO] Storing in <SQLiteFeatureStorage @ /tmp/tmpy7357uaw/test.sqlite (multiple output)>
2024-11-13 15:30:34,830 - JUNIFER - INFO - Marker collection fitting done
2024-11-13 15:30:34,830 [ INFO] Marker collection fitting done
import tempfile
import junifer.testing.registry # noqa: F401
from junifer.api import run
datagrabber = {
"kind": "OasisVBMTestingDataGrabber",
}
markers = [
{
"name": "Schaefer1000x7_TrimMean80",
"kind": "ParcelAggregation",
"parcellation": "Schaefer1000x7",
"method": "trim_mean",
"method_params": {"proportiontocut": 0.2},
},
{
"name": "Schaefer1000x7_Mean",
"kind": "ParcelAggregation",
"parcellation": "Schaefer1000x7",
"method": "mean",
},
{
"name": "Schaefer1000x7_Std",
"kind": "ParcelAggregation",
"parcellation": "Schaefer1000x7",
"method": "std",
},
]
storage = {
"kind": "SQLiteFeatureStorage",
}
with tempfile.TemporaryDirectory() as tmpdir:
uri = f"{tmpdir}/test.sqlite"
storage["uri"] = uri
run(
workdir="/tmp",
datagrabber=datagrabber,
markers=markers,
storage=storage,
)
Total running time of the script: (7 minutes 25.919 seconds)