9. API Reference

9.1. Pipeline Elements

Contents:

• 9.1.1. Data Grabbers
  • BaseDataGrabber
  • DMCC13Benchmark
  • DataladAOMICID1000
  • DataladAOMICPIOP1
  • DataladAOMICPIOP2
  • DataladDataGrabber
  • DataladHCP1200
  • HCP1200
  • MultipleDataGrabber
  • PatternDataGrabber
  • PatternDataladDataGrabber
  • PatternValidationMixin
• 9.1.2. DataReaders
  • DefaultDataReader
• 9.1.3. Pre-processing
  • BasePreprocessor
  • Smoothing
  • SpaceWarper
  • fMRIPrepConfoundRemover
• 9.1.4. Markers
  • ALFFParcels
  • ALFFSpheres
  • BaseMarker
  • BrainPrint
  • CrossParcellationFC
  • EdgeCentricFCParcels
  • EdgeCentricFCSpheres
  • FunctionalConnectivityParcels
  • FunctionalConnectivitySpheres
  • ParcelAggregation
  • RSSETSMarker
  • ReHoParcels
  • ReHoSpheres
  • SphereAggregation
  • TemporalSNRParcels
  • TemporalSNRSpheres
  • Complexity
• 9.1.5. Storage
  • BaseFeatureStorage
  • HDF5FeatureStorage
  • PandasBaseFeatureStorage
  • SQLiteFeatureStorage

9.2. Utilities

Contents:

• 9.2.1. Parcellations
  • get_parcellation()
  • list_parcellations()
  • load_parcellation()
  • merge_parcellations()
  • register_parcellation()
• 9.2.2. Coordinates
  • get_coordinates()
  • list_coordinates()
  • load_coordinates()
  • register_coordinates()
• 9.2.3. Masks
  • compute_brain_mask()
  • get_mask()
  • list_masks()
  • load_mask()
  • register_mask()
• 9.2.4. Template Spaces
  • get_template()
  • get_xfm()
• 9.2.5. Stats
  • count()
  • get_aggfunc_by_name()
  • select()
  • winsorized_mean()
• 9.2.6. Pipeline
  • MarkerCollection
  • PipelineStepMixin
  • UpdateMetaMixin
  • WorkDirManager()
• 9.2.7. Registry
  • build()
  • get_class()
  • get_step_names()
  • register()
• 9.2.8. API Functions
  • Main Functions
  • Decorators
  • Queue Context
• 9.2.9. CLI Functions
  • parse_elements()
  • parse_yaml()
• 9.2.10. Utils
  • configure_logging()
  • deep_update()
  • make_executable()
  • raise_error()
  • run_ext_cmd()
  • warn_with_log()
• 9.2.11. Testing
  • OasisVBMTestingDataGrabber
  • PartlyCloudyTestingDataGrabber
  • SPMAuditoryTestingDataGrabber
• 9.2.12. On-the-fly
  • read_transform()
  • normalize()
  • reweight()

9.3. Configs

Contents:

• 9.3.1. Configs
  • Juseless
    • JuselessDataladAOMICID1000VBM
    • JuselessDataladCamCANVBM
    • JuselessDataladIXIVBM
    • JuselessDataladUKBVBM
    • JuselessUCLA

9.4. External

Contents:

• 9.4.1. Nilearn
  • JuniferConnectivityMeasure
  • JuniferNiftiSpheresMasker