8.3. UKB VBM GMD Extraction

Authors: Federico Raimondo

License: BSD 3 clause

2024-09-30 11:25:26,964 - JUNIFER - INFO - Registering OasisVBMTestingDataGrabber in datagrabber
2024-09-30 11:25:26,964 - JUNIFER - INFO - Registering SPMAuditoryTestingDataGrabber in datagrabber
2024-09-30 11:25:26,964 - JUNIFER - INFO - Registering PartlyCloudyTestingDataGrabber in datagrabber
2024-09-30 11:25:26,970 - JUNIFER - INFO - Registering ParcelAggregation in marker
2024-09-30 11:25:26,976 - JUNIFER - INFO - Registering SQLiteFeatureStorage in storage
2024-09-30 11:25:26,976 - JUNIFER - INFO - Validating Marker Collection
2024-09-30 11:25:26,976 - JUNIFER - INFO - DataGrabber output type: ['VBM_GM']
2024-09-30 11:25:26,977 - JUNIFER - INFO - Validating Data Reader:
2024-09-30 11:25:26,977 - JUNIFER - INFO - Data Reader output type: ['VBM_GM']
2024-09-30 11:25:26,977 - JUNIFER - INFO - Validating Marker: Schaefer1000x7_TrimMean80
2024-09-30 11:25:26,977 - JUNIFER - INFO - Marker output type: ['vector']
2024-09-30 11:25:26,977 - JUNIFER - INFO - Validating storage for Schaefer1000x7_TrimMean80
2024-09-30 11:25:26,977 - JUNIFER - INFO - Validating Marker: Schaefer1000x7_Mean
2024-09-30 11:25:26,977 - JUNIFER - INFO - Marker output type: ['vector']
2024-09-30 11:25:26,977 - JUNIFER - INFO - Validating storage for Schaefer1000x7_Mean
2024-09-30 11:25:26,977 - JUNIFER - INFO - Validating Marker: Schaefer1000x7_Std
2024-09-30 11:25:26,977 - JUNIFER - INFO - Marker output type: ['vector']
2024-09-30 11:25:26,977 - JUNIFER - INFO - Validating storage for Schaefer1000x7_Std

Added README.md to /home/runner/nilearn_data


Dataset created in /home/runner/nilearn_data/oasis1

Downloading data from https://www.nitrc.org/frs/download.php/6364/archive_dartel.tgz ...

Downloaded 203448320 of 905208634 bytes (22.5%,    3.4s remaining)
Downloaded 437248000 of 905208634 bytes (48.3%,    2.1s remaining)
Downloaded 673079296 of 905208634 bytes (74.4%,    1.0s remaining) ...done. (4 seconds, 0 min)
Extracting data from /home/runner/nilearn_data/oasis1/7088b0bf88f5650db26e32ec3afdd589/archive_dartel.tgz..... done.
2024-09-30 11:25:37,189 - JUNIFER - INFO - Getting element sub-01
2024-09-30 11:25:37,189 - JUNIFER - INFO - Fitting pipeline
2024-09-30 11:25:37,189 - JUNIFER - INFO - Reading VBM_GM from /home/runner/nilearn_data/oasis1/OAS1_0001_MR1/mwrc1OAS1_0001_MR1_mpr_anon_fslswapdim_bet.nii.gz
2024-09-30 11:25:37,189 - JUNIFER - INFO - VBM_GM is of type NIFTI
2024-09-30 11:25:37,190 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2024-09-30 11:25:37,191 - JUNIFER - INFO - Computing VBM_GM
2024-09-30 11:25:37,191 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-09-30 11:25:37,191 - JUNIFER - INFO - Parcellation parameters:
2024-09-30 11:25:37,192 - JUNIFER - INFO -      resolution: 2.0
2024-09-30 11:25:37,192 - JUNIFER - INFO -      n_rois: 1000
2024-09-30 11:25:37,192 - JUNIFER - INFO -      yeo_networks: 7
2024-09-30 11:25:37,192 - JUNIFER - INFO - At least one of the parcellation files are missing. Fetching using nilearn.

Added README.md to /home/runner/junifer/data/parcellations


Dataset created in /home/runner/junifer/data/parcellations/schaefer_2018

Downloading data from https://raw.githubusercontent.com/ThomasYeoLab/CBIG/v0.14.3-Update_Yeo2011_Schaefer2018_labelname/stable_projects/brain_parcellation/Schaefer2018_LocalGlobal/Parcellations/MNI/Schaefer2018_1000Parcels_7Networks_order.txt ...
 ...done. (0 seconds, 0 min)
Downloading data from https://raw.githubusercontent.com/ThomasYeoLab/CBIG/v0.14.3-Update_Yeo2011_Schaefer2018_labelname/stable_projects/brain_parcellation/Schaefer2018_LocalGlobal/Parcellations/MNI/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz ...
 ...done. (0 seconds, 0 min)
2024-09-30 11:25:37,385 - JUNIFER - INFO - Loading parcellation /home/runner/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-09-30 11:25:37,421 - JUNIFER - INFO - Downloading xfm file for MNI152NLin6Asym to MNI152Lin from https://gin.g-node.org/juaml/human-template-xfms/raw/main/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5
2024-09-30 11:42:05,371 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2
Downloading https://templateflow.s3.amazonaws.com/tpl-MNI152Lin/tpl-MNI152Lin_res-02_T1w.nii.gz

  0%|          | 0.00/1.45M [00:00<?, ?B/s]
100%|██████████| 1.45M/1.45M [00:00<00:00, 35.7MB/s]
2024-09-30 11:42:05,650 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/tmpn9vwo4yf/parcellationsk47j9gm5/Schaefer1000x7.nii.gz -r /tmp/tmpn9vwo4yf/parcellationsk47j9gm5/MNI152Lin_T1w_2.0.nii.gz -t /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 -o /tmp/tmp390h9779/parcellationsg05n17zy/Schaefer1000x7_warped_from_MNI152NLin6Asym_to_MNI152Lin.nii.gz
2024-09-30 11:42:13,374 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2024-09-30 11:42:14,498 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpavh_ud43/test.sqlite (multiple output)>
2024-09-30 11:42:14,650 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2024-09-30 11:42:14,650 - JUNIFER - INFO - Computing VBM_GM
2024-09-30 11:42:14,651 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-09-30 11:42:14,651 - JUNIFER - INFO - Parcellation parameters:
2024-09-30 11:42:14,651 - JUNIFER - INFO -      resolution: 2.0
2024-09-30 11:42:14,651 - JUNIFER - INFO -      n_rois: 1000
2024-09-30 11:42:14,651 - JUNIFER - INFO -      yeo_networks: 7
2024-09-30 11:42:14,653 - JUNIFER - INFO - Loading parcellation /home/runner/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-09-30 11:42:14,686 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5
2024-09-30 11:42:15,652 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2
2024-09-30 11:42:15,751 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/tmpn9vwo4yf/parcellations6h7nt__a/Schaefer1000x7.nii.gz -r /tmp/tmpn9vwo4yf/parcellations6h7nt__a/MNI152Lin_T1w_2.0.nii.gz -t /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 -o /tmp/tmp390h9779/parcellationse31eddgj/Schaefer1000x7_warped_from_MNI152NLin6Asym_to_MNI152Lin.nii.gz
2024-09-30 11:42:23,160 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2024-09-30 11:42:24,253 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpavh_ud43/test.sqlite (multiple output)>
2024-09-30 11:42:24,413 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2024-09-30 11:42:24,414 - JUNIFER - INFO - Computing VBM_GM
2024-09-30 11:42:24,414 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-09-30 11:42:24,414 - JUNIFER - INFO - Parcellation parameters:
2024-09-30 11:42:24,414 - JUNIFER - INFO -      resolution: 2.0
2024-09-30 11:42:24,414 - JUNIFER - INFO -      n_rois: 1000
2024-09-30 11:42:24,414 - JUNIFER - INFO -      yeo_networks: 7
2024-09-30 11:42:24,416 - JUNIFER - INFO - Loading parcellation /home/runner/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-09-30 11:42:24,450 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5
2024-09-30 11:42:25,418 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2
2024-09-30 11:42:25,517 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/tmpn9vwo4yf/parcellationsk1567cxp/Schaefer1000x7.nii.gz -r /tmp/tmpn9vwo4yf/parcellationsk1567cxp/MNI152Lin_T1w_2.0.nii.gz -t /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 -o /tmp/tmp390h9779/parcellationser10t4y6/Schaefer1000x7_warped_from_MNI152NLin6Asym_to_MNI152Lin.nii.gz
2024-09-30 11:42:32,787 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2024-09-30 11:42:33,908 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpavh_ud43/test.sqlite (multiple output)>
2024-09-30 11:42:34,066 - JUNIFER - INFO - Marker collection fitting done
2024-09-30 11:42:34,067 - JUNIFER - INFO - Getting element sub-02
2024-09-30 11:42:34,067 - JUNIFER - INFO - Fitting pipeline
2024-09-30 11:42:34,067 - JUNIFER - INFO - Reading VBM_GM from /home/runner/nilearn_data/oasis1/OAS1_0002_MR1/mwrc1OAS1_0002_MR1_mpr_anon_fslswapdim_bet.nii.gz
2024-09-30 11:42:34,067 - JUNIFER - INFO - VBM_GM is of type NIFTI
2024-09-30 11:42:34,068 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2024-09-30 11:42:34,068 - JUNIFER - INFO - Computing VBM_GM
2024-09-30 11:42:34,068 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-09-30 11:42:34,069 - JUNIFER - INFO - Parcellation parameters:
2024-09-30 11:42:34,069 - JUNIFER - INFO -      resolution: 2.0
2024-09-30 11:42:34,069 - JUNIFER - INFO -      n_rois: 1000
2024-09-30 11:42:34,069 - JUNIFER - INFO -      yeo_networks: 7
2024-09-30 11:42:34,071 - JUNIFER - INFO - Loading parcellation /home/runner/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-09-30 11:42:34,104 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5
2024-09-30 11:42:35,075 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2
2024-09-30 11:42:35,174 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/tmpn9vwo4yf/parcellations3ejz0ai6/Schaefer1000x7.nii.gz -r /tmp/tmpn9vwo4yf/parcellations3ejz0ai6/MNI152Lin_T1w_2.0.nii.gz -t /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 -o /tmp/tmp83grlvbv/parcellationsmz64krgi/Schaefer1000x7_warped_from_MNI152NLin6Asym_to_MNI152Lin.nii.gz
2024-09-30 11:42:42,637 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2024-09-30 11:42:43,756 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpavh_ud43/test.sqlite (multiple output)>
2024-09-30 11:42:43,907 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2024-09-30 11:42:43,907 - JUNIFER - INFO - Computing VBM_GM
2024-09-30 11:42:43,908 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-09-30 11:42:43,908 - JUNIFER - INFO - Parcellation parameters:
2024-09-30 11:42:43,908 - JUNIFER - INFO -      resolution: 2.0
2024-09-30 11:42:43,908 - JUNIFER - INFO -      n_rois: 1000
2024-09-30 11:42:43,908 - JUNIFER - INFO -      yeo_networks: 7
2024-09-30 11:42:43,910 - JUNIFER - INFO - Loading parcellation /home/runner/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-09-30 11:42:43,943 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5
2024-09-30 11:42:44,917 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2
2024-09-30 11:42:45,016 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/tmpn9vwo4yf/parcellationssmvcgb1l/Schaefer1000x7.nii.gz -r /tmp/tmpn9vwo4yf/parcellationssmvcgb1l/MNI152Lin_T1w_2.0.nii.gz -t /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 -o /tmp/tmp83grlvbv/parcellationsoj1wfjq6/Schaefer1000x7_warped_from_MNI152NLin6Asym_to_MNI152Lin.nii.gz
2024-09-30 11:42:52,432 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2024-09-30 11:42:53,533 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpavh_ud43/test.sqlite (multiple output)>
2024-09-30 11:42:53,689 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2024-09-30 11:42:53,689 - JUNIFER - INFO - Computing VBM_GM
2024-09-30 11:42:53,690 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-09-30 11:42:53,690 - JUNIFER - INFO - Parcellation parameters:
2024-09-30 11:42:53,690 - JUNIFER - INFO -      resolution: 2.0
2024-09-30 11:42:53,690 - JUNIFER - INFO -      n_rois: 1000
2024-09-30 11:42:53,690 - JUNIFER - INFO -      yeo_networks: 7
2024-09-30 11:42:53,692 - JUNIFER - INFO - Loading parcellation /home/runner/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-09-30 11:42:53,725 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5
2024-09-30 11:42:54,692 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2
2024-09-30 11:42:54,791 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/tmpn9vwo4yf/parcellationsxu3nzw1d/Schaefer1000x7.nii.gz -r /tmp/tmpn9vwo4yf/parcellationsxu3nzw1d/MNI152Lin_T1w_2.0.nii.gz -t /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 -o /tmp/tmp83grlvbv/parcellationsdpucod5_/Schaefer1000x7_warped_from_MNI152NLin6Asym_to_MNI152Lin.nii.gz
2024-09-30 11:43:02,125 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2024-09-30 11:43:03,238 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpavh_ud43/test.sqlite (multiple output)>
2024-09-30 11:43:03,398 - JUNIFER - INFO - Marker collection fitting done
2024-09-30 11:43:03,399 - JUNIFER - INFO - Getting element sub-03
2024-09-30 11:43:03,399 - JUNIFER - INFO - Fitting pipeline
2024-09-30 11:43:03,399 - JUNIFER - INFO - Reading VBM_GM from /home/runner/nilearn_data/oasis1/OAS1_0003_MR1/mwrc1OAS1_0003_MR1_mpr_anon_fslswapdim_bet.nii.gz
2024-09-30 11:43:03,399 - JUNIFER - INFO - VBM_GM is of type NIFTI
2024-09-30 11:43:03,400 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2024-09-30 11:43:03,400 - JUNIFER - INFO - Computing VBM_GM
2024-09-30 11:43:03,401 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-09-30 11:43:03,401 - JUNIFER - INFO - Parcellation parameters:
2024-09-30 11:43:03,401 - JUNIFER - INFO -      resolution: 2.0
2024-09-30 11:43:03,401 - JUNIFER - INFO -      n_rois: 1000
2024-09-30 11:43:03,401 - JUNIFER - INFO -      yeo_networks: 7
2024-09-30 11:43:03,403 - JUNIFER - INFO - Loading parcellation /home/runner/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-09-30 11:43:03,435 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5
2024-09-30 11:43:04,409 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2
2024-09-30 11:43:04,509 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/tmpn9vwo4yf/parcellationsxomos4tq/Schaefer1000x7.nii.gz -r /tmp/tmpn9vwo4yf/parcellationsxomos4tq/MNI152Lin_T1w_2.0.nii.gz -t /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 -o /tmp/tmp3fhnzjbz/parcellations9uceh83y/Schaefer1000x7_warped_from_MNI152NLin6Asym_to_MNI152Lin.nii.gz
2024-09-30 11:43:11,943 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2024-09-30 11:43:13,059 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpavh_ud43/test.sqlite (multiple output)>
2024-09-30 11:43:13,211 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2024-09-30 11:43:13,211 - JUNIFER - INFO - Computing VBM_GM
2024-09-30 11:43:13,211 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-09-30 11:43:13,211 - JUNIFER - INFO - Parcellation parameters:
2024-09-30 11:43:13,211 - JUNIFER - INFO -      resolution: 2.0
2024-09-30 11:43:13,211 - JUNIFER - INFO -      n_rois: 1000
2024-09-30 11:43:13,212 - JUNIFER - INFO -      yeo_networks: 7
2024-09-30 11:43:13,213 - JUNIFER - INFO - Loading parcellation /home/runner/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-09-30 11:43:13,246 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5
2024-09-30 11:43:14,215 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2
2024-09-30 11:43:14,315 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/tmpn9vwo4yf/parcellationswbzanwek/Schaefer1000x7.nii.gz -r /tmp/tmpn9vwo4yf/parcellationswbzanwek/MNI152Lin_T1w_2.0.nii.gz -t /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 -o /tmp/tmp3fhnzjbz/parcellationswqqd6omk/Schaefer1000x7_warped_from_MNI152NLin6Asym_to_MNI152Lin.nii.gz
2024-09-30 11:43:21,794 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2024-09-30 11:43:22,896 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpavh_ud43/test.sqlite (multiple output)>
2024-09-30 11:43:23,051 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2024-09-30 11:43:23,051 - JUNIFER - INFO - Computing VBM_GM
2024-09-30 11:43:23,052 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-09-30 11:43:23,052 - JUNIFER - INFO - Parcellation parameters:
2024-09-30 11:43:23,052 - JUNIFER - INFO -      resolution: 2.0
2024-09-30 11:43:23,052 - JUNIFER - INFO -      n_rois: 1000
2024-09-30 11:43:23,052 - JUNIFER - INFO -      yeo_networks: 7
2024-09-30 11:43:23,054 - JUNIFER - INFO - Loading parcellation /home/runner/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-09-30 11:43:23,087 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5
2024-09-30 11:43:24,051 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2
2024-09-30 11:43:24,150 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/tmpn9vwo4yf/parcellations5q_zdhc9/Schaefer1000x7.nii.gz -r /tmp/tmpn9vwo4yf/parcellations5q_zdhc9/MNI152Lin_T1w_2.0.nii.gz -t /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 -o /tmp/tmp3fhnzjbz/parcellationsaa_vhzbc/Schaefer1000x7_warped_from_MNI152NLin6Asym_to_MNI152Lin.nii.gz
2024-09-30 11:43:31,641 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2024-09-30 11:43:32,761 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpavh_ud43/test.sqlite (multiple output)>
2024-09-30 11:43:32,920 - JUNIFER - INFO - Marker collection fitting done
2024-09-30 11:43:32,920 - JUNIFER - INFO - Getting element sub-04
2024-09-30 11:43:32,920 - JUNIFER - INFO - Fitting pipeline
2024-09-30 11:43:32,920 - JUNIFER - INFO - Reading VBM_GM from /home/runner/nilearn_data/oasis1/OAS1_0004_MR1/mwrc1OAS1_0004_MR1_mpr_anon_fslswapdim_bet.nii.gz
2024-09-30 11:43:32,920 - JUNIFER - INFO - VBM_GM is of type NIFTI
2024-09-30 11:43:32,921 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2024-09-30 11:43:32,921 - JUNIFER - INFO - Computing VBM_GM
2024-09-30 11:43:32,922 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-09-30 11:43:32,922 - JUNIFER - INFO - Parcellation parameters:
2024-09-30 11:43:32,922 - JUNIFER - INFO -      resolution: 2.0
2024-09-30 11:43:32,922 - JUNIFER - INFO -      n_rois: 1000
2024-09-30 11:43:32,922 - JUNIFER - INFO -      yeo_networks: 7
2024-09-30 11:43:32,924 - JUNIFER - INFO - Loading parcellation /home/runner/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-09-30 11:43:32,956 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5
2024-09-30 11:43:33,923 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2
2024-09-30 11:43:34,023 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/tmpn9vwo4yf/parcellationsptc_n3xi/Schaefer1000x7.nii.gz -r /tmp/tmpn9vwo4yf/parcellationsptc_n3xi/MNI152Lin_T1w_2.0.nii.gz -t /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 -o /tmp/tmpf9jkhe90/parcellations0s2qy743/Schaefer1000x7_warped_from_MNI152NLin6Asym_to_MNI152Lin.nii.gz
2024-09-30 11:43:41,414 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2024-09-30 11:43:42,528 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpavh_ud43/test.sqlite (multiple output)>
2024-09-30 11:43:42,681 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2024-09-30 11:43:42,681 - JUNIFER - INFO - Computing VBM_GM
2024-09-30 11:43:42,681 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-09-30 11:43:42,681 - JUNIFER - INFO - Parcellation parameters:
2024-09-30 11:43:42,681 - JUNIFER - INFO -      resolution: 2.0
2024-09-30 11:43:42,681 - JUNIFER - INFO -      n_rois: 1000
2024-09-30 11:43:42,682 - JUNIFER - INFO -      yeo_networks: 7
2024-09-30 11:43:42,683 - JUNIFER - INFO - Loading parcellation /home/runner/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-09-30 11:43:42,716 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5
2024-09-30 11:43:43,688 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2
2024-09-30 11:43:43,787 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/tmpn9vwo4yf/parcellationsl1sdz8po/Schaefer1000x7.nii.gz -r /tmp/tmpn9vwo4yf/parcellationsl1sdz8po/MNI152Lin_T1w_2.0.nii.gz -t /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 -o /tmp/tmpf9jkhe90/parcellationslbp0x5n1/Schaefer1000x7_warped_from_MNI152NLin6Asym_to_MNI152Lin.nii.gz
2024-09-30 11:43:51,239 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2024-09-30 11:43:52,326 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpavh_ud43/test.sqlite (multiple output)>
2024-09-30 11:43:52,481 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2024-09-30 11:43:52,481 - JUNIFER - INFO - Computing VBM_GM
2024-09-30 11:43:52,482 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-09-30 11:43:52,482 - JUNIFER - INFO - Parcellation parameters:
2024-09-30 11:43:52,482 - JUNIFER - INFO -      resolution: 2.0
2024-09-30 11:43:52,482 - JUNIFER - INFO -      n_rois: 1000
2024-09-30 11:43:52,482 - JUNIFER - INFO -      yeo_networks: 7
2024-09-30 11:43:52,484 - JUNIFER - INFO - Loading parcellation /home/runner/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-09-30 11:43:52,517 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5
2024-09-30 11:43:53,485 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2
2024-09-30 11:43:53,584 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/tmpn9vwo4yf/parcellationsbho_j0xh/Schaefer1000x7.nii.gz -r /tmp/tmpn9vwo4yf/parcellationsbho_j0xh/MNI152Lin_T1w_2.0.nii.gz -t /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 -o /tmp/tmpf9jkhe90/parcellations6_ek5dx1/Schaefer1000x7_warped_from_MNI152NLin6Asym_to_MNI152Lin.nii.gz
2024-09-30 11:44:00,976 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2024-09-30 11:44:02,074 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpavh_ud43/test.sqlite (multiple output)>
2024-09-30 11:44:02,234 - JUNIFER - INFO - Marker collection fitting done
2024-09-30 11:44:02,234 - JUNIFER - INFO - Getting element sub-05
2024-09-30 11:44:02,234 - JUNIFER - INFO - Fitting pipeline
2024-09-30 11:44:02,235 - JUNIFER - INFO - Reading VBM_GM from /home/runner/nilearn_data/oasis1/OAS1_0005_MR1/mwrc1OAS1_0005_MR1_mpr_anon_fslswapdim_bet.nii.gz
2024-09-30 11:44:02,235 - JUNIFER - INFO - VBM_GM is of type NIFTI
2024-09-30 11:44:02,236 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2024-09-30 11:44:02,236 - JUNIFER - INFO - Computing VBM_GM
2024-09-30 11:44:02,236 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-09-30 11:44:02,236 - JUNIFER - INFO - Parcellation parameters:
2024-09-30 11:44:02,236 - JUNIFER - INFO -      resolution: 2.0
2024-09-30 11:44:02,237 - JUNIFER - INFO -      n_rois: 1000
2024-09-30 11:44:02,237 - JUNIFER - INFO -      yeo_networks: 7
2024-09-30 11:44:02,239 - JUNIFER - INFO - Loading parcellation /home/runner/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-09-30 11:44:02,270 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5
2024-09-30 11:44:03,236 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2
2024-09-30 11:44:03,335 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/tmpn9vwo4yf/parcellations2ekoqa_f/Schaefer1000x7.nii.gz -r /tmp/tmpn9vwo4yf/parcellations2ekoqa_f/MNI152Lin_T1w_2.0.nii.gz -t /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 -o /tmp/tmp6n3d14ry/parcellationsd6aq7byn/Schaefer1000x7_warped_from_MNI152NLin6Asym_to_MNI152Lin.nii.gz
2024-09-30 11:44:10,755 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2024-09-30 11:44:11,878 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpavh_ud43/test.sqlite (multiple output)>
2024-09-30 11:44:12,031 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2024-09-30 11:44:12,031 - JUNIFER - INFO - Computing VBM_GM
2024-09-30 11:44:12,031 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-09-30 11:44:12,031 - JUNIFER - INFO - Parcellation parameters:
2024-09-30 11:44:12,031 - JUNIFER - INFO -      resolution: 2.0
2024-09-30 11:44:12,032 - JUNIFER - INFO -      n_rois: 1000
2024-09-30 11:44:12,032 - JUNIFER - INFO -      yeo_networks: 7
2024-09-30 11:44:12,034 - JUNIFER - INFO - Loading parcellation /home/runner/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-09-30 11:44:12,066 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5
2024-09-30 11:44:13,040 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2
2024-09-30 11:44:13,139 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/tmpn9vwo4yf/parcellationsa095rwos/Schaefer1000x7.nii.gz -r /tmp/tmpn9vwo4yf/parcellationsa095rwos/MNI152Lin_T1w_2.0.nii.gz -t /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 -o /tmp/tmp6n3d14ry/parcellationsldvpav7i/Schaefer1000x7_warped_from_MNI152NLin6Asym_to_MNI152Lin.nii.gz
2024-09-30 11:44:20,615 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2024-09-30 11:44:21,711 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpavh_ud43/test.sqlite (multiple output)>
2024-09-30 11:44:21,867 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2024-09-30 11:44:21,867 - JUNIFER - INFO - Computing VBM_GM
2024-09-30 11:44:21,867 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-09-30 11:44:21,867 - JUNIFER - INFO - Parcellation parameters:
2024-09-30 11:44:21,867 - JUNIFER - INFO -      resolution: 2.0
2024-09-30 11:44:21,867 - JUNIFER - INFO -      n_rois: 1000
2024-09-30 11:44:21,867 - JUNIFER - INFO -      yeo_networks: 7
2024-09-30 11:44:21,869 - JUNIFER - INFO - Loading parcellation /home/runner/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-09-30 11:44:21,902 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5
2024-09-30 11:44:22,870 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2
2024-09-30 11:44:22,969 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/tmpn9vwo4yf/parcellations6kgculzj/Schaefer1000x7.nii.gz -r /tmp/tmpn9vwo4yf/parcellations6kgculzj/MNI152Lin_T1w_2.0.nii.gz -t /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 -o /tmp/tmp6n3d14ry/parcellationsi6dm91t3/Schaefer1000x7_warped_from_MNI152NLin6Asym_to_MNI152Lin.nii.gz
2024-09-30 11:44:30,342 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2024-09-30 11:44:31,454 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpavh_ud43/test.sqlite (multiple output)>
2024-09-30 11:44:31,612 - JUNIFER - INFO - Marker collection fitting done
2024-09-30 11:44:31,613 - JUNIFER - INFO - Getting element sub-06
2024-09-30 11:44:31,613 - JUNIFER - INFO - Fitting pipeline
2024-09-30 11:44:31,613 - JUNIFER - INFO - Reading VBM_GM from /home/runner/nilearn_data/oasis1/OAS1_0006_MR1/mwrc1OAS1_0006_MR1_mpr_anon_fslswapdim_bet.nii.gz
2024-09-30 11:44:31,613 - JUNIFER - INFO - VBM_GM is of type NIFTI
2024-09-30 11:44:31,614 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2024-09-30 11:44:31,614 - JUNIFER - INFO - Computing VBM_GM
2024-09-30 11:44:31,615 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-09-30 11:44:31,615 - JUNIFER - INFO - Parcellation parameters:
2024-09-30 11:44:31,615 - JUNIFER - INFO -      resolution: 2.0
2024-09-30 11:44:31,615 - JUNIFER - INFO -      n_rois: 1000
2024-09-30 11:44:31,615 - JUNIFER - INFO -      yeo_networks: 7
2024-09-30 11:44:31,617 - JUNIFER - INFO - Loading parcellation /home/runner/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-09-30 11:44:31,652 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5
2024-09-30 11:44:32,624 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2
2024-09-30 11:44:32,723 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/tmpn9vwo4yf/parcellationssezxatdi/Schaefer1000x7.nii.gz -r /tmp/tmpn9vwo4yf/parcellationssezxatdi/MNI152Lin_T1w_2.0.nii.gz -t /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 -o /tmp/tmple7o204t/parcellationsd1q4d9ui/Schaefer1000x7_warped_from_MNI152NLin6Asym_to_MNI152Lin.nii.gz
2024-09-30 11:44:40,194 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2024-09-30 11:44:41,322 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpavh_ud43/test.sqlite (multiple output)>
2024-09-30 11:44:41,473 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2024-09-30 11:44:41,473 - JUNIFER - INFO - Computing VBM_GM
2024-09-30 11:44:41,473 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-09-30 11:44:41,473 - JUNIFER - INFO - Parcellation parameters:
2024-09-30 11:44:41,474 - JUNIFER - INFO -      resolution: 2.0
2024-09-30 11:44:41,474 - JUNIFER - INFO -      n_rois: 1000
2024-09-30 11:44:41,474 - JUNIFER - INFO -      yeo_networks: 7
2024-09-30 11:44:41,476 - JUNIFER - INFO - Loading parcellation /home/runner/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-09-30 11:44:41,509 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5
2024-09-30 11:44:42,481 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2
2024-09-30 11:44:42,580 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/tmpn9vwo4yf/parcellationsvuxinqvd/Schaefer1000x7.nii.gz -r /tmp/tmpn9vwo4yf/parcellationsvuxinqvd/MNI152Lin_T1w_2.0.nii.gz -t /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 -o /tmp/tmple7o204t/parcellationst207e7rj/Schaefer1000x7_warped_from_MNI152NLin6Asym_to_MNI152Lin.nii.gz
2024-09-30 11:44:50,001 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2024-09-30 11:44:51,103 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpavh_ud43/test.sqlite (multiple output)>
2024-09-30 11:44:51,259 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2024-09-30 11:44:51,259 - JUNIFER - INFO - Computing VBM_GM
2024-09-30 11:44:51,260 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-09-30 11:44:51,260 - JUNIFER - INFO - Parcellation parameters:
2024-09-30 11:44:51,260 - JUNIFER - INFO -      resolution: 2.0
2024-09-30 11:44:51,260 - JUNIFER - INFO -      n_rois: 1000
2024-09-30 11:44:51,260 - JUNIFER - INFO -      yeo_networks: 7
2024-09-30 11:44:51,262 - JUNIFER - INFO - Loading parcellation /home/runner/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-09-30 11:44:51,295 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5
2024-09-30 11:44:52,264 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2
2024-09-30 11:44:52,363 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/tmpn9vwo4yf/parcellationsptkfsxeg/Schaefer1000x7.nii.gz -r /tmp/tmpn9vwo4yf/parcellationsptkfsxeg/MNI152Lin_T1w_2.0.nii.gz -t /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 -o /tmp/tmple7o204t/parcellationsz_6uhb6s/Schaefer1000x7_warped_from_MNI152NLin6Asym_to_MNI152Lin.nii.gz
2024-09-30 11:44:59,784 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2024-09-30 11:45:00,897 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpavh_ud43/test.sqlite (multiple output)>
2024-09-30 11:45:01,055 - JUNIFER - INFO - Marker collection fitting done
2024-09-30 11:45:01,055 - JUNIFER - INFO - Getting element sub-07
2024-09-30 11:45:01,055 - JUNIFER - INFO - Fitting pipeline
2024-09-30 11:45:01,056 - JUNIFER - INFO - Reading VBM_GM from /home/runner/nilearn_data/oasis1/OAS1_0007_MR1/mwrc1OAS1_0007_MR1_mpr_anon_fslswapdim_bet.nii.gz
2024-09-30 11:45:01,056 - JUNIFER - INFO - VBM_GM is of type NIFTI
2024-09-30 11:45:01,057 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2024-09-30 11:45:01,057 - JUNIFER - INFO - Computing VBM_GM
2024-09-30 11:45:01,057 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-09-30 11:45:01,057 - JUNIFER - INFO - Parcellation parameters:
2024-09-30 11:45:01,057 - JUNIFER - INFO -      resolution: 2.0
2024-09-30 11:45:01,057 - JUNIFER - INFO -      n_rois: 1000
2024-09-30 11:45:01,057 - JUNIFER - INFO -      yeo_networks: 7
2024-09-30 11:45:01,059 - JUNIFER - INFO - Loading parcellation /home/runner/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-09-30 11:45:01,091 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5
2024-09-30 11:45:02,067 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2
2024-09-30 11:45:02,166 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/tmpn9vwo4yf/parcellationsksm86rn6/Schaefer1000x7.nii.gz -r /tmp/tmpn9vwo4yf/parcellationsksm86rn6/MNI152Lin_T1w_2.0.nii.gz -t /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 -o /tmp/tmpfsa24tqi/parcellationsoty6uoiu/Schaefer1000x7_warped_from_MNI152NLin6Asym_to_MNI152Lin.nii.gz
2024-09-30 11:45:09,479 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2024-09-30 11:45:10,599 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpavh_ud43/test.sqlite (multiple output)>
2024-09-30 11:45:10,751 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2024-09-30 11:45:10,751 - JUNIFER - INFO - Computing VBM_GM
2024-09-30 11:45:10,752 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-09-30 11:45:10,752 - JUNIFER - INFO - Parcellation parameters:
2024-09-30 11:45:10,752 - JUNIFER - INFO -      resolution: 2.0
2024-09-30 11:45:10,752 - JUNIFER - INFO -      n_rois: 1000
2024-09-30 11:45:10,752 - JUNIFER - INFO -      yeo_networks: 7
2024-09-30 11:45:10,754 - JUNIFER - INFO - Loading parcellation /home/runner/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-09-30 11:45:10,787 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5
2024-09-30 11:45:11,757 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2
2024-09-30 11:45:11,856 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/tmpn9vwo4yf/parcellations49qmz3o0/Schaefer1000x7.nii.gz -r /tmp/tmpn9vwo4yf/parcellations49qmz3o0/MNI152Lin_T1w_2.0.nii.gz -t /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 -o /tmp/tmpfsa24tqi/parcellationse56tiqc9/Schaefer1000x7_warped_from_MNI152NLin6Asym_to_MNI152Lin.nii.gz
2024-09-30 11:45:19,186 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2024-09-30 11:45:20,295 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpavh_ud43/test.sqlite (multiple output)>
2024-09-30 11:45:20,451 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2024-09-30 11:45:20,451 - JUNIFER - INFO - Computing VBM_GM
2024-09-30 11:45:20,452 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-09-30 11:45:20,452 - JUNIFER - INFO - Parcellation parameters:
2024-09-30 11:45:20,452 - JUNIFER - INFO -      resolution: 2.0
2024-09-30 11:45:20,452 - JUNIFER - INFO -      n_rois: 1000
2024-09-30 11:45:20,452 - JUNIFER - INFO -      yeo_networks: 7
2024-09-30 11:45:20,454 - JUNIFER - INFO - Loading parcellation /home/runner/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-09-30 11:45:20,487 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5
2024-09-30 11:45:21,456 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2
2024-09-30 11:45:21,554 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/tmpn9vwo4yf/parcellationssimsxw_k/Schaefer1000x7.nii.gz -r /tmp/tmpn9vwo4yf/parcellationssimsxw_k/MNI152Lin_T1w_2.0.nii.gz -t /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 -o /tmp/tmpfsa24tqi/parcellationsucttg_b9/Schaefer1000x7_warped_from_MNI152NLin6Asym_to_MNI152Lin.nii.gz
2024-09-30 11:45:29,022 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2024-09-30 11:45:30,136 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpavh_ud43/test.sqlite (multiple output)>
2024-09-30 11:45:30,294 - JUNIFER - INFO - Marker collection fitting done
2024-09-30 11:45:30,295 - JUNIFER - INFO - Getting element sub-08
2024-09-30 11:45:30,295 - JUNIFER - INFO - Fitting pipeline
2024-09-30 11:45:30,295 - JUNIFER - INFO - Reading VBM_GM from /home/runner/nilearn_data/oasis1/OAS1_0009_MR1/mwrc1OAS1_0009_MR1_mpr_anon_fslswapdim_bet.nii.gz
2024-09-30 11:45:30,295 - JUNIFER - INFO - VBM_GM is of type NIFTI
2024-09-30 11:45:30,296 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2024-09-30 11:45:30,296 - JUNIFER - INFO - Computing VBM_GM
2024-09-30 11:45:30,297 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-09-30 11:45:30,297 - JUNIFER - INFO - Parcellation parameters:
2024-09-30 11:45:30,297 - JUNIFER - INFO -      resolution: 2.0
2024-09-30 11:45:30,297 - JUNIFER - INFO -      n_rois: 1000
2024-09-30 11:45:30,297 - JUNIFER - INFO -      yeo_networks: 7
2024-09-30 11:45:30,299 - JUNIFER - INFO - Loading parcellation /home/runner/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-09-30 11:45:30,331 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5
2024-09-30 11:45:31,297 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2
2024-09-30 11:45:31,396 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/tmpn9vwo4yf/parcellationsxxer45gk/Schaefer1000x7.nii.gz -r /tmp/tmpn9vwo4yf/parcellationsxxer45gk/MNI152Lin_T1w_2.0.nii.gz -t /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 -o /tmp/tmpjuf9svfq/parcellationsemtkrwts/Schaefer1000x7_warped_from_MNI152NLin6Asym_to_MNI152Lin.nii.gz
2024-09-30 11:45:38,763 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2024-09-30 11:45:39,882 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpavh_ud43/test.sqlite (multiple output)>
2024-09-30 11:45:40,033 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2024-09-30 11:45:40,033 - JUNIFER - INFO - Computing VBM_GM
2024-09-30 11:45:40,034 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-09-30 11:45:40,034 - JUNIFER - INFO - Parcellation parameters:
2024-09-30 11:45:40,034 - JUNIFER - INFO -      resolution: 2.0
2024-09-30 11:45:40,034 - JUNIFER - INFO -      n_rois: 1000
2024-09-30 11:45:40,034 - JUNIFER - INFO -      yeo_networks: 7
2024-09-30 11:45:40,036 - JUNIFER - INFO - Loading parcellation /home/runner/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-09-30 11:45:40,069 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5
2024-09-30 11:45:41,036 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2
2024-09-30 11:45:41,134 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/tmpn9vwo4yf/parcellations6ioa7hmt/Schaefer1000x7.nii.gz -r /tmp/tmpn9vwo4yf/parcellations6ioa7hmt/MNI152Lin_T1w_2.0.nii.gz -t /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 -o /tmp/tmpjuf9svfq/parcellationszdlmzqkf/Schaefer1000x7_warped_from_MNI152NLin6Asym_to_MNI152Lin.nii.gz
2024-09-30 11:45:48,585 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2024-09-30 11:45:49,686 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpavh_ud43/test.sqlite (multiple output)>
2024-09-30 11:45:49,841 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2024-09-30 11:45:49,841 - JUNIFER - INFO - Computing VBM_GM
2024-09-30 11:45:49,842 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-09-30 11:45:49,842 - JUNIFER - INFO - Parcellation parameters:
2024-09-30 11:45:49,842 - JUNIFER - INFO -      resolution: 2.0
2024-09-30 11:45:49,842 - JUNIFER - INFO -      n_rois: 1000
2024-09-30 11:45:49,842 - JUNIFER - INFO -      yeo_networks: 7
2024-09-30 11:45:49,844 - JUNIFER - INFO - Loading parcellation /home/runner/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-09-30 11:45:49,876 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5
2024-09-30 11:45:50,840 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2
2024-09-30 11:45:50,939 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/tmpn9vwo4yf/parcellationsr83wlam9/Schaefer1000x7.nii.gz -r /tmp/tmpn9vwo4yf/parcellationsr83wlam9/MNI152Lin_T1w_2.0.nii.gz -t /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 -o /tmp/tmpjuf9svfq/parcellationsoeu2dsyq/Schaefer1000x7_warped_from_MNI152NLin6Asym_to_MNI152Lin.nii.gz
2024-09-30 11:45:58,244 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2024-09-30 11:45:59,357 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpavh_ud43/test.sqlite (multiple output)>
2024-09-30 11:45:59,515 - JUNIFER - INFO - Marker collection fitting done
2024-09-30 11:45:59,515 - JUNIFER - INFO - Getting element sub-09
2024-09-30 11:45:59,516 - JUNIFER - INFO - Fitting pipeline
2024-09-30 11:45:59,516 - JUNIFER - INFO - Reading VBM_GM from /home/runner/nilearn_data/oasis1/OAS1_0010_MR1/mwrc1OAS1_0010_MR1_mpr_anon_fslswapdim_bet.nii.gz
2024-09-30 11:45:59,516 - JUNIFER - INFO - VBM_GM is of type NIFTI
2024-09-30 11:45:59,517 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2024-09-30 11:45:59,517 - JUNIFER - INFO - Computing VBM_GM
2024-09-30 11:45:59,517 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-09-30 11:45:59,517 - JUNIFER - INFO - Parcellation parameters:
2024-09-30 11:45:59,517 - JUNIFER - INFO -      resolution: 2.0
2024-09-30 11:45:59,518 - JUNIFER - INFO -      n_rois: 1000
2024-09-30 11:45:59,518 - JUNIFER - INFO -      yeo_networks: 7
2024-09-30 11:45:59,520 - JUNIFER - INFO - Loading parcellation /home/runner/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-09-30 11:45:59,551 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5
2024-09-30 11:46:00,520 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2
2024-09-30 11:46:00,619 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/tmpn9vwo4yf/parcellations_1iqojbe/Schaefer1000x7.nii.gz -r /tmp/tmpn9vwo4yf/parcellations_1iqojbe/MNI152Lin_T1w_2.0.nii.gz -t /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 -o /tmp/tmp9zoo5fqt/parcellationsfm95a7xm/Schaefer1000x7_warped_from_MNI152NLin6Asym_to_MNI152Lin.nii.gz
2024-09-30 11:46:08,120 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2024-09-30 11:46:09,280 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpavh_ud43/test.sqlite (multiple output)>
2024-09-30 11:46:09,432 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2024-09-30 11:46:09,432 - JUNIFER - INFO - Computing VBM_GM
2024-09-30 11:46:09,433 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-09-30 11:46:09,433 - JUNIFER - INFO - Parcellation parameters:
2024-09-30 11:46:09,433 - JUNIFER - INFO -      resolution: 2.0
2024-09-30 11:46:09,433 - JUNIFER - INFO -      n_rois: 1000
2024-09-30 11:46:09,433 - JUNIFER - INFO -      yeo_networks: 7
2024-09-30 11:46:09,435 - JUNIFER - INFO - Loading parcellation /home/runner/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-09-30 11:46:09,467 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5
2024-09-30 11:46:10,446 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2
2024-09-30 11:46:10,545 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/tmpn9vwo4yf/parcellations_hji3k_1/Schaefer1000x7.nii.gz -r /tmp/tmpn9vwo4yf/parcellations_hji3k_1/MNI152Lin_T1w_2.0.nii.gz -t /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 -o /tmp/tmp9zoo5fqt/parcellationslancqnbe/Schaefer1000x7_warped_from_MNI152NLin6Asym_to_MNI152Lin.nii.gz
2024-09-30 11:46:18,020 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2024-09-30 11:46:19,136 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpavh_ud43/test.sqlite (multiple output)>
2024-09-30 11:46:19,292 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2024-09-30 11:46:19,292 - JUNIFER - INFO - Computing VBM_GM
2024-09-30 11:46:19,292 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-09-30 11:46:19,292 - JUNIFER - INFO - Parcellation parameters:
2024-09-30 11:46:19,293 - JUNIFER - INFO -      resolution: 2.0
2024-09-30 11:46:19,293 - JUNIFER - INFO -      n_rois: 1000
2024-09-30 11:46:19,293 - JUNIFER - INFO -      yeo_networks: 7
2024-09-30 11:46:19,294 - JUNIFER - INFO - Loading parcellation /home/runner/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-09-30 11:46:19,327 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5
2024-09-30 11:46:20,292 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2
2024-09-30 11:46:20,390 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/tmpn9vwo4yf/parcellationstfaz3kdp/Schaefer1000x7.nii.gz -r /tmp/tmpn9vwo4yf/parcellationstfaz3kdp/MNI152Lin_T1w_2.0.nii.gz -t /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 -o /tmp/tmp9zoo5fqt/parcellationspv04v4oa/Schaefer1000x7_warped_from_MNI152NLin6Asym_to_MNI152Lin.nii.gz
2024-09-30 11:46:27,734 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2024-09-30 11:46:28,850 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpavh_ud43/test.sqlite (multiple output)>
2024-09-30 11:46:29,009 - JUNIFER - INFO - Marker collection fitting done
2024-09-30 11:46:29,010 - JUNIFER - INFO - Getting element sub-10
2024-09-30 11:46:29,010 - JUNIFER - INFO - Fitting pipeline
2024-09-30 11:46:29,010 - JUNIFER - INFO - Reading VBM_GM from /home/runner/nilearn_data/oasis1/OAS1_0011_MR1/mwrc1OAS1_0011_MR1_mpr_anon_fslswapdim_bet.nii.gz
2024-09-30 11:46:29,010 - JUNIFER - INFO - VBM_GM is of type NIFTI
2024-09-30 11:46:29,011 - JUNIFER - INFO - Fitting marker Schaefer1000x7_TrimMean80
2024-09-30 11:46:29,011 - JUNIFER - INFO - Computing VBM_GM
2024-09-30 11:46:29,011 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-09-30 11:46:29,011 - JUNIFER - INFO - Parcellation parameters:
2024-09-30 11:46:29,011 - JUNIFER - INFO -      resolution: 2.0
2024-09-30 11:46:29,012 - JUNIFER - INFO -      n_rois: 1000
2024-09-30 11:46:29,012 - JUNIFER - INFO -      yeo_networks: 7
2024-09-30 11:46:29,013 - JUNIFER - INFO - Loading parcellation /home/runner/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-09-30 11:46:29,045 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5
2024-09-30 11:46:30,011 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2
2024-09-30 11:46:30,109 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/tmpn9vwo4yf/parcellationsetsilwju/Schaefer1000x7.nii.gz -r /tmp/tmpn9vwo4yf/parcellationsetsilwju/MNI152Lin_T1w_2.0.nii.gz -t /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 -o /tmp/tmpr2qzwmpx/parcellationstucimn9g/Schaefer1000x7_warped_from_MNI152NLin6Asym_to_MNI152Lin.nii.gz
2024-09-30 11:46:37,520 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2024-09-30 11:46:38,637 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpavh_ud43/test.sqlite (multiple output)>
2024-09-30 11:46:38,788 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Mean
2024-09-30 11:46:38,788 - JUNIFER - INFO - Computing VBM_GM
2024-09-30 11:46:38,789 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-09-30 11:46:38,789 - JUNIFER - INFO - Parcellation parameters:
2024-09-30 11:46:38,789 - JUNIFER - INFO -      resolution: 2.0
2024-09-30 11:46:38,789 - JUNIFER - INFO -      n_rois: 1000
2024-09-30 11:46:38,789 - JUNIFER - INFO -      yeo_networks: 7
2024-09-30 11:46:38,791 - JUNIFER - INFO - Loading parcellation /home/runner/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-09-30 11:46:38,823 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5
2024-09-30 11:46:39,794 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2
2024-09-30 11:46:39,893 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/tmpn9vwo4yf/parcellationsaklb3bdu/Schaefer1000x7.nii.gz -r /tmp/tmpn9vwo4yf/parcellationsaklb3bdu/MNI152Lin_T1w_2.0.nii.gz -t /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 -o /tmp/tmpr2qzwmpx/parcellationsc7a0vc1i/Schaefer1000x7_warped_from_MNI152NLin6Asym_to_MNI152Lin.nii.gz
2024-09-30 11:46:47,281 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2024-09-30 11:46:48,363 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpavh_ud43/test.sqlite (multiple output)>
2024-09-30 11:46:48,519 - JUNIFER - INFO - Fitting marker Schaefer1000x7_Std
2024-09-30 11:46:48,519 - JUNIFER - INFO - Computing VBM_GM
2024-09-30 11:46:48,519 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2024-09-30 11:46:48,519 - JUNIFER - INFO - Parcellation parameters:
2024-09-30 11:46:48,519 - JUNIFER - INFO -      resolution: 2.0
2024-09-30 11:46:48,520 - JUNIFER - INFO -      n_rois: 1000
2024-09-30 11:46:48,520 - JUNIFER - INFO -      yeo_networks: 7
2024-09-30 11:46:48,522 - JUNIFER - INFO - Loading parcellation /home/runner/junifer/data/parcellations/schaefer_2018/Schaefer2018_1000Parcels_7Networks_order_FSLMNI152_2mm.nii.gz
2024-09-30 11:46:48,554 - JUNIFER - INFO - Found existing xfm file for MNI152NLin6Asym to MNI152Lin at /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5
2024-09-30 11:46:49,523 - JUNIFER - INFO - Downloading template MNI152Lin in resolution 2
2024-09-30 11:46:49,622 - JUNIFER - INFO - antsApplyTransforms command to be executed:
antsApplyTransforms -d 3 -e 3 -n 'GenericLabel[NearestNeighbor]' -i /tmp/tmpn9vwo4yf/parcellationslirp93js/Schaefer1000x7.nii.gz -r /tmp/tmpn9vwo4yf/parcellationslirp93js/MNI152Lin_T1w_2.0.nii.gz -t /home/runner/junifer/data/xfms/MNI152NLin6Asym_to_MNI152Lin/MNI152NLin6Asym_to_MNI152Lin_Composite.h5 -o /tmp/tmpr2qzwmpx/parcellationsadhxg9nl/Schaefer1000x7_warped_from_MNI152NLin6Asym_to_MNI152Lin.nii.gz
2024-09-30 11:46:57,156 - JUNIFER - INFO - antsApplyTransforms command succeeded with the following output:

2024-09-30 11:46:58,266 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ /tmp/tmpavh_ud43/test.sqlite (multiple output)>
2024-09-30 11:46:58,425 - JUNIFER - INFO - Marker collection fitting done

import tempfile

import junifer.testing.registry  # noqa: F401
from junifer.api import run


datagrabber = {
    "kind": "OasisVBMTestingDataGrabber",
}

markers = [
    {
        "name": "Schaefer1000x7_TrimMean80",
        "kind": "ParcelAggregation",
        "parcellation": "Schaefer1000x7",
        "method": "trim_mean",
        "method_params": {"proportiontocut": 0.2},
    },
    {
        "name": "Schaefer1000x7_Mean",
        "kind": "ParcelAggregation",
        "parcellation": "Schaefer1000x7",
        "method": "mean",
    },
    {
        "name": "Schaefer1000x7_Std",
        "kind": "ParcelAggregation",
        "parcellation": "Schaefer1000x7",
        "method": "std",
    },
]

storage = {
    "kind": "SQLiteFeatureStorage",
}

with tempfile.TemporaryDirectory() as tmpdir:
    uri = f"{tmpdir}/test.sqlite"
    storage["uri"] = uri
    run(
        workdir="/tmp",
        datagrabber=datagrabber,
        markers=markers,
        storage=storage,
    )