Index

A

AdHoc (junifer.datagrabber.ConfoundsFormat attribute) Adult (junifer.testing.datagrabbers.PartlyCloudyAgeGroup attribute) afni (junifer.markers.ALFFImpl attribute) (junifer.markers.ReHoImpl attribute) AFNI (junifer.pipeline.ExtDep attribute) afni (junifer.preprocess.SmoothingImpl attribute) age_group (junifer.testing.datagrabbers.PartlyCloudyTestingDataGrabber attribute) agg_method (junifer.markers.CrossParcellationFC attribute) (junifer.markers.RSSETSMarker attribute) agg_method_params (junifer.markers.CrossParcellationFC attribute) (junifer.markers.RSSETSMarker attribute) aggregate() (junifer.markers.EdgeCentricFCMaps method) (junifer.markers.EdgeCentricFCParcels method) (junifer.markers.EdgeCentricFCSpheres method) (junifer.markers.FunctionalConnectivityMaps method) (junifer.markers.FunctionalConnectivityParcels method) (junifer.markers.FunctionalConnectivitySpheres method) (junifer.markers.TemporalSNRMaps method) (junifer.markers.TemporalSNRParcels method) (junifer.markers.TemporalSNRSpheres method)

allow_overlap (junifer.markers.ALFFSpheres attribute) (junifer.markers.EdgeCentricFCSpheres attribute) (junifer.markers.FunctionalConnectivitySpheres attribute) (junifer.markers.ReHoSpheres attribute) (junifer.markers.SphereAggregation attribute) (junifer.markers.TemporalSNRSpheres attribute) Anticipation (junifer.datagrabber.AOMICTask attribute) ANTs (junifer.pipeline.ExtDep attribute) ants (junifer.preprocess.SpaceWarpingImpl attribute) AP (junifer.datagrabber.DMCCPhaseEncoding attribute) AssetDumperDispatcher (class in junifer.pipeline) AssetLoaderDispatcher (class in junifer.pipeline) asymmetry (junifer.markers.BrainPrint attribute) asymmetry_distance (junifer.markers.BrainPrint attribute) auto (junifer.preprocess.SpaceWarpingImpl attribute) Axcpt (junifer.datagrabber.DMCCTask attribute)

B

BART (junifer.configs.juseless.datagrabbers.UCLATask attribute) BaseDataDumpAsset (class in junifer.pipeline) BasePipelineDataRegistry (class in junifer.data) Bash (junifer.api.queue_context.EnvShell attribute)

Basic (junifer.preprocess.Confounds attribute) BHT (junifer.configs.juseless.datagrabbers.UCLATask attribute) BOLD (junifer.datagrabber.DataType attribute) Both (junifer.testing.datagrabbers.PartlyCloudyAgeGroup attribute) build_component_instance() (junifer.pipeline.PipelineComponentRegistry method)

C

Child (junifer.testing.datagrabbers.PartlyCloudyAgeGroup attribute) chunk_size (junifer.storage.HDF5FeatureStorage attribute) cleanup() (junifer.datagrabber.DataladDataGrabber method) cleanup_elementdir() (junifer.pipeline.WorkDirManager method) clear() (junifer.data.DataDispatcher method) (junifer.datagrabber.DataTypeManager method) (junifer.pipeline.AssetDumperDispatcher method) (junifer.pipeline.AssetLoaderDispatcher method) collect() (in module junifer.api.functions) (junifer.api.queue_context.GnuParallelLocalAdapter method) (junifer.api.queue_context.HTCondorAdapter method) (junifer.api.queue_context.QueueContextAdapter method) (junifer.storage.BaseFeatureStorage method) (junifer.storage.HDF5FeatureStorage method) (junifer.storage.SQLiteFeatureStorage method) collect_task (junifer.api.queue_context.HTCondorAdapter attribute) components (junifer.pipeline.PipelineComponentRegistry property) compression (junifer.storage.HDF5FeatureStorage attribute) compute() (junifer.markers.ALFFMaps method) (junifer.markers.ALFFParcels method) (junifer.markers.ALFFSpheres method) (junifer.markers.BaseMarker method) (junifer.markers.BrainPrint method) (junifer.markers.CrossParcellationFC method) (junifer.markers.MapsAggregation method) (junifer.markers.ParcelAggregation method) (junifer.markers.ReHoMaps method) (junifer.markers.ReHoParcels method) (junifer.markers.ReHoSpheres method) (junifer.markers.RSSETSMarker method) (junifer.markers.SphereAggregation method)

compute_complexity() (junifer.markers.complexity.HurstExponent method) (junifer.markers.complexity.MultiscaleEntropyAUC method) (junifer.markers.complexity.PermEntropy method) (junifer.markers.complexity.RangeEntropy method) (junifer.markers.complexity.RangeEntropyAUC method) (junifer.markers.complexity.SampleEntropy method) (junifer.markers.complexity.WeightedPermEntropy method) Conda (junifer.api.queue_context.EnvKind attribute) ConfigManager (class in junifer.utils) configure_logging() (in module junifer.utils) confounds_format (junifer.configs.juseless.datagrabbers.JuselessUCLA attribute) (junifer.datagrabber.DataladAOMICID1000 attribute) (junifer.datagrabber.DataladAOMICPIOP1 attribute) (junifer.datagrabber.DataladAOMICPIOP2 attribute) (junifer.datagrabber.DMCC13Benchmark attribute) (junifer.datagrabber.PatternDataGrabber attribute) CoordinatesRegistry (class in junifer.data) coords (junifer.markers.ALFFSpheres attribute) (junifer.markers.EdgeCentricFCSpheres attribute) (junifer.markers.FunctionalConnectivitySpheres attribute) (junifer.markers.ReHoSpheres attribute) (junifer.markers.SphereAggregation attribute) (junifer.markers.TemporalSNRSpheres attribute) corr_method (junifer.markers.CrossParcellationFC attribute) Count (junifer.stats.AggFunc attribute) count() (in module junifer.stats) cpus (junifer.api.queue_context.HTCondorAdapter attribute) Cuedts (junifer.datagrabber.DMCCTask attribute)

D

dag() (junifer.api.queue_context.HTCondorAdapter method) data (junifer.data.BasePipelineDataRegistry property) datadir (junifer.configs.juseless.datagrabbers.JuselessUCLA attribute) (junifer.datagrabber.BaseDataGrabber attribute) (junifer.datagrabber.DataladDataGrabber attribute) (junifer.datagrabber.MultipleDataGrabber attribute) (junifer.testing.datagrabbers.OasisVBMTestingDataGrabber attribute) (junifer.testing.datagrabbers.PartlyCloudyTestingDataGrabber attribute) (junifer.testing.datagrabbers.SPMAuditoryTestingDataGrabber attribute) DataDispatcher (class in junifer.data) datagrabbers (junifer.datagrabber.MultipleDataGrabber attribute) datalad_commit_id (junifer.datagrabber.DataladDataGrabber attribute) datalad_dirty (junifer.datagrabber.DataladDataGrabber attribute) datalad_id (junifer.datagrabber.DataladDataGrabber attribute) DataObjectDumper (class in junifer.pipeline) DataTypeManager (class in junifer.datagrabber) DataTypeSchema (class in junifer.datagrabber) deep_update() (in module junifer.utils)

delete() (junifer.utils.ConfigManager method) delete_element_tempdir() (junifer.pipeline.WorkDirManager method) delete_tempdir() (junifer.pipeline.WorkDirManager method) deregister() (junifer.data.BasePipelineDataRegistry method) (junifer.data.CoordinatesRegistry method) (junifer.data.MapsRegistry method) (junifer.data.MaskRegistry method) (junifer.data.ParcellationRegistry method) (junifer.pipeline.PipelineComponentRegistry method) deregister_data() (in module junifer.data) Derivatives (junifer.preprocess.Confounds attribute) detrend (junifer.preprocess.fMRIPrepConfoundRemover attribute) (junifer.preprocess.TemporalFilter attribute) disable_tag() (junifer.datagrabber.DataladDataGrabber class method) disk (junifer.api.queue_context.HTCondorAdapter attribute) dump() (junifer.pipeline.BaseDataDumpAsset method) (junifer.pipeline.DataObjectDumper method) duration (junifer.preprocess.TemporalSlicer attribute) DWI (junifer.datagrabber.DataType attribute)

E

element_to_index() (junifer.storage.PandasBaseFeatureStorage static method) elementdir (junifer.pipeline.WorkDirManager property) elements (junifer.api.queue_context.GnuParallelLocalAdapter attribute) (junifer.api.queue_context.HTCondorAdapter attribute) elements_to_run() (junifer.api.queue_context.GnuParallelLocalAdapter method)

EmoMatching (junifer.datagrabber.AOMICTask attribute) EMOTION (junifer.datagrabber.HCP1200Task attribute) env (junifer.api.queue_context.GnuParallelLocalAdapter attribute) (junifer.api.queue_context.HTCondorAdapter attribute) extra_preamble (junifer.api.queue_context.HTCondorAdapter attribute)

F

Faces (junifer.datagrabber.AOMICTask attribute) FALFF (junifer.datagrabber.DataType attribute) fd_threshold (junifer.preprocess.fMRIPrepConfoundRemover attribute) filter() (junifer.datagrabber.BaseDataGrabber method) fit() (junifer.pipeline.MarkerCollection method) fit_transform() (junifer.pipeline.PipelineStepMixin method) FMRIPrep (junifer.datagrabber.ConfoundsFormat attribute) force_float32 (junifer.storage.HDF5FeatureStorage attribute)

FreeSurfer (junifer.datagrabber.DataType attribute) (junifer.pipeline.ExtDep attribute) FSL (junifer.pipeline.ExtDep attribute) fsl (junifer.preprocess.SmoothingImpl attribute) (junifer.preprocess.SpaceWarpingImpl attribute) Full (junifer.preprocess.Confounds attribute) (junifer.storage.MatrixKind attribute) fulldir (junifer.datagrabber.BaseDataGrabber property) (junifer.datagrabber.DataladDataGrabber property)

G

GAMBLING (junifer.datagrabber.HCP1200Task attribute) GCOR (junifer.datagrabber.DataType attribute) get() (junifer.data.BasePipelineDataRegistry method) (junifer.data.CoordinatesRegistry method) (junifer.data.MapsRegistry method) (junifer.data.MaskRegistry method) (junifer.data.ParcellationRegistry method) (junifer.utils.ConfigManager method) get_aggfunc_by_name() (in module junifer.stats) get_class() (junifer.pipeline.PipelineComponentRegistry method) get_data() (in module junifer.data) get_element_keys() (junifer.datagrabber.BaseDataGrabber method) (junifer.datagrabber.MultipleDataGrabber method) (junifer.datagrabber.PatternDataGrabber method) (junifer.testing.datagrabbers.OasisVBMTestingDataGrabber method) (junifer.testing.datagrabbers.PartlyCloudyTestingDataGrabber method) (junifer.testing.datagrabbers.SPMAuditoryTestingDataGrabber method) get_element_tempdir() (junifer.pipeline.WorkDirManager method) get_elements() (junifer.configs.juseless.datagrabbers.JuselessUCLA method) (junifer.datagrabber.BaseDataGrabber method) (junifer.datagrabber.DataladAOMICPIOP1 method) (junifer.datagrabber.DataladAOMICPIOP2 method) (junifer.datagrabber.DMCC13Benchmark method) (junifer.datagrabber.HCP1200 method) (junifer.datagrabber.MultipleDataGrabber method) (junifer.datagrabber.PatternDataGrabber method) (junifer.testing.datagrabbers.OasisVBMTestingDataGrabber method) (junifer.testing.datagrabbers.PartlyCloudyTestingDataGrabber method) (junifer.testing.datagrabbers.SPMAuditoryTestingDataGrabber method)

get_engine() (junifer.storage.SQLiteFeatureStorage method) get_item() (junifer.datagrabber.BaseDataGrabber method) (junifer.datagrabber.DataladAOMICPIOP1 method) (junifer.datagrabber.DataladAOMICPIOP2 method) (junifer.datagrabber.DMCC13Benchmark method) (junifer.datagrabber.HCP1200 method) (junifer.datagrabber.MultipleDataGrabber method) (junifer.datagrabber.PatternDataGrabber method) (junifer.testing.datagrabbers.OasisVBMTestingDataGrabber method) (junifer.testing.datagrabbers.PartlyCloudyTestingDataGrabber method) (junifer.testing.datagrabbers.SPMAuditoryTestingDataGrabber method) get_tempdir() (junifer.pipeline.WorkDirManager method) get_template() (in module junifer.data) get_types() (junifer.datagrabber.BaseDataGrabber method) (junifer.datagrabber.MultipleDataGrabber method) get_xfm() (in module junifer.data) Gstroop (junifer.datagrabber.AOMICTask attribute) Guys (junifer.configs.juseless.datagrabbers.IXISite attribute)

H

HH (junifer.configs.juseless.datagrabbers.IXISite attribute)

high_pass (junifer.preprocess.fMRIPrepConfoundRemover attribute) (junifer.preprocess.TemporalFilter attribute)

I

ica_fix (junifer.datagrabber.HCP1200 attribute) Ignore (junifer.storage.Upsert attribute)

install() (junifer.datagrabber.DataladDataGrabber method) inverse_transform() (junifer.external.nilearn.JuniferNiftiSpheresMasker method) IOP (junifer.configs.juseless.datagrabbers.IXISite attribute)

J

job_dir (junifer.api.queue_context.GnuParallelLocalAdapter attribute) (junifer.api.queue_context.HTCondorAdapter attribute) job_name (junifer.api.queue_context.GnuParallelLocalAdapter attribute) (junifer.api.queue_context.HTCondorAdapter attribute) junifer (junifer.markers.ALFFImpl attribute) (junifer.markers.ReHoImpl attribute) junifer.api.decorators module junifer.api.functions module junifer.api.queue_context module junifer.cli.parser module junifer.configs.juseless.datagrabbers module junifer.data module junifer.datagrabber module junifer.datareader module junifer.external.nilearn module

junifer.markers module junifer.markers.complexity module junifer.onthefly module junifer.onthefly._brainprint module junifer.pipeline module junifer.preprocess module junifer.stats module junifer.storage module junifer.testing.datagrabbers module junifer.utils module JuniferConnectivityMeasure (class in junifer.external.nilearn) JuniferNiftiSpheresMasker (class in junifer.external.nilearn)

K

keep_eigenvectors (junifer.markers.BrainPrint attribute)

L

LANGUAGE (junifer.datagrabber.HCP1200Task attribute) LCOR (junifer.datagrabber.DataType attribute) list (junifer.data.BasePipelineDataRegistry property) list_data() (in module junifer.data) list_elements() (in module junifer.api.functions) list_features() (junifer.storage.BaseFeatureStorage method) (junifer.storage.HDF5FeatureStorage method) (junifer.storage.SQLiteFeatureStorage method) load() (junifer.data.BasePipelineDataRegistry method) (junifer.data.CoordinatesRegistry method) (junifer.data.MapsRegistry method) (junifer.data.MaskRegistry method) (junifer.data.ParcellationRegistry method) (junifer.pipeline.BaseDataDumpAsset class method) (junifer.pipeline.DataObjectDumper method)

load_data() (in module junifer.data) Local (junifer.api.queue_context.EnvKind attribute) low_pass (junifer.preprocess.fMRIPrepConfoundRemover attribute) (junifer.preprocess.TemporalFilter attribute) LowerTriangle (junifer.storage.MatrixKind attribute) LR (junifer.datagrabber.HCP1200PhaseEncoding attribute)

M

make_executable() (in module junifer.utils) maps (junifer.markers.ALFFMaps attribute) (junifer.markers.EdgeCentricFCMaps attribute) (junifer.markers.FunctionalConnectivityMaps attribute) (junifer.markers.MapsAggregation attribute) (junifer.markers.ReHoMaps attribute) (junifer.markers.TemporalSNRMaps attribute) MapsRegistry (class in junifer.data) MarkerCollection (class in junifer.pipeline) MaskRegistry (class in junifer.data) masks (junifer.markers.CrossParcellationFC attribute) (junifer.markers.MapsAggregation attribute) (junifer.markers.ParcelAggregation attribute) (junifer.markers.RSSETSMarker attribute) (junifer.markers.SphereAggregation attribute) (junifer.preprocess.fMRIPrepConfoundRemover attribute) (junifer.preprocess.TemporalFilter attribute) Matrix (junifer.storage.StorageType attribute) Mean (junifer.stats.AggFunc attribute) mem (junifer.api.queue_context.HTCondorAdapter attribute) method (junifer.markers.ParcelAggregation attribute) (junifer.markers.SphereAggregation attribute) method_params (junifer.markers.ParcelAggregation attribute) (junifer.markers.SphereAggregation attribute) MNI152NLin2009cAsym (junifer.datagrabber.AOMICSpace attribute) Mode (junifer.stats.AggFunc attribute) model_post_init() (junifer.api.queue_context.GnuParallelLocalAdapter method) (junifer.api.queue_context.HTCondorAdapter method) (junifer.configs.juseless.datagrabbers.JuselessDataladAOMICID1000VBM method) (junifer.configs.juseless.datagrabbers.JuselessDataladCamCANVBM method) (junifer.configs.juseless.datagrabbers.JuselessDataladIXIVBM method) (junifer.configs.juseless.datagrabbers.JuselessDataladUKBVBM method) (junifer.datagrabber.BaseDataGrabber method) (junifer.datagrabber.DataladAOMICID1000 method) (junifer.datagrabber.DataladAOMICPIOP1 method) (junifer.datagrabber.DataladAOMICPIOP2 method) (junifer.datagrabber.DataladDataGrabber method) (junifer.datagrabber.DataladHCP1200 method) (junifer.datagrabber.DMCC13Benchmark method) (junifer.datagrabber.PatternDataladDataGrabber method) (junifer.markers.BaseMarker method) (junifer.markers.BrainPrint method) (junifer.preprocess.BasePreprocessor method) (junifer.storage.BaseFeatureStorage method) (junifer.testing.datagrabbers.OasisVBMTestingDataGrabber method)

module junifer.api.decorators junifer.api.functions junifer.api.queue_context junifer.cli.parser junifer.configs.juseless.datagrabbers junifer.data junifer.datagrabber junifer.datareader junifer.external.nilearn junifer.markers junifer.markers.complexity junifer.onthefly junifer.onthefly._brainprint junifer.pipeline junifer.preprocess junifer.stats junifer.storage junifer.testing.datagrabbers junifer.utils MOTOR (junifer.datagrabber.HCP1200Task attribute)

N

name (junifer.markers.BaseMarker attribute) Native (junifer.datagrabber.AOMICSpace attribute) native_t1w (junifer.datagrabber.DMCC13Benchmark attribute) nilearn (junifer.preprocess.SmoothingImpl attribute)

No (junifer.api.queue_context.HTCondorCollect attribute) norm (junifer.markers.BrainPrint attribute) normalize() (in module junifer.onthefly._brainprint) num (junifer.markers.BrainPrint attribute)

O

on (junifer.markers.ALFFMaps attribute) (junifer.markers.ALFFParcels attribute) (junifer.markers.ALFFSpheres attribute) (junifer.markers.BaseMarker attribute) (junifer.markers.complexity.HurstExponent attribute) (junifer.markers.complexity.MultiscaleEntropyAUC attribute) (junifer.markers.complexity.PermEntropy attribute) (junifer.markers.complexity.RangeEntropy attribute) (junifer.markers.complexity.RangeEntropyAUC attribute) (junifer.markers.complexity.SampleEntropy attribute) (junifer.markers.complexity.WeightedPermEntropy attribute) (junifer.markers.CrossParcellationFC attribute) (junifer.markers.EdgeCentricFCMaps attribute) (junifer.markers.EdgeCentricFCParcels attribute) (junifer.markers.EdgeCentricFCSpheres attribute) (junifer.markers.FunctionalConnectivityMaps attribute) (junifer.markers.FunctionalConnectivityParcels attribute) (junifer.markers.FunctionalConnectivitySpheres attribute) (junifer.markers.MapsAggregation attribute) (junifer.markers.ParcelAggregation attribute) (junifer.markers.ReHoMaps attribute) (junifer.markers.ReHoParcels attribute) (junifer.markers.ReHoSpheres attribute) (junifer.markers.RSSETSMarker attribute) (junifer.markers.SphereAggregation attribute) (junifer.markers.TemporalSNRMaps attribute) (junifer.markers.TemporalSNRParcels attribute) (junifer.markers.TemporalSNRSpheres attribute) (junifer.preprocess.BasePreprocessor attribute) (junifer.preprocess.Smoothing attribute) (junifer.preprocess.SpaceWarper attribute)

One (junifer.datagrabber.DMCCRun attribute) OnSuccessOnly (junifer.api.queue_context.HTCondorCollect attribute) OptionalTypeSchema (class in junifer.datagrabber) overwrite (junifer.storage.HDF5FeatureStorage attribute)

P

PA (junifer.datagrabber.DMCCPhaseEncoding attribute) PAMENC (junifer.configs.juseless.datagrabbers.UCLATask attribute) PAMRET (junifer.configs.juseless.datagrabbers.UCLATask attribute) params (junifer.markers.complexity.HurstExponent attribute) (junifer.markers.complexity.MultiscaleEntropyAUC attribute) (junifer.markers.complexity.PermEntropy attribute) (junifer.markers.complexity.RangeEntropy attribute) (junifer.markers.complexity.RangeEntropyAUC attribute) (junifer.markers.complexity.SampleEntropy attribute) (junifer.markers.complexity.WeightedPermEntropy attribute) parcellation (junifer.markers.ALFFParcels attribute) (junifer.markers.EdgeCentricFCParcels attribute) (junifer.markers.FunctionalConnectivityParcels attribute) (junifer.markers.ParcelAggregation attribute) (junifer.markers.ReHoParcels attribute) (junifer.markers.RSSETSMarker attribute) (junifer.markers.TemporalSNRParcels attribute) parcellation_one (junifer.markers.CrossParcellationFC attribute) parcellation_two (junifer.markers.CrossParcellationFC attribute) ParcellationRegistry (class in junifer.data) parse_elements() (in module junifer.cli.parser) parse_yaml() (in module junifer.cli.parser) partial_pattern_ok (junifer.datagrabber.PatternDataGrabber attribute) patterns (junifer.configs.juseless.datagrabbers.JuselessDataladAOMICID1000VBM attribute) (junifer.configs.juseless.datagrabbers.JuselessDataladCamCANVBM attribute) (junifer.configs.juseless.datagrabbers.JuselessDataladIXIVBM attribute) (junifer.configs.juseless.datagrabbers.JuselessDataladUKBVBM attribute) (junifer.configs.juseless.datagrabbers.JuselessUCLA attribute) (junifer.datagrabber.DataladAOMICID1000 attribute) (junifer.datagrabber.DataladAOMICPIOP1 attribute) (junifer.datagrabber.DataladAOMICPIOP2 attribute) (junifer.datagrabber.DMCC13Benchmark attribute) (junifer.datagrabber.HCP1200 attribute) (junifer.datagrabber.PatternDataGrabber attribute)

PatternValidationMixin (class in junifer.datagrabber) phase_encodings (junifer.datagrabber.DMCC13Benchmark attribute) (junifer.datagrabber.HCP1200 attribute) PipelineComponentRegistry (class in junifer.pipeline) PipelineStepMixin (class in junifer.pipeline) popitem() (junifer.data.DataDispatcher method) (junifer.datagrabber.DataTypeManager method) (junifer.pipeline.AssetDumperDispatcher method) (junifer.pipeline.AssetLoaderDispatcher method) Power2 (junifer.preprocess.Confounds attribute) pre_collect() (junifer.api.queue_context.GnuParallelLocalAdapter method) (junifer.api.queue_context.HTCondorAdapter method) (junifer.api.queue_context.QueueContextAdapter method) pre_collect_cmds (junifer.api.queue_context.GnuParallelLocalAdapter attribute) (junifer.api.queue_context.HTCondorAdapter attribute) pre_run() (junifer.api.queue_context.GnuParallelLocalAdapter method) (junifer.api.queue_context.HTCondorAdapter method) (junifer.api.queue_context.QueueContextAdapter method) pre_run_cmds (junifer.api.queue_context.GnuParallelLocalAdapter attribute) (junifer.api.queue_context.HTCondorAdapter attribute) prepare() (junifer.api.queue_context.GnuParallelLocalAdapter method) (junifer.api.queue_context.HTCondorAdapter method) (junifer.api.queue_context.QueueContextAdapter method) preprocess() (junifer.preprocess.BasePreprocessor method) (junifer.preprocess.fMRIPrepConfoundRemover method) (junifer.preprocess.Smoothing method) (junifer.preprocess.SpaceWarper method) (junifer.preprocess.TemporalFilter method) (junifer.preprocess.TemporalSlicer method)

Q

queue() (in module junifer.api.functions)

QueueContextEnv (class in junifer.api.queue_context)

R

radius (junifer.markers.ALFFSpheres attribute) (junifer.markers.EdgeCentricFCSpheres attribute) (junifer.markers.FunctionalConnectivitySpheres attribute) (junifer.markers.ReHoSpheres attribute) (junifer.markers.SphereAggregation attribute) (junifer.markers.TemporalSNRSpheres attribute) raise_error() (in module junifer.utils) read() (junifer.storage.BaseFeatureStorage method) (junifer.storage.HDF5FeatureStorage method) (junifer.storage.SQLiteFeatureStorage method) read_df() (junifer.storage.BaseFeatureStorage method) (junifer.storage.HDF5FeatureStorage method) (junifer.storage.SQLiteFeatureStorage method) read_transform() (in module junifer.onthefly) reduce_confounds (junifer.testing.datagrabbers.PartlyCloudyTestingDataGrabber attribute) reference (junifer.preprocess.SpaceWarper attribute) register() (junifer.data.BasePipelineDataRegistry method) (junifer.data.CoordinatesRegistry method) (junifer.data.MapsRegistry method) (junifer.data.MaskRegistry method) (junifer.data.ParcellationRegistry method) (junifer.pipeline.PipelineComponentRegistry method) register_data() (in module junifer.data) register_data_dump_asset() (in module junifer.api.decorators) register_data_registry() (in module junifer.api.decorators) register_data_type() (in module junifer.datagrabber) register_datagrabber() (in module junifer.api.decorators) register_datareader() (in module junifer.api.decorators) register_marker() (in module junifer.api.decorators) register_preprocessor() (in module junifer.api.decorators) register_storage() (in module junifer.api.decorators)

RELATIONAL (junifer.datagrabber.HCP1200Task attribute) replacements (junifer.configs.juseless.datagrabbers.JuselessDataladAOMICID1000VBM attribute) (junifer.configs.juseless.datagrabbers.JuselessDataladCamCANVBM attribute) (junifer.configs.juseless.datagrabbers.JuselessDataladIXIVBM attribute) (junifer.configs.juseless.datagrabbers.JuselessDataladUKBVBM attribute) (junifer.configs.juseless.datagrabbers.JuselessUCLA attribute) (junifer.datagrabber.DataladAOMICID1000 attribute) (junifer.datagrabber.DataladAOMICPIOP1 attribute) (junifer.datagrabber.DataladAOMICPIOP2 attribute) (junifer.datagrabber.DMCC13Benchmark attribute) (junifer.datagrabber.HCP1200 attribute) (junifer.datagrabber.PatternDataGrabber attribute) required_data_types (junifer.preprocess.BasePreprocessor attribute) reset() (in module junifer.api.functions) REST (junifer.configs.juseless.datagrabbers.UCLATask attribute) Rest (junifer.datagrabber.DMCCTask attribute) REST1 (junifer.datagrabber.HCP1200Task attribute) REST2 (junifer.datagrabber.HCP1200Task attribute) RestingState (junifer.datagrabber.AOMICTask attribute) reweight (junifer.markers.BrainPrint attribute) reweight() (in module junifer.onthefly._brainprint) RL (junifer.datagrabber.HCP1200PhaseEncoding attribute) root_tempdir (junifer.pipeline.WorkDirManager property) rootdir (junifer.configs.juseless.datagrabbers.JuselessDataladUKBVBM attribute) (junifer.datagrabber.DataladDataGrabber attribute) (junifer.datagrabber.DataladHCP1200 attribute) run() (in module junifer.api.functions) (junifer.api.queue_context.GnuParallelLocalAdapter method) (junifer.api.queue_context.HTCondorAdapter method) (junifer.api.queue_context.QueueContextAdapter method) run_ext_cmd() (in module junifer.utils) runs (junifer.datagrabber.DMCC13Benchmark attribute)

S

ScalarTable (junifer.storage.StorageType attribute) SCAP (junifer.configs.juseless.datagrabbers.UCLATask attribute) scrub (junifer.preprocess.fMRIPrepConfoundRemover attribute) Select (junifer.stats.AggFunc attribute) select() (in module junifer.stats) sessions (junifer.datagrabber.DMCC13Benchmark attribute) set() (junifer.utils.ConfigManager method) set_inverse_transform_request() (junifer.external.nilearn.JuniferConnectivityMeasure method) (junifer.external.nilearn.JuniferNiftiSpheresMasker method) set_transform_request() (junifer.external.nilearn.JuniferConnectivityMeasure method) (junifer.external.nilearn.JuniferNiftiSpheresMasker method) setdefault() (junifer.data.DataDispatcher method) (junifer.datagrabber.DataTypeManager method) (junifer.pipeline.AssetDumperDispatcher method) (junifer.pipeline.AssetLoaderDispatcher method) single_output (junifer.storage.BaseFeatureStorage attribute) sites (junifer.configs.juseless.datagrabbers.JuselessDataladIXIVBM attribute) skip_cortex (junifer.markers.BrainPrint attribute) skip_file_check (junifer.datagrabber.DataladHCP1200 property) (junifer.datagrabber.PatternDataGrabber property) smoothing_params (junifer.preprocess.Smoothing attribute) SOCIAL (junifer.datagrabber.HCP1200Task attribute) space (junifer.datagrabber.DataladAOMICID1000 attribute) (junifer.datagrabber.DataladAOMICPIOP1 attribute) (junifer.datagrabber.DataladAOMICPIOP2 attribute) spike (junifer.preprocess.fMRIPrepConfoundRemover attribute) standardize (junifer.preprocess.fMRIPrepConfoundRemover attribute) (junifer.preprocess.TemporalFilter attribute) start (junifer.preprocess.TemporalSlicer attribute) Std (junifer.stats.AggFunc attribute) std_dvars_threshold (junifer.preprocess.fMRIPrepConfoundRemover attribute)

step_components() (junifer.pipeline.PipelineComponentRegistry method) steps (junifer.pipeline.PipelineComponentRegistry property) Stern (junifer.datagrabber.DMCCTask attribute) stop (junifer.preprocess.TemporalSlicer attribute) STOPSIGNAL (junifer.configs.juseless.datagrabbers.UCLATask attribute) StopSignal (junifer.datagrabber.AOMICTask attribute) storage_type() (junifer.markers.BaseMarker method) store() (junifer.markers.BaseMarker method) (junifer.storage.BaseFeatureStorage method) store_df() (junifer.storage.PandasBaseFeatureStorage method) (junifer.storage.SQLiteFeatureStorage method) store_matrix() (junifer.storage.BaseFeatureStorage method) (junifer.storage.HDF5FeatureStorage method) (junifer.storage.SQLiteFeatureStorage method) store_metadata() (junifer.storage.BaseFeatureStorage method) (junifer.storage.HDF5FeatureStorage method) (junifer.storage.SQLiteFeatureStorage method) store_scalar_table() (junifer.storage.BaseFeatureStorage method) (junifer.storage.HDF5FeatureStorage method) store_timeseries() (junifer.storage.BaseFeatureStorage method) (junifer.storage.HDF5FeatureStorage method) (junifer.storage.PandasBaseFeatureStorage method) store_timeseries_2d() (junifer.storage.BaseFeatureStorage method) (junifer.storage.HDF5FeatureStorage method) store_vector() (junifer.storage.BaseFeatureStorage method) (junifer.storage.HDF5FeatureStorage method) (junifer.storage.PandasBaseFeatureStorage method) Strategy (class in junifer.preprocess) strategy (junifer.preprocess.fMRIPrepConfoundRemover attribute) Stroop (junifer.datagrabber.DMCCTask attribute) submit (junifer.api.queue_context.GnuParallelLocalAdapter attribute) (junifer.api.queue_context.HTCondorAdapter attribute)

T

T1w (junifer.datagrabber.DataType attribute) T2w (junifer.datagrabber.DataType attribute) t_r (junifer.preprocess.fMRIPrepConfoundRemover attribute) (junifer.preprocess.TemporalFilter attribute) (junifer.preprocess.TemporalSlicer attribute) tasks (junifer.configs.juseless.datagrabbers.JuselessUCLA attribute) (junifer.datagrabber.DataladAOMICPIOP1 attribute) (junifer.datagrabber.DataladAOMICPIOP2 attribute) (junifer.datagrabber.DMCC13Benchmark attribute) (junifer.datagrabber.HCP1200 attribute) TASKSWITCH (junifer.configs.juseless.datagrabbers.UCLATask attribute) time_method (junifer.markers.MapsAggregation attribute) (junifer.markers.ParcelAggregation attribute) (junifer.markers.SphereAggregation attribute) time_method_params (junifer.markers.MapsAggregation attribute) (junifer.markers.ParcelAggregation attribute) (junifer.markers.SphereAggregation attribute) Timeseries (junifer.storage.StorageType attribute) Timeseries2D (junifer.storage.StorageType attribute)

transform_single_imgs() (junifer.external.nilearn.JuniferNiftiSpheresMasker method) TrimMean (junifer.stats.AggFunc attribute) Two (junifer.datagrabber.DMCCRun attribute) types (junifer.configs.juseless.datagrabbers.JuselessDataladAOMICID1000VBM attribute) (junifer.configs.juseless.datagrabbers.JuselessDataladCamCANVBM attribute) (junifer.configs.juseless.datagrabbers.JuselessDataladIXIVBM attribute) (junifer.configs.juseless.datagrabbers.JuselessDataladUKBVBM attribute) (junifer.configs.juseless.datagrabbers.JuselessUCLA attribute) (junifer.datagrabber.BaseDataGrabber attribute) (junifer.datagrabber.DataladAOMICID1000 attribute) (junifer.datagrabber.DataladAOMICPIOP1 attribute) (junifer.datagrabber.DataladAOMICPIOP2 attribute) (junifer.datagrabber.DataladHCP1200 attribute) (junifer.datagrabber.DMCC13Benchmark attribute) (junifer.datagrabber.HCP1200 attribute) (junifer.datagrabber.MultipleDataGrabber attribute) (junifer.testing.datagrabbers.OasisVBMTestingDataGrabber attribute) (junifer.testing.datagrabbers.PartlyCloudyTestingDataGrabber attribute) (junifer.testing.datagrabbers.SPMAuditoryTestingDataGrabber attribute)

U

Update (junifer.storage.Upsert attribute) update_meta() (junifer.pipeline.UpdateMetaMixin method) UpdateMetaMixin (class in junifer.pipeline) UpperTriangle (junifer.storage.MatrixKind attribute) upsert (junifer.storage.SQLiteFeatureStorage attribute) uri (junifer.configs.juseless.datagrabbers.JuselessDataladAOMICID1000VBM attribute) (junifer.configs.juseless.datagrabbers.JuselessDataladCamCANVBM attribute) (junifer.configs.juseless.datagrabbers.JuselessDataladIXIVBM attribute) (junifer.configs.juseless.datagrabbers.JuselessDataladUKBVBM attribute) (junifer.datagrabber.DataladAOMICID1000 attribute) (junifer.datagrabber.DataladAOMICPIOP1 attribute) (junifer.datagrabber.DataladAOMICPIOP2 attribute) (junifer.datagrabber.DataladDataGrabber attribute) (junifer.datagrabber.DataladHCP1200 attribute) (junifer.datagrabber.DMCC13Benchmark attribute) (junifer.storage.BaseFeatureStorage attribute)

use_cholmod (junifer.markers.BrainPrint attribute) using (junifer.preprocess.Smoothing attribute) (junifer.preprocess.SpaceWarper attribute)

V

valid_inputs (junifer.markers.BaseMarker property) (junifer.preprocess.BasePreprocessor property) validate() (junifer.pipeline.MarkerCollection method) validate_component() (junifer.pipeline.PipelineStepMixin method) validate_datagrabber_params() (junifer.datagrabber.BaseDataGrabber method) (junifer.datagrabber.DataladAOMICID1000 method) (junifer.datagrabber.DataladAOMICPIOP1 method) (junifer.datagrabber.DataladAOMICPIOP2 method) (junifer.datagrabber.DataladDataGrabber method) (junifer.datagrabber.DMCC13Benchmark method) (junifer.datagrabber.HCP1200 method) (junifer.datagrabber.MultipleDataGrabber method) (junifer.datagrabber.PatternDataGrabber method) (junifer.datagrabber.PatternDataladDataGrabber method) validate_input() (junifer.datareader.DefaultDataReader method) (junifer.markers.BaseMarker method) (junifer.pipeline.PipelineStepMixin method) (junifer.preprocess.BasePreprocessor method) (junifer.storage.BaseFeatureStorage method) validate_marker_params() (junifer.markers.BaseMarker method) (junifer.markers.complexity.HurstExponent method) (junifer.markers.complexity.MultiscaleEntropyAUC method) (junifer.markers.complexity.PermEntropy method) (junifer.markers.complexity.RangeEntropy method) (junifer.markers.complexity.RangeEntropyAUC method) (junifer.markers.complexity.SampleEntropy method) (junifer.markers.complexity.WeightedPermEntropy method) (junifer.markers.CrossParcellationFC method) (junifer.markers.MapsAggregation method) (junifer.markers.ParcelAggregation method) (junifer.markers.SphereAggregation method)

validate_patterns() (junifer.datagrabber.PatternValidationMixin method) validate_preprocessor_params() (junifer.preprocess.BasePreprocessor method) (junifer.preprocess.fMRIPrepConfoundRemover method) (junifer.preprocess.Smoothing method) (junifer.preprocess.SpaceWarper method) VBM_CSF (junifer.datagrabber.DataType attribute) VBM_GM (junifer.datagrabber.DataType attribute) VBM_WM (junifer.datagrabber.DataType attribute) Vector (junifer.storage.StorageType attribute) Venv (junifer.api.queue_context.EnvKind attribute) verbose (junifer.api.queue_context.GnuParallelLocalAdapter attribute) (junifer.api.queue_context.HTCondorAdapter attribute) verbose_datalad (junifer.api.queue_context.GnuParallelLocalAdapter attribute) (junifer.api.queue_context.HTCondorAdapter attribute)

W

warn_with_log() (in module junifer.utils) Warp (junifer.datagrabber.DataType attribute) Wave1Bas (junifer.datagrabber.DMCCSession attribute) Wave1Pro (junifer.datagrabber.DMCCSession attribute) Wave1Rea (junifer.datagrabber.DMCCSession attribute)

winsorized_mean() (in module junifer.stats) WinsorizedMean (junifer.stats.AggFunc attribute) WM (junifer.datagrabber.HCP1200Task attribute) workdir (junifer.pipeline.WorkDirManager property) WorkDirManager (class in junifer.pipeline) WorkingMemory (junifer.datagrabber.AOMICTask attribute)

Y

yaml_config_path (junifer.api.queue_context.GnuParallelLocalAdapter attribute) (junifer.api.queue_context.HTCondorAdapter attribute)

Yes (junifer.api.queue_context.HTCondorCollect attribute)

Z

Zsh (junifer.api.queue_context.EnvShell attribute)