.. include:: ../links.inc

.. _using:

Using ``junifer``
=================

In this section, we will cover the main aspects behind using ``junifer``. We
will first explain the basics behind junifer's code-less configuration. Then we
will show how to use the command line interface to ``run`` the pipeline and
``collect`` the results. Finally, we will show how to use the ``queue`` command
to interact with HPC and HTC systems.

.. toctree::
   :maxdepth: 2
   :caption: Contents:

   codeless
   running
   queueing


.. _using_components:

Using Common Components
-----------------------

The following sections explains common components of ``junifer`` that can be used
across many steps of the pipeline.

.. toctree::
   :maxdepth: 2
   :caption: Contents:

   masks